data_3ERD
#
_model_server_result.job_id            v3ngiHp30USCLyEXPACmbA 
_model_server_result.datetime_utc      '2024-11-26 01:59:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3erd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":730}' 
#
_entry.id    3ERD 
#
_exptl.entry_id    3ERD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.052 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.33 
_cell.angle_gamma         90 
_cell.entry_id            3ERD 
_cell.length_a            54.094 
_cell.length_b            82.217 
_cell.length_c            58.041 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ERD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 124 B CYS 417 1_555 H CH3 ACY . B ACY 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
covale ? covale2 B SG CYS 237 B CYS 530 1_555 I CH3 ACY . B ACY 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
#
_chem_comp.formula           'C2 H4 O2' 
_chem_comp.formula_weight    60.052 
_chem_comp.id                ACY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACY doub 1 n n 
C OXT ACY sing 2 n n 
C CH3 ACY sing 3 n n 
OXT HXT ACY sing 4 n n 
CH3 H1 ACY sing 5 n n 
CH3 H2 ACY sing 6 n n 
CH3 H3 ACY sing 7 n n 
#
_atom_sites.entry_id                     3ERD 
_atom_sites.fract_transf_matrix[1][1]    0.018486 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00722 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 CL A 1 601 601 CL CL . 
F 4 DES A 1 600 600 DES DES . 
G 4 DES B 1 800 600 DES DES . 
H 5 ACY B 1 717 717 ACY CBM . 
I 5 ACY B 1 730 730 ACY CBM . 
J 6 HOH A 1 1 1 HOH HOH . 
J 6 HOH A 2 2 2 HOH HOH . 
J 6 HOH A 3 3 3 HOH HOH . 
J 6 HOH A 4 4 4 HOH HOH . 
J 6 HOH A 5 5 5 HOH HOH . 
J 6 HOH A 6 6 6 HOH HOH . 
J 6 HOH A 7 7 7 HOH HOH . 
J 6 HOH A 8 8 8 HOH HOH . 
J 6 HOH A 9 9 9 HOH HOH . 
J 6 HOH A 10 10 10 HOH HOH . 
J 6 HOH A 11 11 11 HOH HOH . 
J 6 HOH A 12 12 12 HOH HOH . 
J 6 HOH A 13 13 13 HOH HOH . 
J 6 HOH A 14 14 14 HOH HOH . 
J 6 HOH A 15 16 16 HOH HOH . 
J 6 HOH A 16 17 17 HOH HOH . 
J 6 HOH A 17 18 18 HOH HOH . 
J 6 HOH A 18 19 19 HOH HOH . 
J 6 HOH A 19 20 20 HOH HOH . 
J 6 HOH A 20 22 22 HOH HOH . 
J 6 HOH A 21 23 23 HOH HOH . 
J 6 HOH A 22 24 24 HOH HOH . 
J 6 HOH A 23 25 25 HOH HOH . 
J 6 HOH A 24 27 27 HOH HOH . 
J 6 HOH A 25 28 28 HOH HOH . 
J 6 HOH A 26 29 29 HOH HOH . 
J 6 HOH A 27 30 30 HOH HOH . 
J 6 HOH A 28 31 31 HOH HOH . 
J 6 HOH A 29 32 32 HOH HOH . 
J 6 HOH A 30 33 33 HOH HOH . 
J 6 HOH A 31 34 34 HOH HOH . 
J 6 HOH A 32 35 35 HOH HOH . 
J 6 HOH A 33 36 36 HOH HOH . 
J 6 HOH A 34 37 37 HOH HOH . 
J 6 HOH A 35 38 38 HOH HOH . 
J 6 HOH A 36 39 39 HOH HOH . 
J 6 HOH A 37 40 40 HOH HOH . 
J 6 HOH A 38 41 41 HOH HOH . 
J 6 HOH A 39 42 42 HOH HOH . 
J 6 HOH A 40 43 43 HOH HOH . 
J 6 HOH A 41 64 64 HOH HOH . 
J 6 HOH A 42 69 69 HOH HOH . 
J 6 HOH A 43 80 80 HOH HOH . 
J 6 HOH A 44 91 91 HOH HOH . 
J 6 HOH A 45 93 93 HOH HOH . 
J 6 HOH A 46 99 99 HOH HOH . 
J 6 HOH A 47 100 100 HOH HOH . 
J 6 HOH A 48 101 101 HOH HOH . 
J 6 HOH A 49 107 107 HOH HOH . 
J 6 HOH A 50 110 110 HOH HOH . 
J 6 HOH A 51 111 111 HOH HOH . 
J 6 HOH A 52 112 112 HOH HOH . 
J 6 HOH A 53 113 113 HOH HOH . 
J 6 HOH A 54 114 114 HOH HOH . 
J 6 HOH A 55 115 115 HOH HOH . 
J 6 HOH A 56 116 116 HOH HOH . 
J 6 HOH A 57 117 117 HOH HOH . 
J 6 HOH A 58 118 118 HOH HOH . 
J 6 HOH A 59 119 119 HOH HOH . 
J 6 HOH A 60 120 120 HOH HOH . 
J 6 HOH A 61 121 121 HOH HOH . 
J 6 HOH A 62 128 128 HOH HOH . 
J 6 HOH A 63 130 130 HOH HOH . 
J 6 HOH A 64 131 131 HOH HOH . 
J 6 HOH A 65 133 133 HOH HOH . 
