data_3EQF # _model_server_result.job_id rOtNMwZcClNNbstBHKJ_qg _model_server_result.datetime_utc '2024-11-07 20:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3EQF # _exptl.entry_id 3EQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.473 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description K-252A _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EQF _cell.length_a 78.16 _cell.length_b 78.16 _cell.length_c 222.99 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 111.495 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 3 1_555 A OD2 ASP 157 A ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 D CA CA . A CA 5 1_555 A OD1 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.518 ? metalc ? metalc3 D CA CA . A CA 5 1_555 A OD2 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 D CA CA . A CA 5 1_555 A OD1 ASP 33 A ASP 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc5 E NA NA . A NA 6 1_555 A OD1 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 E NA NA . A NA 6 1_555 A OD2 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? # _chem_comp.formula 'C27 H21 N3 O5' _chem_comp.formula_weight 467.473 _chem_comp.id KSA _chem_comp.mon_nstd_flag . _chem_comp.name K-252A _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C22 KSA doub 173 n n C22 O5 KSA sing 174 n n C22 C1 KSA sing 175 n n O5 C26 KSA sing 176 n n C26 H261 KSA sing 177 n n C26 H262 KSA sing 178 n n C26 H263 KSA sing 179 n n C1 O4 KSA sing 180 n n C1 C2 KSA sing 181 n n C1 C27 KSA sing 182 n n O4 HO4 KSA sing 183 n n C2 O1 KSA sing 184 n n C2 C25 KSA sing 185 n n C2 N1 KSA sing 186 n n O1 C24 KSA sing 187 n n C25 H251 KSA sing 188 n n C25 H252 KSA sing 189 n n C25 H253 KSA sing 190 n n N1 C3 KSA sing 191 n y N1 C10 KSA sing 192 n y C3 C4 KSA doub 193 n y C3 C8 KSA sing 194 n y C4 N2 KSA sing 195 n y C4 C5 KSA sing 196 n y N2 C24 KSA sing 197 n n N2 C17 KSA sing 198 n y C24 C27 KSA sing 199 n n C24 H24 KSA sing 200 n n C27 H271 KSA sing 201 n n C27 H272 KSA sing 202 n n C17 C18 KSA doub 203 n y C17 C16 KSA sing 204 n y C18 C19 KSA sing 205 n y C18 H18 KSA sing 206 n n C19 C20 KSA doub 207 n y C19 H19 KSA sing 208 n n C20 C21 KSA sing 209 n y C20 H20 KSA sing 210 n n C21 C16 KSA doub 211 n y C21 H21 KSA sing 212 n n C16 C5 KSA sing 213 n y C5 C6 KSA doub 214 n y C6 C15 KSA sing 215 n n C6 C7 KSA sing 216 n y C15 O2 KSA doub 217 n n C15 N3 KSA sing 218 n n C7 C23 KSA sing 219 n n C7 C8 KSA doub 220 n y C23 N3 KSA sing 221 n n C23 H231 KSA sing 222 n n C23 H232 KSA sing 223 n n N3 HN3 KSA sing 224 n n C8 C9 KSA sing 225 n y C9 C10 KSA doub 226 n y C9 C14 KSA sing 227 n y C10 C11 KSA sing 228 n y C11 C12 KSA doub 229 n y C11 H11 KSA sing 230 n n C14 C13 KSA doub 231 n y C14 H14 KSA sing 232 n n C13 C12 KSA sing 233 n y C13 H13 KSA sing 234 n n C12 H12 KSA sing 235 n n # _atom_sites.entry_id 3EQF _atom_sites.fract_transf_matrix[1][1] 0.012794 _atom_sites.fract_transf_matrix[1][2] 0.007387 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KSA A 1 1 1 KSA KSA . C 3 MG A 1 3 3 MG MG . D 4 CA A 1 5 5 CA CA . E 5 NA A 1 6 6 NA NA . F 6 HOH A 1 394 394 HOH HOH . F 6 HOH A 2 395 395 HOH HOH . F 6 HOH A 3 396 396 HOH HOH . F 6 HOH A 4 397 397 HOH HOH . F 6 HOH A 5 398 398 HOH HOH . F 6 HOH A 6 399 399 HOH HOH . F 6 HOH A 7 400 400 HOH HOH . F 6 HOH A 8 401 393 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 KSA . . . B 2 -10.609 65.618 32.754 1 62.49 ? O3 KSA 1 A 1 HETATM 2 C C22 KSA . . . B 2 -10.42 66.837 32.982 1 61.83 ? C22 KSA 1 A 1 HETATM 3 O O5 KSA . . . B 2 -11.398 67.738 33.197 1 61.94 ? O5 KSA 1 A 1 HETATM 4 C C26 KSA . . . B 2 -12.739 67.318 33.174 1 62.2 ? C26 KSA 1 A 1 HETATM 5 C C1 KSA . . . B 2 -8.999 67.48 33.047 1 60.23 ? C1 KSA 1 A 1 HETATM 6 O O4 KSA . . . B 2 -8.141 66.915 32.056 1 60.53 ? O4 KSA 1 A 1 HETATM 7 C C2 KSA . . . B 2 -8.366 67.409 34.438 1 59.19 ? C2 KSA 1 A 1 HETATM 8 O O1 KSA . . . B 2 -8.844 68.508 35.149 1 58.92 ? O1 KSA 1 A 1 HETATM 9 C C25 KSA . . . B 2 -8.726 66.164 35.292 1 59.13 ? C25 KSA 1 A 1 HETATM 10 N N1 KSA . . . B 2 -6.855 67.524 34.395 1 58.77 ? N1 KSA 1 A 1 HETATM 11 C C3 KSA . . . B 2 -6.102 68.744 34.451 1 58.19 ? C3 KSA 1 A 1 HETATM 12 C C4 KSA . . . B 2 -6.553 70.07 34.429 1 57.73 ? C4 KSA 1 A 1 HETATM 13 N N2 KSA . . . B 2 -7.896 70.507 34.398 1 57.82 ? N2 KSA 1 A 1 HETATM 14 C C24 KSA . . . B 2 -9.058 69.572 34.3 1 58.79 ? C24 KSA 1 A 1 HETATM 15 C C27 KSA . . . B 2 -9.101 69 32.863 1 59.52 ? C27 KSA 1 A 1 HETATM 16 C C17 KSA . . . B 2 -7.92 71.909 34.385 1 56.78 ? C17 KSA 1 A 1 HETATM 17 C C18 KSA . . . B 2 -8.939 72.866 34.358 1 56.4 ? C18 KSA 1 A 1 HETATM 18 C C19 KSA . . . B 2 -8.6 74.234 34.359 1 56.18 ? C19 KSA 1 A 1 HETATM 19 C C20 KSA . . . B 2 -7.253 74.637 34.403 1 56.23 ? C20 KSA 1 A 1 HETATM 20 C C21 KSA . . . B 2 -6.221 73.686 34.442 1 56.64 ? C21 KSA 1 A 1 HETATM 21 C C16 KSA . . . B 2 -6.539 72.304 34.433 1 56.87 ? C16 KSA 1 A 1 HETATM 22 C C5 KSA . . . B 2 -5.707 71.169 34.453 1 57.14 ? C5 KSA 1 A 1 HETATM 23 C C6 KSA . . . B 2 -4.304 70.862 34.495 1 56.62 ? C6 KSA 1 A 1 HETATM 24 C C15 KSA . . . B 2 -3.105 71.761 34.545 1 56.04 ? C15 KSA 1 A 1 HETATM 25 O O2 KSA . . . B 2 -3.086 72.986 34.552 1 55.74 ? O2 KSA 1 A 1 HETATM 26 C C7 KSA . . . B 2 -3.855 69.534 34.512 1 56.84 ? C7 KSA 1 A 1 HETATM 27 C C23 KSA . . . B 2 -2.345 69.526 34.562 1 56.32 ? C23 KSA 1 A 1 HETATM 28 N N3 KSA . . . B 2 -2.025 70.964 34.579 1 55.92 ? N3 KSA 1 A 1 HETATM 29 C C8 KSA . . . B 2 -4.755 68.439 34.488 1 57.84 ? C8 KSA 1 A 1 HETATM 30 C C9 KSA . . . B 2 -4.652 67.057 34.486 1 58.18 ? C9 KSA 1 A 1 HETATM 31 C C10 KSA . . . B 2 -5.945 66.454 34.453 1 58.43 ? C10 KSA 1 A 1 HETATM 32 C C11 KSA . . . B 2 -6.07 65.055 34.448 1 58.71 ? C11 KSA 1 A 1 HETATM 33 C C14 KSA . . . B 2 -3.506 66.251 34.52 1 58.75 ? C14 KSA 1 A 1 HETATM 34 C C13 KSA . . . B 2 -3.643 64.842 34.51 1 58.82 ? C13 KSA 1 A 1 HETATM 35 C C12 KSA . . . B 2 -4.916 64.25 34.467 1 58.72 ? C12 KSA 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #