data_3ERK # _model_server_result.job_id iyD6gEgAGX0BfWR9fOuYSQ _model_server_result.datetime_utc '2024-11-18 14:28:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3erk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 3ERK # _exptl.entry_id 3ERK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.382 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-FLUOROPHENYL)-1-(4-PIPERIDINYL)-5-(2-AMINO-4-PYRIMIDINYL)-IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.2 _cell.angle_gamma 90 _cell.entry_id 3ERK _cell.length_a 48.85 _cell.length_b 70 _cell.length_c 60.7 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ERK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H19 F N6' _chem_comp.formula_weight 338.382 _chem_comp.id SB4 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-FLUOROPHENYL)-1-(4-PIPERIDINYL)-5-(2-AMINO-4-PYRIMIDINYL)-IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SB220025 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 SB4 sing 277 n n CA1 CA6 SB4 sing 278 n n CA1 H11 SB4 sing 279 n n CA1 H12 SB4 sing 280 n n CA2 NA3 SB4 sing 281 n n CA2 H21 SB4 sing 282 n n CA2 H22 SB4 sing 283 n n NA3 CA4 SB4 sing 284 n n NA3 HN3 SB4 sing 285 n n CA4 CA5 SB4 sing 286 n n CA4 H41 SB4 sing 287 n n CA4 H42 SB4 sing 288 n n CA5 CA6 SB4 sing 289 n n CA5 H51 SB4 sing 290 n n CA5 H52 SB4 sing 291 n n CA6 ND1 SB4 sing 292 n n CA6 H6 SB4 sing 293 n n CB1 CB2 SB4 doub 294 n y CB1 CB6 SB4 sing 295 n y CB1 HB1 SB4 sing 296 n n CB2 CB3 SB4 sing 297 n y CB2 HB2 SB4 sing 298 n n CB3 CB4 SB4 doub 299 n y CB3 FB7 SB4 sing 300 n n CB4 CB5 SB4 sing 301 n y CB4 HB4 SB4 sing 302 n n CB5 CB6 SB4 doub 303 n y CB5 HB5 SB4 sing 304 n n CB6 CD4 SB4 sing 305 n y CC1 CC2 SB4 sing 306 n y CC1 CC6 SB4 doub 307 n y CC1 HC1 SB4 sing 308 n n CC2 NC3 SB4 doub 309 n y CC2 CD5 SB4 sing 310 n y NC3 CC4 SB4 sing 311 n y CC4 NC5 SB4 doub 312 n y CC4 NC7 SB4 sing 313 n n NC5 CC6 SB4 sing 314 n y CC6 HC6 SB4 sing 315 n n NC7 HN71 SB4 sing 316 n n NC7 HN72 SB4 sing 317 n n ND1 CD2 SB4 sing 318 n y ND1 CD5 SB4 sing 319 n y CD2 ND3 SB4 doub 320 n y CD2 H2 SB4 sing 321 n n ND3 CD4 SB4 sing 322 n y CD4 CD5 SB4 doub 323 n y # _atom_sites.entry_id 3ERK _atom_sites.fract_transf_matrix[1][1] 0.020471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007129 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SB4 A 1 800 800 SB4 SB4 . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 421 421 HOH HOH . C 3 HOH A 22 422 422 HOH HOH . C 3 HOH A 23 423 423 HOH HOH . C 3 HOH A 24 424 424 HOH HOH . C 3 HOH A 25 425 425 HOH HOH . C 3 HOH A 26 426 426 HOH HOH . C 3 HOH A 27 427 427 HOH HOH . C 3 HOH A 28 428 428 HOH HOH . C 3 HOH A 29 429 429 HOH HOH . C 3 HOH A 30 430 430 HOH HOH . C 3 HOH A 31 431 431 HOH HOH . C 3 HOH A 32 432 432 HOH HOH . C 3 HOH A 33 433 433 HOH HOH . C 3 HOH A 34 434 434 HOH HOH . C 3 HOH A 35 435 435 HOH HOH . C 3 HOH A 36 436 436 HOH HOH . C 3 HOH A 37 437 437 HOH HOH . C 3 HOH A 38 438 438 HOH HOH . C 3 HOH A 39 439 439 HOH HOH . C 3 HOH A 40 440 440 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 443 443 HOH HOH . C 3 HOH A 44 444 444 HOH HOH . C 3 HOH A 45 445 445 HOH HOH . C 3 HOH A 46 446 446 HOH HOH . C 3 HOH A 47 447 447 HOH HOH . C 3 HOH A 48 448 448 HOH HOH . C 3 HOH A 49 449 449 HOH HOH . C 3 HOH A 50 450 450 HOH HOH . C 3 HOH A 51 451 451 HOH HOH . C 3 HOH A 52 452 452 HOH HOH . C 3 HOH A 53 453 453 HOH HOH . C 3 HOH A 54 454 454 HOH HOH . C 3 HOH A 55 455 455 HOH HOH . C 3 HOH A 56 456 456 HOH HOH . C 3 HOH A 57 457 457 HOH HOH . C 3 HOH A 58 458 458 HOH HOH . C 3 HOH A 59 459 459 HOH HOH . C 3 HOH A 60 460 460 HOH HOH . C 3 HOH A 61 461 461 HOH HOH . C 3 HOH A 62 462 462 HOH HOH . C 3 HOH A 63 463 463 HOH HOH . C 3 HOH A 64 464 464 HOH HOH . C 3 HOH A 65 465 465 HOH HOH . C 3 HOH A 66 467 467 HOH HOH . C 3 HOH A 67 468 468 HOH HOH . C 3 HOH A 68 469 469 HOH HOH . C 3 HOH A 69 470 470 HOH HOH . C 3 HOH A 70 471 471 HOH HOH . C 3 HOH A 71 472 472 HOH HOH . C 3 HOH A 72 473 473 HOH HOH . C 3 HOH A 73 474 474 HOH HOH . C 3 HOH A 74 475 475 HOH HOH . C 3 HOH A 75 476 476 HOH HOH . C 3 HOH A 76 477 477 HOH HOH . C 3 HOH A 77 478 478 HOH HOH . C 3 HOH A 78 479 479 HOH HOH . C 3 HOH A 79 480 480 HOH HOH . C 3 HOH A 80 481 481 HOH HOH . C 3 HOH A 81 483 483 HOH HOH . C 3 HOH A 82 484 484 HOH HOH . C 3 HOH A 83 485 485 HOH HOH . C 3 HOH A 84 486 486 HOH HOH . C 3 HOH A 85 487 487 HOH HOH . C 3 HOH A 86 488 488 HOH HOH . C 3 HOH A 87 489 489 HOH HOH . C 3 HOH A 88 490 490 HOH HOH . C 3 HOH A 89 493 493 HOH HOH . C 3 HOH A 90 494 494 HOH HOH . C 3 HOH A 91 495 495 HOH HOH . C 3 HOH A 92 496 496 HOH HOH . C 3 HOH A 93 497 497 HOH HOH . C 3 HOH A 94 499 499 HOH HOH . C 3 HOH A 95 500 500 HOH HOH . C 3 HOH A 96 501 501 HOH HOH . C 3 HOH A 97 502 502 HOH HOH . C 3 HOH A 98 503 503 HOH HOH . C 3 HOH A 99 504 504 HOH HOH . C 3 HOH A 100 505 505 HOH HOH . C 3 HOH A 101 506 506 HOH HOH . C 3 HOH A 102 507 507 HOH HOH . C 3 HOH A 103 508 508 HOH HOH . C 3 HOH A 104 509 509 HOH HOH . C 3 HOH A 105 510 510 HOH HOH . C 3 HOH A 106 511 511 HOH HOH . C 3 HOH A 107 512 512 HOH HOH . C 3 HOH A 108 513 513 HOH HOH . C 3 HOH A 109 514 514 HOH HOH . C 3 HOH A 110 515 515 HOH HOH . C 3 HOH A 111 516 516 HOH HOH . C 3 HOH A 112 517 517 HOH HOH . C 3 HOH A 113 518 518 HOH HOH . C 3 HOH A 114 519 519 HOH HOH . C 3 HOH A 115 521 521 HOH HOH . C 3 HOH A 116 522 522 HOH HOH . C 3 HOH A 117 523 523 HOH HOH . C 3 HOH A 118 524 524 HOH HOH . C 3 HOH A 119 525 525 HOH HOH . C 3 HOH A 