J 6 HOH A 66 142 142 HOH HOH . 
J 6 HOH A 67 146 146 HOH HOH . 
J 6 HOH A 68 147 147 HOH HOH . 
K 6 HOH B 1 15 15 HOH HOH . 
K 6 HOH B 2 21 21 HOH HOH . 
K 6 HOH B 3 26 26 HOH HOH . 
K 6 HOH B 4 44 44 HOH HOH . 
K 6 HOH B 5 45 45 HOH HOH . 
K 6 HOH B 6 46 46 HOH HOH . 
K 6 HOH B 7 47 47 HOH HOH . 
K 6 HOH B 8 48 48 HOH HOH . 
K 6 HOH B 9 49 49 HOH HOH . 
K 6 HOH B 10 50 50 HOH HOH . 
K 6 HOH B 11 51 51 HOH HOH . 
K 6 HOH B 12 52 52 HOH HOH . 
K 6 HOH B 13 53 53 HOH HOH . 
K 6 HOH B 14 54 54 HOH HOH . 
K 6 HOH B 15 55 55 HOH HOH . 
K 6 HOH B 16 56 56 HOH HOH . 
K 6 HOH B 17 57 57 HOH HOH . 
K 6 HOH B 18 58 58 HOH HOH . 
K 6 HOH B 19 59 59 HOH HOH . 
K 6 HOH B 20 60 60 HOH HOH . 
K 6 HOH B 21 61 61 HOH HOH . 
K 6 HOH B 22 62 62 HOH HOH . 
K 6 HOH B 23 63 63 HOH HOH . 
K 6 HOH B 24 65 65 HOH HOH . 
K 6 HOH B 25 66 66 HOH HOH . 
K 6 HOH B 26 67 67 HOH HOH . 
K 6 HOH B 27 68 68 HOH HOH . 
K 6 HOH B 28 70 70 HOH HOH . 
K 6 HOH B 29 71 71 HOH HOH . 
K 6 HOH B 30 72 72 HOH HOH . 
K 6 HOH B 31 73 73 HOH HOH . 
K 6 HOH B 32 74 74 HOH HOH . 
K 6 HOH B 33 75 75 HOH HOH . 
K 6 HOH B 34 76 76 HOH HOH . 
K 6 HOH B 35 77 77 HOH HOH . 
K 6 HOH B 36 78 78 HOH HOH . 
K 6 HOH B 37 79 79 HOH HOH . 
K 6 HOH B 38 81 81 HOH HOH . 
K 6 HOH B 39 82 82 HOH HOH . 
K 6 HOH B 40 83 83 HOH HOH . 
K 6 HOH B 41 84 84 HOH HOH . 
K 6 HOH B 42 85 85 HOH HOH . 
K 6 HOH B 43 86 86 HOH HOH . 
K 6 HOH B 44 87 87 HOH HOH . 
K 6 HOH B 45 88 88 HOH HOH . 
K 6 HOH B 46 92 92 HOH HOH . 
K 6 HOH B 47 94 94 HOH HOH . 
K 6 HOH B 48 95 95 HOH HOH . 
K 6 HOH B 49 96 96 HOH HOH . 
K 6 HOH B 50 97 97 HOH HOH . 
K 6 HOH B 51 98 98 HOH HOH . 
K 6 HOH B 52 102 102 HOH HOH . 
K 6 HOH B 53 103 103 HOH HOH . 
K 6 HOH B 54 104 104 HOH HOH . 
K 6 HOH B 55 105 105 HOH HOH . 
K 6 HOH B 56 106 106 HOH HOH . 
K 6 HOH B 57 108 108 HOH HOH . 
K 6 HOH B 58 109 109 HOH HOH . 
K 6 HOH B 59 122 122 HOH HOH . 
K 6 HOH B 60 123 123 HOH HOH . 
K 6 HOH B 61 124 124 HOH HOH . 
K 6 HOH B 62 125 125 HOH HOH . 
K 6 HOH B 63 126 126 HOH HOH . 
K 6 HOH B 64 127 127 HOH HOH . 
K 6 HOH B 65 129 129 HOH HOH . 
K 6 HOH B 66 132 132 HOH HOH . 
K 6 HOH B 67 134 134 HOH HOH . 
K 6 HOH B 68 135 135 HOH HOH . 
K 6 HOH B 69 136 136 HOH HOH . 
K 6 HOH B 70 137 137 HOH HOH . 
K 6 HOH B 71 138 138 HOH HOH . 
K 6 HOH B 72 139 139 HOH HOH . 
K 6 HOH B 73 140 140 HOH HOH . 
K 6 HOH B 74 141 141 HOH HOH . 
K 6 HOH B 75 143 143 HOH HOH . 
K 6 HOH B 76 144 144 HOH HOH . 
K 6 HOH B 77 145 145 HOH HOH . 
L 6 HOH D 1 89 89 HOH HOH . 
L 6 HOH D 2 90 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACY . . . I 5 -15.43 -5.173 10.44 1 79.79 ? C ACY 730 B 1 
HETATM 2 O O ACY . . . I 5 -16.378 -4.963 11.227 1 81.22 ? O ACY 730 B 1 
HETATM 3 O OXT ACY . . . I 5 -15.554 -5.176 9.195 1 81.8 ? OXT ACY 730 B 1 
HETATM 4 C CH3 ACY . . . I 5 -14.072 -5.438 11.014 1 76.04 ? CH3 ACY 730 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           367 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#