data_3EQM # _model_server_result.job_id K4VobXB8UhmzcK-rNx_f6Q _model_server_result.datetime_utc '2025-03-04 14:36:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 3EQM # _exptl.entry_id 3EQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EQM _cell.length_a 140.208 _cell.length_b 140.208 _cell.length_c 119.266 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 437 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.399 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 392 n n P O2 PO4 sing 393 n n P O3 PO4 sing 394 n n P O4 PO4 sing 395 n n # _atom_sites.entry_id 3EQM _atom_sites.fract_transf_matrix[1][1] 0.007132 _atom_sites.fract_transf_matrix[1][2] 0.004118 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 ASD A 1 601 601 ASD ASD . D 4 PO4 A 1 602 50 PO4 PO4 . E 4 PO4 A 1 603 51 PO4 PO4 . F 5 HOH A 1 604 1 HOH HOH . F 5 HOH A 2 605 2 HOH HOH . F 5 HOH A 3 606 3 HOH HOH . F 5 HOH A 4 607 4 HOH HOH . F 5 HOH A 5 608 5 HOH HOH . F 5 HOH A 6 609 6 HOH HOH . F 5 HOH A 7 610 7 HOH HOH . F 5 HOH A 8 611 8 HOH HOH . F 5 HOH A 9 612 9 HOH HOH . F 5 HOH A 10 613 10 HOH HOH . F 5 HOH A 11 614 11 HOH HOH . F 5 HOH A 12 615 12 HOH HOH . F 5 HOH A 13 616 14 HOH HOH . F 5 HOH A 14 617 15 HOH HOH . F 5 HOH A 15 618 16 HOH HOH . F 5 HOH A 16 619 18 HOH HOH . F 5 HOH A 17 620 20 HOH HOH . F 5 HOH A 18 621 24 HOH HOH . F 5 HOH A 19 622 25 HOH HOH . F 5 HOH A 20 623 26 HOH HOH . F 5 HOH A 21 624 27 HOH HOH . F 5 HOH A 22 625 30 HOH HOH . F 5 HOH A 23 626 31 HOH HOH . F 5 HOH A 24 627 32 HOH HOH . F 5 HOH A 25 628 33 HOH HOH . F 5 HOH A 26 629 35 HOH HOH . F 5 HOH A 27 630 36 HOH HOH . F 5 HOH A 28 631 38 HOH HOH . F 5 HOH A 29 632 39 HOH HOH . F 5 HOH A 30 633 40 HOH HOH . F 5 HOH A 31 634 45 HOH HOH . F 5 HOH A 32 635 46 HOH HOH . F 5 HOH A 33 636 47 HOH HOH . F 5 HOH A 34 637 48 HOH HOH . F 5 HOH A 35 638 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 71.41 62.644 53.41 1 120.2 ? P PO4 602 A 1 HETATM 2 O O1 PO4 . . . D 4 71.635 64.108 53.718 1 120.62 ? O1 PO4 602 A 1 HETATM 3 O O2 PO4 . . . D 4 71.629 62.423 51.931 1 120.22 ? O2 PO4 602 A 1 HETATM 4 O O3 PO4 . . . D 4 72.369 61.805 54.224 1 120.29 ? O3 PO4 602 A 1 HETATM 5 O O4 PO4 . . . D 4 69.994 62.253 53.761 1 120.25 ? O4 PO4 602 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #