data_3EQG # _model_server_result.job_id LYDT0zsL7RKpeE-V82wEBA _model_server_result.datetime_utc '2024-11-07 19:14:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eqg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3EQG # _exptl.entry_id 3EQG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.193 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[(2R)-2,3-dihydroxypropyl]oxy}-3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EQG _cell.length_a 76 _cell.length_b 76 _cell.length_c 222.32 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EQG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 111.16 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1B ADP . A ADP 2 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc2 B O2A ADP . A ADP 2 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc3 C MG MG . A MG 3 1_555 A OD1 ASN 162 A ASN 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 C MG MG . A MG 3 1_555 A OD2 ASP 175 A ASP 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc5 C MG MG . A MG 3 1_555 G O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc6 E NA NA . A NA 6 1_555 A OD1 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc7 E NA NA . A NA 6 1_555 A OD2 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc8 E NA NA . A NA 6 1_555 A OD1 ASP 103 A ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? # _chem_comp.formula 'C16 H14 F3 I N2 O4' _chem_comp.formula_weight 482.193 _chem_comp.id 4BM _chem_comp.mon_nstd_flag . _chem_comp.name N-{[(2R)-2,3-dihydroxypropyl]oxy}-3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 4BM doub 1 n y C01 C06 4BM sing 2 n y C01 N07 4BM sing 3 n n C02 C03 4BM sing 4 n y C03 C04 4BM doub 5 n y C04 C05 4BM sing 6 n y C04 I23 4BM sing 7 n n C05 C06 4BM doub 8 n y C06 F24 4BM sing 9 n n N07 C08 4BM sing 10 n n C08 C09 4BM doub 11 n y C08 C13 4BM sing 12 n y C09 C10 4BM sing 13 n y C09 C14 4BM sing 14 n n C10 C11 4BM doub 15 n y C11 C12 4BM sing 16 n y C12 C13 4BM doub 17 n y C12 F26 4BM sing 18 n n C13 F25 4BM sing 19 n n C14 N15 4BM sing 20 n n C14 O16 4BM doub 21 n n N15 O17 4BM sing 22 n n O17 C18 4BM sing 23 n n C18 C19 4BM sing 24 n n C19 C20 4BM sing 25 n n C19 O21 4BM sing 26 n n C20 O22 4BM sing 27 n n C02 H02 4BM sing 28 n n C03 H03 4BM sing 29 n n C05 H05 4BM sing 30 n n N07 HN07 4BM sing 31 n n C10 H10 4BM sing 32 n n C11 H11 4BM sing 33 n n N15 HN15 4BM sing 34 n n C18 H18 4BM sing 35 n n C18 H18A 4BM sing 36 n n C19 H19 4BM sing 37 n n C20 H20 4BM sing 38 n n C20 H20A 4BM sing 39 n n O21 HO21 4BM sing 40 n n O22 HO22 4BM sing 41 n n # _atom_sites.entry_id 3EQG _atom_sites.fract_transf_matrix[1][1] 0.013158 _atom_sites.fract_transf_matrix[1][2] 0.007597 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 2 2 ADP ADP . C 3 MG A 1 3 3 MG MG . D 4 CA A 1 5 5 CA CA . E 5 NA A 1 6 6 NA NA . F 6 4BM A 1 1 1 4BM 4BM . G 7 HOH A 1 394 394 HOH HOH . G 7 HOH A 2 395 395 HOH HOH . G 7 HOH A 3 396 396 HOH HOH . G 7 HOH A 4 397 397 HOH HOH . G 7 HOH A 5 398 398 HOH HOH . G 7 HOH A 6 399 399 HOH HOH . G 7 HOH A 7 400 400 HOH HOH . G 7 HOH A 8 401 401 HOH HOH . G 7 HOH A 9 402 402 HOH HOH . G 7 HOH A 10 403 403 HOH HOH . G 7 HOH A 11 404 404 HOH HOH . G 7 HOH A 12 405 405 HOH HOH . G 7 HOH A 13 406 406 HOH HOH . G 7 HOH A 14 407 407 HOH HOH . G 7 HOH A 15 408 408 HOH HOH . G 7 HOH A 16 409 409 HOH HOH . G 7 HOH A 17 410 410 HOH HOH . G 7 HOH A 18 411 411 HOH HOH . G 7 HOH A 19 412 412 HOH HOH . G 7 HOH A 20 413 413 HOH HOH . G 7 HOH A 21 414 414 HOH HOH . G 7 HOH A 22 415 415 HOH HOH . G 7 HOH A 23 416 416 HOH HOH . G 7 HOH A 24 417 417 HOH HOH . G 7 HOH A 25 418 418 HOH HOH . G 7 HOH A 26 419 419 HOH HOH . G 7 HOH A 27 420 420 HOH HOH . G 7 HOH A 28 421 421 HOH HOH . G 7 HOH A 29 422 422 HOH HOH . G 7 HOH A 30 423 423 HOH HOH . G 7 HOH A 31 424 424 HOH HOH . G 7 HOH A 32 425 425 HOH HOH . G 7 HOH A 33 426 426 HOH HOH . G 7 HOH A 34 427 427 HOH HOH . G 7 HOH A 35 428 428 HOH HOH . G 7 HOH A 36 429 429 HOH HOH . G 7 HOH A 37 430 430 HOH HOH . G 7 HOH A 38 431 431 HOH HOH . G 7 HOH A 39 432 432 HOH HOH . G 7 HOH A 40 433 433 HOH HOH . G 7 HOH A 41 434 434 HOH HOH . G 7 HOH A 42 435 435 HOH HOH . G 7 HOH A 43 436 436 HOH HOH . G 7 HOH A 44 437 393 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 4BM . . . F 6 -0.086 58.908 33.944 1 45.76 ? C01 4BM 1 A 1 HETATM 2 C C02 4BM . . . F 6 0.713 58.721 32.757 1 46.2 ? C02 4BM 1 A 1 HETATM 3 C C03 4BM . . . F 6 1.621 59.646 32.192 1 43.13 ? C03 4BM 1 A 1 HETATM 4 C C04 4BM . . . F 6 1.761 60.839 32.825 1 47.29 ? C04 4BM 1 A 1 HETATM 5 C C05 4BM . . . F 6 0.991 61.035 33.959 1 47.95 ? C05 4BM 1 A 1 HETATM 6 C C06 4BM . . . F 6 0.089 60.141 34.488 1 46.57 ? C06 4BM 1 A 1 HETATM 7 N N07 4BM . . . F 6 -1.016 57.978 34.497 1 45.45 ? N07 4BM 1 A 1 HETATM 8 C C08 4BM . . . F 6 -1.256 56.655 33.976 1 48.49 ? C08 4BM 1 A 1 HETATM 9 C C09 4BM . . . F 6 -2.541 56.212 33.626 1 52.86 ? C09 4BM 1 A 1 HETATM 10 C C10 4BM . . . F 6 -2.772 54.929 33.055 1 52.76 ? C10 4BM 1 A 1 HETATM 11 C C11 4BM . . . F 6 -1.738 54.034 32.721 1 52.89 ? C11 4BM 1 A 1 HETATM 12 C C12 4BM . . . F 6 -0.455 54.476 33.054 1 58.14 ? C12 4BM 1 A 1 HETATM 13 C C13 4BM . . . F 6 -0.261 55.745 33.691 1 51.44 ? C13 4BM 1 A 1 HETATM 14 C C14 4BM . . . F 6 -3.664 57.057 34.04 1 57.54 ? C14 4BM 1 A 1 HETATM 15 N N15 4BM . . . F 6 -4.848 56.867 33.381 1 70.06 ? N15 4BM 1 A 1 HETATM 16 O O16 4BM . . . F 6 -3.449 57.812 34.998 1 52.79 ? O16 4BM 1 A 1 HETATM 17 O O17 4BM . . . F 6 -6.028 57.664 33.789 1 79.01 ? O17 4BM 1 A 1 HETATM 18 C C18 4BM . . . F 6 -6.233 57.497 35.236 1 80.47 ? C18 4BM 1 A 1 HETATM 19 C C19 4BM . . . F 6 -7.636 57.738 35.772 1 80.68 ? C19 4BM 1 A 1 HETATM 20 C C20 4BM . . . F 6 -7.627 58.523 37.088 1 81.55 ? C20 4BM 1 A 1 HETATM 21 O O21 4BM . . . F 6 -8.508 58.339 34.803 1 80.42 ? O21 4BM 1 A 1 HETATM 22 O O22 4BM . . . F 6 -8.882 59.192 37.103 1 82.46 ? O22 4BM 1 A 1 HETATM 23 I I23 4BM . . . F 6 3.061 62.447 32.285 1 56.96 ? I23 4BM 1 A 1 HETATM 24 F F24 4BM . . . F 6 -0.583 60.553 35.543 1 44.44 ? F24 4BM 1 A 1 HETATM 25 F F25 4BM . . . F 6 0.964 56.087 33.946 1 53.82 ? F25 4BM 1 A 1 HETATM 26 F F26 4BM . . . F 6 0.628 53.668 32.768 1 64.17 ? F26 4BM 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #