data_3ES3 # _model_server_result.job_id B2i_hEJWqNNfQMQVCcNnuQ _model_server_result.datetime_utc '2024-11-14 18:08:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3es3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":735}' # _entry.id 3ES3 # _exptl.entry_id 3ES3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ES3 _cell.length_a 181.564 _cell.length_b 181.564 _cell.length_c 181.564 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ES3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -181.564 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -181.564 0 5 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 6 'crystal symmetry operation' 22_545 z,-y-1,x 0 0 1 0 -1 0 1 0 0 0 -181.564 0 7 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 8 'crystal symmetry operation' 24_545 -z,-y-1,-x 0 0 -1 0 -1 0 -1 0 0 0 -181.564 0 9 'crystal symmetry operation' 29_545 z,x-1/2,y+1/2 0 0 1 1 0 0 0 1 0 0 -90.782 90.782 10 'crystal symmetry operation' 30_544 z,-x-1/2,-y-1/2 0 0 1 -1 0 0 0 -1 0 0 -90.782 -90.782 11 'crystal symmetry operation' 31_545 -z,-x-1/2,y+1/2 0 0 -1 -1 0 0 0 1 0 0 -90.782 90.782 12 'crystal symmetry operation' 32_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -90.782 -90.782 13 'crystal symmetry operation' 41_544 x,z-1/2,-y-1/2 1 0 0 0 0 1 0 -1 0 0 -90.782 -90.782 14 'crystal symmetry operation' 42_545 -x,z-1/2,y+1/2 -1 0 0 0 0 1 0 1 0 0 -90.782 90.782 15 'crystal symmetry operation' 43_544 -x,-z-1/2,-y-1/2 -1 0 0 0 0 -1 0 -1 0 0 -90.782 -90.782 16 'crystal symmetry operation' 44_545 x,-z-1/2,y+1/2 1 0 0 0 0 -1 0 1 0 0 -90.782 90.782 17 'crystal symmetry operation' 81_545 y+1/2,z-1/2,x 0 1 0 0 0 1 1 0 0 90.782 -90.782 0 18 'crystal symmetry operation' 82_445 -y-1/2,z-1/2,-x 0 -1 0 0 0 1 -1 0 0 -90.782 -90.782 0 19 'crystal symmetry operation' 83_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 90.782 -90.782 0 20 'crystal symmetry operation' 84_445 -y-1/2,-z-1/2,x 0 -1 0 0 0 -1 1 0 0 -90.782 -90.782 0 21 'crystal symmetry operation' 85_545 y+1/2,x-1/2,-z 0 1 0 1 0 0 0 0 -1 90.782 -90.782 0 22 'crystal symmetry operation' 86_445 -y-1/2,-x-1/2,-z 0 -1 0 -1 0 0 0 0 -1 -90.782 -90.782 0 23 'crystal symmetry operation' 87_545 y+1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 90.782 -90.782 0 24 'crystal symmetry operation' 88_445 -y-1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 -90.782 -90.782 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 58 A HIS 57 1_555 B AU AU . A AU 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc2 A ND1 HIS 61 A HIS 60 1_555 B AU AU . A AU 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc3 A OE1 GLN 87 A GLN 86 1_555 G CA CA . A CA 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc4 A ND1 HIS 119 A HIS 118 1_555 D AU AU . A AU 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc5 A OD1 ASP 132 A ASP 131 1_555 F CA CA . A CA 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc6 A OE1 GLU 135 A GLU 134 1_555 F CA CA . A CA 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc7 A SG CYS 141 A CYS 140 1_555 C AU AU . A AU 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc8 A NE2 HIS 174 A HIS 173 1_555 E AU AU . A AU 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ES3 _atom_sites.fract_transf_matrix[1][1] 0.005508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AU A 1 731 731 AU AU . C 2 AU A 1 732 732 AU AU . D 2 AU A 1 733 733 AU AU . E 2 AU A 1 734 734 AU AU . F 3 CA A 1 735 735 CA CA . G 3 CA A 1 736 736 CA CA . H 4 HOH A 1 737 737 HOH HOH . H 4 HOH A 2 738 738 HOH HOH . H 4 HOH A 3 739 739 HOH HOH . H 4 HOH A 4 740 740 HOH HOH . H 4 HOH A 5 741 741 HOH HOH . H 4 HOH A 6 742 742 HOH HOH . H 4 HOH A 7 743 743 HOH HOH . H 4 HOH A 8 744 744 HOH HOH . H 4 HOH A 9 745 745 HOH HOH . H 4 HOH A 10 746 746 HOH HOH . H 4 HOH A 11 747 747 HOH HOH . H 4 HOH A 12 748 748 HOH HOH . H 4 HOH A 13 749 749 HOH HOH . H 4 HOH A 14 750 750 HOH HOH . H 4 HOH A 15 751 751 HOH HOH . H 4 HOH A 16 752 752 HOH HOH . H 4 HOH A 17 753 753 HOH HOH . H 4 HOH A 18 754 754 HOH HOH . H 4 HOH A 19 755 755 HOH HOH . H 4 HOH A 20 756 756 HOH HOH . H 4 HOH A 21 757 757 HOH HOH . H 4 HOH A 22 758 758 HOH HOH . H 4 HOH A 23 759 759 HOH HOH . H 4 HOH A 24 760 760 HOH HOH . H 4 HOH A 25 761 761 HOH HOH . H 4 HOH A 26 762 762 HOH HOH . H 4 HOH A 27 763 763 HOH HOH . H 4 HOH A 28 764 764 HOH HOH . H 4 HOH A 29 765 765 HOH HOH . H 4 HOH A 30 766 766 HOH HOH . H 4 HOH A 31 767 767 HOH HOH . H 4 HOH A 32 768 768 HOH HOH . H 4 HOH A 33 769 769 HOH HOH . H 4 HOH A 34 770 770 HOH HOH . H 4 HOH A 35 771 771 HOH HOH . H 4 HOH A 36 772 772 HOH HOH . H 4 HOH A 37 773 773 HOH HOH . H 4 HOH A 38 774 774 HOH HOH . H 4 HOH A 39 775 775 HOH HOH . H 4 HOH A 40 776 776 HOH HOH . H 4 HOH A 41 777 777 HOH HOH . H 4 HOH A 42 778 778 HOH HOH . H 4 HOH A 43 779 779 HOH HOH . H 4 HOH A 44 780 780 HOH HOH . H 4 HOH A 45 781 781 HOH HOH . H 4 HOH A 46 782 782 HOH HOH . H 4 HOH A 47 783 783 HOH HOH . H 4 HOH A 48 784 784 HOH HOH . H 4 HOH A 49 785 785 HOH HOH . H 4 HOH A 50 786 786 HOH HOH . H 4 HOH A 51 787 787 HOH HOH . H 4 HOH A 52 788 788 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 29.141 _atom_site.Cartn_y -61.641 _atom_site.Cartn_z 29.141 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 34.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 735 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #