data_3EQD # _model_server_result.job_id uCcYIljbXI2T2bdK7hKlQg _model_server_result.datetime_utc '2024-11-28 18:02:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":6}' # _entry.id 3EQD # _exptl.entry_id 3EQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EQD _cell.length_a 77.01 _cell.length_b 77.01 _cell.length_c 222.37 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 111.185 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1B AGS . A AGS 2 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 B O2A AGS . A AGS 2 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc3 C MG MG . A MG 3 1_555 A OD1 ASN 162 A ASN 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 C MG MG . A MG 3 1_555 A OD2 ASP 175 A ASP 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc5 C MG MG . A MG 3 1_555 F O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 C MG MG . A MG 3 1_555 F O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc7 D CA CA . A CA 5 1_555 A OD1 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.655 ? metalc ? metalc8 D CA CA . A CA 5 1_555 A OD2 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc9 D CA CA . A CA 5 1_555 A OD1 ASP 33 A ASP 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc10 D CA CA . A CA 5 1_555 F O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc11 E NA NA . A NA 6 1_555 A OD1 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc12 E NA NA . A NA 6 1_555 A OD2 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc13 E NA NA . A NA 6 1_555 F O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc14 E NA NA . A NA 6 1_555 F O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc15 E NA NA . A NA 6 1_555 F O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc16 E NA NA . A NA 6 1_555 F O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EQD _atom_sites.fract_transf_matrix[1][1] 0.012985 _atom_sites.fract_transf_matrix[1][2] 0.007497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AGS A 1 2 2 AGS AGS . C 3 MG A 1 3 3 MG MG . D 4 CA A 1 5 5 CA CA . E 5 NA A 1 6 6 NA NA . F 6 HOH A 1 394 394 HOH HOH . F 6 HOH A 2 395 395 HOH HOH . F 6 HOH A 3 396 396 HOH HOH . F 6 HOH A 4 397 397 HOH HOH . F 6 HOH A 5 398 398 HOH HOH . F 6 HOH A 6 399 399 HOH HOH . F 6 HOH A 7 400 400 HOH HOH . F 6 HOH A 8 401 401 HOH HOH . F 6 HOH A 9 402 402 HOH HOH . F 6 HOH A 10 403 403 HOH HOH . F 6 HOH A 11 404 404 HOH HOH . F 6 HOH A 12 405 405 HOH HOH . F 6 HOH A 13 406 406 HOH HOH . F 6 HOH A 14 407 407 HOH HOH . F 6 HOH A 15 408 408 HOH HOH . F 6 HOH A 16 409 409 HOH HOH . F 6 HOH A 17 410 410 HOH HOH . F 6 HOH A 18 411 411 HOH HOH . F 6 HOH A 19 412 412 HOH HOH . F 6 HOH A 20 413 413 HOH HOH . F 6 HOH A 21 414 414 HOH HOH . F 6 HOH A 22 415 415 HOH HOH . F 6 HOH A 23 416 416 HOH HOH . F 6 HOH A 24 417 417 HOH HOH . F 6 HOH A 25 418 418 HOH HOH . F 6 HOH A 26 419 419 HOH HOH . F 6 HOH A 27 420 420 HOH HOH . F 6 HOH A 28 421 421 HOH HOH . F 6 HOH A 29 422 422 HOH HOH . F 6 HOH A 30 423 423 HOH HOH . F 6 HOH A 31 424 424 HOH HOH . F 6 HOH A 32 425 425 HOH HOH . F 6 HOH A 33 426 426 HOH HOH . F 6 HOH A 34 427 427 HOH HOH . F 6 HOH A 35 428 428 HOH HOH . F 6 HOH A 36 429 429 HOH HOH . F 6 HOH A 37 430 430 HOH HOH . F 6 HOH A 38 431 431 HOH HOH . F 6 HOH A 39 432 432 HOH HOH . F 6 HOH A 40 433 433 HOH HOH . F 6 HOH A 41 434 434 HOH HOH . F 6 HOH A 42 435 435 HOH HOH . F 6 HOH A 43 436 436 HOH HOH . F 6 HOH A 44 437 437 HOH HOH . F 6 HOH A 45 438 438 HOH HOH . F 6 HOH A 46 439 439 HOH HOH . F 6 HOH A 47 440 440 HOH HOH . F 6 HOH A 48 441 441 HOH HOH . F 6 HOH A 49 442 442 HOH HOH . F 6 HOH A 50 443 443 HOH HOH . F 6 HOH A 51 444 444 HOH HOH . F 6 HOH A 52 445 445 HOH HOH . F 6 HOH A 53 446 446 HOH HOH . F 6 HOH A 54 447 447 HOH HOH . F 6 HOH A 55 448 448 HOH HOH . F 6 HOH A 56 449 449 HOH HOH . F 6 HOH A 57 450 450 HOH HOH . F 6 HOH A 58 451 451 HOH HOH . F 6 HOH A 59 452 452 HOH HOH . F 6 HOH A 60 453 453 HOH HOH . F 6 HOH A 61 454 454 HOH HOH . F 6 HOH A 62 455 455 HOH HOH . F 6 HOH A 63 456 456 HOH HOH . F 6 HOH A 64 457 457 HOH HOH . F 6 HOH A 65 458 458 HOH HOH . F 6 HOH A 66 459 459 HOH HOH . F 6 HOH A 67 460 460 HOH HOH . F 6 HOH A 68 461 461 HOH HOH . F 6 HOH A 69 462 462 HOH HOH . F 6 HOH A 70 463 463 HOH HOH . F 6 HOH A 71 464 464 HOH HOH . F 6 HOH A 72 465 465 HOH HOH . F 6 HOH A 73 466 466 HOH HOH . F 6 HOH A 74 467 467 HOH HOH . F 6 HOH A 75 468 468 HOH HOH . F 6 HOH A 76 469 469 HOH HOH . F 6 HOH A 77 470 470 HOH HOH . F 6 HOH A 78 471 471 HOH HOH . F 6 HOH A 79 472 472 HOH HOH . F 6 HOH A 80 473 473 HOH HOH . F 6 HOH A 81 474 474 HOH HOH . F 6 HOH A 82 475 475 HOH HOH . F 6 HOH A 83 476 476 HOH HOH . F 6 HOH A 84 477 477 HOH HOH . F 6 HOH A 85 478 478 HOH HOH . F 6 HOH A 86 479 479 HOH HOH . F 6 HOH A 87 480 480 HOH HOH . F 6 HOH A 88 481 481 HOH HOH . F 6 HOH A 89 482 482 HOH HOH . F 6 HOH A 90 483 483 HOH HOH . F 6 HOH A 91 484 484 HOH HOH . F 6 HOH A 92 485 485 HOH HOH . F 6 HOH A 93 486 486 HOH HOH . F 6 HOH A 94 487 487 HOH HOH . F 6 HOH A 95 488 488 HOH HOH . F 6 HOH A 96 489 489 HOH HOH . F 6 HOH A 97 490 490 HOH HOH . F 6 HOH A 98 491 491 HOH HOH . F 6 HOH A 99 492 492 HOH HOH . F 6 HOH A 100 493 493 HOH HOH . F 6 HOH A 101 494 494 HOH HOH . F 6 HOH A 102 495 495 HOH HOH . F 6 HOH A 103 496 496 HOH HOH . F 6 HOH A 104 497 497 HOH HOH . F 6 HOH A 105 498 498 HOH HOH . F 6 HOH A 106 499 499 HOH HOH . F 6 HOH A 107 500 500 HOH HOH . F 6 HOH A 108 501 501 HOH HOH . F 6 HOH A 109 502 502 HOH HOH . F 6 HOH A 110 503 503 HOH HOH . F 6 HOH A 111 504 504 HOH HOH . F 6 HOH A 112 505 505 HOH HOH . F 6 HOH A 113 506 506 HOH HOH . F 6 HOH A 114 507 507 HOH HOH . F 6 HOH A 115 508 508 HOH HOH . F 6 HOH A 116 509 509 HOH HOH . F 6 HOH A 117 510 510 HOH HOH . F 6 HOH A 118 511 511 HOH HOH . F 6 HOH A 119 512 512 HOH HOH . F 6 HOH A 120 513 513 HOH HOH . F 6 HOH A 121 514 514 HOH HOH . F 6 HOH A 122 515 515 HOH HOH . F 6 HOH A 123 516 516 HOH HOH . F 6 HOH A 124 517 517 HOH HOH . F 6 HOH A 125 518 518 HOH HOH . F 6 HOH A 126 519 519 HOH HOH . F 6 HOH A 127 520 520 HOH HOH . F 6 HOH A 128 521 521 HOH HOH . F 6 HOH A 129 522 522 HOH HOH . F 6 HOH A 130 523 523 HOH HOH . F 6 HOH A 131 524 524 HOH HOH . F 6 HOH A 132 525 393 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -2.534 _atom_site.Cartn_y 66.473 _atom_site.Cartn_z 52.364 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 6 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #