data_3ERR
#
_model_server_result.job_id            tPHkpbO95RQCJNiL0sA9qQ 
_model_server_result.datetime_utc      '2024-11-12 20:40:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3err 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1508}' 
#
_entry.id    3ERR 
#
_exptl.entry_id    3ERR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ERR 
_cell.length_a            144.302 
_cell.length_b            144.302 
_cell.length_c            159.946 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ERR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     3ERR 
_atom_sites.fract_transf_matrix[1][1]    0.00693 
_atom_sites.fract_transf_matrix[1][2]    0.004001 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006252 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 1507 1507 AMP AMP . 
D 2 AMP B 1 1508 1508 AMP AMP . 
E 3 HOH A 1 3428 4 HOH HOH . 
E 3 HOH A 2 3429 8 HOH HOH . 
E 3 HOH A 3 3430 13 HOH HOH . 
E 3 HOH A 4 3431 14 HOH HOH . 
E 3 HOH A 5 3432 15 HOH HOH . 
E 3 HOH A 6 3433 16 HOH HOH . 
E 3 HOH A 7 3434 17 HOH HOH . 
E 3 HOH A 8 3435 18 HOH HOH . 
E 3 HOH A 9 3436 19 HOH HOH . 
E 3 HOH A 10 3437 20 HOH HOH . 
E 3 HOH A 11 3438 21 HOH HOH . 
E 3 HOH A 12 3439 22 HOH HOH . 
E 3 HOH A 13 3440 23 HOH HOH . 
E 3 HOH A 14 3441 24 HOH HOH . 
E 3 HOH A 15 3442 25 HOH HOH . 
E 3 HOH A 16 3443 26 HOH HOH . 
E 3 HOH A 17 3444 27 HOH HOH . 
E 3 HOH A 18 3445 29 HOH HOH . 
E 3 HOH A 19 3446 30 HOH HOH . 
E 3 HOH A 20 3447 36 HOH HOH . 
E 3 HOH A 21 3448 41 HOH HOH . 
E 3 HOH A 22 3449 48 HOH HOH . 
E 3 HOH A 23 3450 49 HOH HOH . 
E 3 HOH A 24 3451 50 HOH HOH . 
E 3 HOH A 25 3452 54 HOH HOH . 
E 3 HOH A 26 3453 57 HOH HOH . 
E 3 HOH A 27 3454 58 HOH HOH . 
E 3 HOH A 28 3455 59 HOH HOH . 
E 3 HOH A 29 3456 63 HOH HOH . 
E 3 HOH A 30 3457 72 HOH HOH . 
E 3 HOH A 31 3458 73 HOH HOH . 
E 3 HOH A 32 3459 74 HOH HOH . 
E 3 HOH A 33 3460 75 HOH HOH . 
E 3 HOH A 34 3461 76 HOH HOH . 
E 3 HOH A 35 3462 77 HOH HOH . 
E 3 HOH A 36 3463 78 HOH HOH . 
E 3 HOH A 37 3464 79 HOH HOH . 
E 3 HOH A 38 3465 81 HOH HOH . 
E 3 HOH A 39 3466 82 HOH HOH . 
E 3 HOH A 40 3467 85 HOH HOH . 
E 3 HOH A 41 3468 86 HOH HOH . 
E 3 HOH A 42 3469 87 HOH HOH . 
E 3 HOH A 43 3470 88 HOH HOH . 
E 3 HOH A 44 3471 91 HOH HOH . 
E 3 HOH A 45 3472 92 HOH HOH . 
E 3 HOH A 46 3473 93 HOH HOH . 
E 3 HOH A 47 3474 106 HOH HOH . 
E 3 HOH A 48 3475 107 HOH HOH . 
E 3 HOH A 49 3476 108 HOH HOH . 
E 3 HOH A 50 3477 109 HOH HOH . 
E 3 HOH A 51 3478 110 HOH HOH . 
E 3 HOH A 52 3479 111 HOH HOH . 
E 3 HOH A 53 3480 112 HOH HOH . 
E 3 HOH A 54 3481 113 HOH HOH . 
E 3 HOH A 55 3482 114 HOH HOH . 
E 3 HOH A 56 3483 115 HOH HOH . 
E 3 HOH A 57 3484 116 HOH HOH . 
E 3 HOH A 58 3485 117 HOH HOH . 
E 3 HOH A 59 3486 118 HOH HOH . 
E 3 HOH A 60 3487 119 HOH HOH . 
E 3 HOH A 61 3488 120 HOH HOH . 
E 3 HOH A 62 3489 121 HOH HOH . 
E 3 HOH A 63 3490 122 HOH HOH . 
E 3 HOH A 64 3491 123 HOH HOH . 
E 3 HOH A 65 3492 124 HOH HOH . 
E 3 HOH A 66 3493 125 HOH HOH . 
E 3 HOH A 67 3494 126 HOH HOH . 
E 3 HOH A 68 3495 127 HOH HOH . 
E 3 HOH A 69 3496 128 HOH HOH . 
E 3 HOH A 70 3497 129 HOH HOH . 
E 3 HOH A 71 3498 132 HOH HOH . 
F 3 HOH B 1 3428 2 HOH HOH . 
F 3 HOH B 2 3429 3 HOH HOH . 
F 3 HOH B 3 3430 5 HOH HOH . 
F 3 HOH B 4 3431 6 HOH HOH . 
F 3 HOH B 5 3432 7 HOH HOH . 
F 3 HOH B 6 3433 9 HOH HOH . 
F 3 HOH B 7 3434 10 HOH HOH . 
F 3 HOH B 8 3435 11 HOH HOH . 
F 3 HOH B 9 3436 12 HOH HOH . 
F 3 HOH B 10 3437 28 HOH HOH . 
F 3 HOH B 11 3438 31 HOH HOH . 
F 3 HOH B 12 3439 32 HOH HOH . 
F 3 HOH B 13 3440 33 HOH HOH . 
F 3 HOH B 14 3441 34 HOH HOH . 
F 3 HOH B 15 3442 35 HOH HOH . 
F 3 HOH B 16 3443 37 HOH HOH . 
F 3 HOH B 17 3444 38 HOH HOH . 
F 3 HOH B 18 3445 40 HOH HOH . 
F 3 HOH B 19 3446 42 HOH HOH . 
F 3 HOH B 20 3447 43 HOH HOH . 
F 3 HOH B 21 3448 45 HOH HOH . 
F 3 HOH B 22 3449 46 HOH HOH . 
F 3 HOH B 23 3450 47 HOH HOH . 
F 3 HOH B 24 3451 51 HOH HOH . 
F 3 HOH B 25 3452 53 HOH HOH . 
F 3 HOH B 26 3453 55 HOH HOH . 
F 3 HOH B 27 3454 56 HOH HOH . 
F 3 HOH B 28 3455 61 HOH HOH . 
F 3 HOH B 29 3456 64 HOH HOH . 
F 3 HOH B 30 3457 65 HOH HOH . 
F 3 HOH B 31 3458 66 HOH HOH . 
F 3 HOH B 32 3459 67 HOH HOH . 
F 3 HOH B 33 3460 68 HOH HOH . 
F 3 HOH B 34 3461 70 HOH HOH . 
F 3 HOH B 35 3462 71 HOH HOH . 
F 3 HOH B 36 3463 80 HOH HOH . 
F 3 HOH B 37 3464 83 HOH HOH . 
F 3 HOH B 38 3465 84 HOH HOH . 
F 3 HOH B 39 3466 89 HOH HOH . 
F 3 HOH B 40 3467 90 HOH HOH . 
F 3 HOH B 41 3468 94 HOH HOH . 
F 3 HOH B 42 3469 95 HOH HOH . 
F 3 HOH B 43 3470 96 HOH HOH . 
F 3 HOH B 44 3471 97 HOH HOH . 
F 3 HOH B 45 3472 98 HOH HOH . 
F 3 HOH B 46 3473 99 HOH HOH . 
F 3 HOH B 47 3474 100 HOH HOH . 
F 3 HOH B 48 3475 101 HOH HOH . 
F 3 HOH B 49 3476 103 HOH HOH . 
F 3 HOH B 50 3477 105 HOH HOH . 
F 3 HOH B 51 3478 130 HOH HOH . 
F 3 HOH B 52 3479 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . D 2 57.772 13.458 54.88 1 92.18 ? P AMP 1508 B 1 
HETATM 2 O O1P AMP . . . D 2 56.416 13.311 54.194 1 90.12 ? O1P AMP 1508 B 1 
HETATM 3 O O2P AMP . . . D 2 57.864 14.629 55.844 1 90.39 ? O2P AMP 1508 B 1 
HETATM 4 O O3P AMP . . . D 2 58.936 13.349 53.908 1 92.53 ? O3P AMP 1508 B 1 
HETATM 5 O O5' AMP . . . D 2 58.018 12.137 55.795 1 87.89 ? O5' AMP 1508 B 1 
HETATM 6 C C5' AMP . . . D 2 57.671 12.041 57.175 1 82.48 ? C5' AMP 1508 B 1 
HETATM 7 C C4' AMP . . . D 2 57.94 10.623 57.668 1 79.12 ? C4' AMP 1508 B 1 
HETATM 8 O O4' AMP . . . D 2 57.739 9.604 56.659 1 76.31 ? O4' AMP 1508 B 1 
HETATM 9 C C3' AMP . . . D 2 59.407 10.409 58.086 1 77.48 ? C3' AMP 1508 B 1 
HETATM 10 O O3' AMP . . . D 2 59.841 11.15 59.246 1 75.88 ? O3' AMP 1508 B 1 
HETATM 11 C C2' AMP . . . D 2 59.466 8.886 58.169 1 74.86 ? C2' AMP 1508 B 1 
HETATM 12 O O2' AMP . . . D 2 58.625 8.275 59.165 1 69.64 ? O2' AMP 1508 B 1 
HETATM 13 C C1' AMP . . . D 2 58.707 8.551 56.894 1 74.53 ? C1' AMP 1508 B 1 
HETATM 14 N N9 AMP . . . D 2 59.647 8.305 55.753 1 72.74 ? N9 AMP 1508 B 1 
HETATM 15 C C8 AMP . . . D 2 60.087 9.232 54.856 1 71.02 ? C8 AMP 1508 B 1 
HETATM 16 N N7 AMP . . . D 2 60.923 8.659 53.952 1 68.09 ? N7 AMP 1508 B 1 
HETATM 17 C C5 AMP . . . D 2 61.046 7.343 54.264 1 67.52 ? C5 AMP 1508 B 1 
HETATM 18 C C6 AMP . . . D 2 61.771 6.174 53.683 1 64.49 ? C6 AMP 1508 B 1 
HETATM 19 N N6 AMP . . . D 2 62.552 6.325 52.573 1 63.55 ? N6 AMP 1508 B 1 
HETATM 20 N N1 AMP . . . D 2 61.629 4.99 54.312 1 64.32 ? N1 AMP 1508 B 1 
HETATM 21 C C2 AMP . . . D 2 60.853 4.833 55.418 1 65.89 ? C2 AMP 1508 B 1 
HETATM 22 N N3 AMP . . . D 2 60.136 5.842 55.985 1 65.4 ? N3 AMP 1508 B 1 
HETATM 23 C C4 AMP . . . D 2 60.202 7.102 55.46 1 68.75 ? C4 AMP 1508 B 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#