120 526 526 HOH HOH . C 3 HOH A 121 527 527 HOH HOH . C 3 HOH A 122 528 528 HOH HOH . C 3 HOH A 123 530 530 HOH HOH . C 3 HOH A 124 531 531 HOH HOH . C 3 HOH A 125 532 532 HOH HOH . C 3 HOH A 126 533 533 HOH HOH . C 3 HOH A 127 538 538 HOH HOH . C 3 HOH A 128 541 541 HOH HOH . C 3 HOH A 129 542 542 HOH HOH . C 3 HOH A 130 543 543 HOH HOH . C 3 HOH A 131 546 546 HOH HOH . C 3 HOH A 132 552 552 HOH HOH . C 3 HOH A 133 555 555 HOH HOH . C 3 HOH A 134 556 556 HOH HOH . C 3 HOH A 135 558 558 HOH HOH . C 3 HOH A 136 559 559 HOH HOH . C 3 HOH A 137 561 561 HOH HOH . C 3 HOH A 138 562 562 HOH HOH . C 3 HOH A 139 567 567 HOH HOH . C 3 HOH A 140 569 569 HOH HOH . C 3 HOH A 141 570 570 HOH HOH . C 3 HOH A 142 572 572 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 SB4 . . . B 2 -12.988 14.797 44.398 1 32.02 ? CA1 SB4 800 A 1 HETATM 2 C CA2 SB4 . . . B 2 -13.253 15.175 45.876 1 32.51 ? CA2 SB4 800 A 1 HETATM 3 N NA3 SB4 . . . B 2 -13.072 16.651 46.148 1 38.41 ? NA3 SB4 800 A 1 HETATM 4 C CA4 SB4 . . . B 2 -13.75 17.615 45.199 1 36.59 ? CA4 SB4 800 A 1 HETATM 5 C CA5 SB4 . . . B 2 -13.572 17.21 43.7 1 33.26 ? CA5 SB4 800 A 1 HETATM 6 C CA6 SB4 . . . B 2 -13.809 15.692 43.414 1 32.34 ? CA6 SB4 800 A 1 HETATM 7 C CB1 SB4 . . . B 2 -14.536 13.21 37.975 1 23.93 ? CB1 SB4 800 A 1 HETATM 8 C CB2 SB4 . . . B 2 -14.558 12.314 36.878 1 25.7 ? CB2 SB4 800 A 1 HETATM 9 C CB3 SB4 . . . B 2 -13.369 11.665 36.479 1 23.63 ? CB3 SB4 800 A 1 HETATM 10 C CB4 SB4 . . . B 2 -12.163 11.904 37.159 1 22.58 ? CB4 SB4 800 A 1 HETATM 11 C CB5 SB4 . . . B 2 -12.135 12.795 38.253 1 23.41 ? CB5 SB4 800 A 1 HETATM 12 C CB6 SB4 . . . B 2 -13.322 13.475 38.695 1 21.71 ? CB6 SB4 800 A 1 HETATM 13 F FB7 SB4 . . . B 2 -13.382 10.807 35.438 1 23.1 ? FB7 SB4 800 A 1 HETATM 14 C CC1 SB4 . . . B 2 -16.549 14.381 41.775 1 24.34 ? CC1 SB4 800 A 1 HETATM 15 C CC2 SB4 . . . B 2 -15.352 13.693 41.306 1 26.21 ? CC2 SB4 800 A 1 HETATM 16 N NC3 SB4 . . . B 2 -15.402 12.342 41.087 1 24.23 ? NC3 SB4 800 A 1 HETATM 17 C CC4 SB4 . . . B 2 -16.545 11.689 41.309 1 26.38 ? CC4 SB4 800 A 1 HETATM 18 N NC5 SB4 . . . B 2 -17.691 12.234 41.74 1 23.82 ? NC5 SB4 800 A 1 HETATM 19 C CC6 SB4 . . . B 2 -17.711 13.564 41.977 1 21.51 ? CC6 SB4 800 A 1 HETATM 20 N NC7 SB4 . . . B 2 -16.542 10.396 41.079 1 23 ? NC7 SB4 800 A 1 HETATM 21 N ND1 SB4 . . . B 2 -13.474 15.284 42.005 1 28.24 ? ND1 SB4 800 A 1 HETATM 22 C CD2 SB4 . . . B 2 -12.375 15.663 41.265 1 24.93 ? CD2 SB4 800 A 1 HETATM 23 N ND3 SB4 . . . B 2 -12.151 15.21 40.016 1 24.31 ? ND3 SB4 800 A 1 HETATM 24 C CD4 SB4 . . . B 2 -13.261 14.366 39.826 1 25.28 ? CD4 SB4 800 A 1 HETATM 25 C CD5 SB4 . . . B 2 -14.109 14.414 41.057 1 26.44 ? CD5 SB4 800 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #