data_3ERC
#
_model_server_result.job_id            '_D66yvzaMSTj5uNsOogOfg' 
_model_server_result.datetime_utc      '2024-11-28 21:54:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3erc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":801}' 
#
_entry.id    3ERC 
#
_exptl.entry_id    3ERC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.52 
_cell.angle_beta          73.45 
_cell.angle_gamma         63.76 
_cell.entry_id            3ERC 
_cell.length_a            69.925 
_cell.length_b            77.153 
_cell.length_c            108.03 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ERC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,H,M,N,O,P 1 1 
B,C,F,G,I,J,K,L,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OD1 ASP 202 C ASP 202 1_555 K CA CA . C CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc2 C OD1 ASP 202 C ASP 202 1_555 L CA CA . C CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc3 C OD2 ASP 202 C ASP 202 1_555 L CA CA . C CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc4 C OD1 ASP 204 C ASP 204 1_555 K CA CA . C CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc5 C OD1 ASP 204 C ASP 204 1_555 L CA CA . C CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc6 C OD2 ASP 204 C ASP 204 1_555 L CA CA . C CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc7 C OD1 ASP 253 C ASP 253 1_555 K CA CA . C CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? 
metalc ? metalc8 C OD2 ASP 253 C ASP 253 1_555 K CA CA . C CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc9 J O1G 3AT . C 3AT 801 1_555 L CA CA . C CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc10 J O1B 3AT . C 3AT 801 1_555 L CA CA . C CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 J O1A 3AT . C 3AT 801 1_555 L CA CA . C CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc12 K CA CA . C CA 901 1_555 F O3' DC 5 F DC 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc13 D OD1 ASP 202 D ASP 202 1_555 O CA CA . D CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc14 D OD1 ASP 202 D ASP 202 1_555 P CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? 
metalc ? metalc15 D OD2 ASP 202 D ASP 202 1_555 P CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc16 D OD1 ASP 204 D ASP 204 1_555 O CA CA . D CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc17 D OD1 ASP 204 D ASP 204 1_555 P CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc18 D OD2 ASP 204 D ASP 204 1_555 P CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc19 D OD1 ASP 253 D ASP 253 1_555 O CA CA . D CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc20 D OD2 ASP 253 D ASP 253 1_555 O CA CA . D CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc21 N O1G 3AT . D 3AT 800 1_555 P CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc22 N O1B 3AT . D 3AT 800 1_555 P CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc23 N O1A 3AT . D 3AT 800 1_555 P CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc24 O CA CA . D CA 903 1_555 E O3' DC 5 E DC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                3AT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CORDYCEPIN TRIPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G 3AT doub 1 n n 
PG O2G 3AT sing 2 n n 
PG O3G 3AT sing 3 n n 
PG O3B 3AT sing 4 n n 
O2G HOG2 3AT sing 5 n n 
O3G HOG3 3AT sing 6 n n 
PB O1B 3AT doub 7 n n 
PB O2B 3AT sing 8 n n 
PB O3B 3AT sing 9 n n 
PB O3A 3AT sing 10 n n 
O2B HOB2 3AT sing 11 n n 
PA O1A 3AT doub 12 n n 
PA O2A 3AT sing 13 n n 
PA O3A 3AT sing 14 n n 
PA O5' 3AT sing 15 n n 
O2A HOA2 3AT sing 16 n n 
O5' C5' 3AT sing 17 n n 
C5' C4' 3AT sing 18 n n 
C5' "H5'1" 3AT sing 19 n n 
C5' "H5'2" 3AT sing 20 n n 
C4' O4' 3AT sing 21 n n 
C4' C3' 3AT sing 22 n n 
C4' H4' 3AT sing 23 n n 
O4' C1' 3AT sing 24 n n 
C3' C2' 3AT sing 25 n n 
C3' "H3'1" 3AT sing 26 n n 
C3' "H3'2" 3AT sing 27 n n 
C2' O2' 3AT sing 28 n n 
C2' C1' 3AT sing 29 n n 
C2' "H2'1" 3AT sing 30 n n 
O2' HO2' 3AT sing 31 n n 
C1' N9 3AT sing 32 n n 
C1' H1' 3AT sing 33 n n 
N9 C8 3AT sing 34 n y 
N9 C4 3AT sing 35 n y 
C8 N7 3AT doub 36 n y 
C8 H8 3AT sing 37 n n 
N7 C5 3AT sing 38 n y 
C5 C6 3AT sing 39 n y 
C5 C4 3AT doub 40 n y 
C6 N6 3AT sing 41 n n 
C6 N1 3AT doub 42 n y 
N6 HN61 3AT sing 43 n n 
N6 HN62 3AT sing 44 n n 
N1 C2 3AT sing 45 n y 
C2 N3 3AT doub 46 n y 
C2 H2 3AT sing 47 n n 
N3 C4 3AT sing 48 n y 
#
_atom_sites.entry_id                     3ERC 
_atom_sites.fract_transf_matrix[1][1]    0.014301 
_atom_sites.fract_transf_matrix[1][2]    -0.007049 
_atom_sites.fract_transf_matrix[1][3]    -0.005263 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01445 
_atom_sites.fract_transf_matrix[2][3]    0.001995 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 6 U5P C 1 600 600 U5P U . 
J 7 3AT C 1 801 801 3AT 3AT . 
K 8 CA C 1 901 901 CA CA . 
L 8 CA C 1 902 902 CA CA . 
M 6 U5P D 1 602 602 U5P U . 
N 7 3AT D 1 800 800 3AT 3AT . 
O 8 CA D 1 903 903 CA CA . 
P 8 CA D 1 904 904 CA CA . 
Q 9 HOH C 1 1001 1001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG 3AT . . . J 7 18.663 23.478 -48.119 1 93.08 ? PG 3AT 801 C 1 
HETATM 2 O O1G 3AT . . . J 7 17.509 24.519 -47.7 1 93.08 ? O1G 3AT 801 C 1 
HETATM 3 O O2G 3AT . . . J 7 17.967 22.016 -48.092 1 93.08 ? O2G 3AT 801 C 1 
HETATM 4 O O3G 3AT . . . J 7 19.175 23.727 -49.629 1 93.08 ? O3G 3AT 801 C 1 
HETATM 5 P PB 3AT . . . J 7 19.659 24.388 -45.666 1 93.08 ? PB 3AT 801 C 1 
HETATM 6 O O1B 3AT . . . J 7 18.693 25.481 -45.857 1 93.08 ? O1B 3AT 801 C 1 
HETATM 7 O O2B 3AT . . . J 7 21.07 24.993 -45.142 1 93.08 ? O2B 3AT 801 C 1 
HETATM 8 O O3B 3AT . . . J 7 19.927 23.548 -47.077 1 93.08 ? O3B 3AT 801 C 1 
HETATM 9 P PA 3AT . . . J 7 17.525 23.272 -44.215 1 93.08 ? PA 3AT 801 C 1 
HETATM 10 O O1A 3AT . . . J 7 16.742 23.415 -45.468 1 93.08 ? O1A 3AT 801 C 1 
HETATM 11 O O2A 3AT . . . J 7 17.103 21.881 -43.551 1 93.08 ? O2A 3AT 801 C 1 
HETATM 12 O O3A 3AT . . . J 7 19.166 23.297 -44.508 1 93.08 ? O3A 3AT 801 C 1 
HETATM 13 O O5' 3AT . . . J 7 17.086 24.325 -43.039 1 93.08 ? O5' 3AT 801 C 1 
HETATM 14 C C5' 3AT . . . J 7 18.09 25.343 -42.848 1 97.37 ? C5' 3AT 801 C 1 
HETATM 15 C C4' 3AT . . . J 7 18.612 25.484 -41.426 1 97.37 ? C4' 3AT 801 C 1 
HETATM 16 O O4' 3AT . . . J 7 17.784 24.763 -40.468 1 97.37 ? O4' 3AT 801 C 1 
HETATM 17 C C3' 3AT . . . J 7 20.083 24.983 -41.283 1 97.37 ? C3' 3AT 801 C 1 
HETATM 18 C C2' 3AT . . . J 7 19.945 23.887 -40.178 1 97.37 ? C2' 3AT 801 C 1 
HETATM 19 O O2' 3AT . . . J 7 21.073 23.819 -39.285 1 79.76 ? O2' 3AT 801 C 1 
HETATM 20 C C1' 3AT . . . J 7 18.631 24.232 -39.438 1 97.37 ? C1' 3AT 801 C 1 
HETATM 21 N N9 3AT . . . J 7 18.078 22.989 -38.814 1 93.67 ? N9 3AT 801 C 1 
HETATM 22 C C8 3AT . . . J 7 17.578 21.858 -39.437 1 93.67 ? C8 3AT 801 C 1 
HETATM 23 N N7 3AT . . . J 7 17.184 20.964 -38.581 1 93.67 ? N7 3AT 801 C 1 
HETATM 24 C C5 3AT . . . J 7 17.398 21.446 -37.335 1 93.67 ? C5 3AT 801 C 1 
HETATM 25 C C6 3AT . . . J 7 17.188 20.966 -36 1 93.67 ? C6 3AT 801 C 1 
HETATM 26 N N6 3AT . . . J 7 16.643 19.714 -35.83 1 93.67 ? N6 3AT 801 C 1 
HETATM 27 N N1 3AT . . . J 7 17.527 21.745 -34.923 1 93.67 ? N1 3AT 801 C 1 
HETATM 28 C C2 3AT . . . J 7 18.069 22.989 -35.053 1 93.67 ? C2 3AT 801 C 1 
HETATM 29 N N3 3AT . . . J 7 18.289 23.484 -36.308 1 93.67 ? N3 3AT 801 C 1 
HETATM 30 C C4 3AT . . . J 7 17.976 22.763 -37.446 1 93.67 ? C4 3AT 801 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#