data_3ES6 # _model_server_result.job_id 7KF6LWxfRX0rpg6p0XZC6w _model_server_result.datetime_utc '2024-11-05 01:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3es6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 3ES6 # _exptl.entry_id 3ES6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ES6 _cell.length_a 132.298 _cell.length_b 132.298 _cell.length_c 73.752 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ES6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 4 NDG MAN C1 O1 . O2 HO2 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 320 NAG 3 n C NAG 2 C 2 NAG C 321 NAG 3 n C BMA 3 C 3 BMA C 322 BMA 3 n C MAN 4 C 4 MAN C 327 MAN 3 n C NDG 5 C 5 NDG C 328 NAG 4 n D NAG 1 D 1 NAG C 300 NAG 4 n D NAG 2 D 2 NAG C 301 NAG 4 n D BMA 3 D 3 BMA C 302 MAN 4 n D MAN 4 D 4 MAN C 303 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 103 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 205 A CYS 205 1_555 A SG CYS 260 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 37 B CYS 37 1_555 B SG CYS 63 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 B SG CYS 61 B CYS 61 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 A ND2 ASN 239 A ASN 239 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B ND2 ASN 77 B ASN 77 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 C O2 MAN . C MAN 4 1_555 C C1 NDG . C NDG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 346 n n O1 H1 P6G sing 347 n n C2 C3 P6G sing 348 n n C2 H21 P6G sing 349 n n C2 H22 P6G sing 350 n n C3 O4 P6G sing 351 n n C3 H31 P6G sing 352 n n C3 H32 P6G sing 353 n n O4 C5 P6G sing 354 n n C5 C6 P6G sing 355 n n C5 H51 P6G sing 356 n n C5 H52 P6G sing 357 n n C6 O7 P6G sing 358 n n C6 H61 P6G sing 359 n n C6 H62 P6G sing 360 n n O7 C8 P6G sing 361 n n C8 C9 P6G sing 362 n n C8 H81 P6G sing 363 n n C8 H82 P6G sing 364 n n C9 O10 P6G sing 365 n n C9 H91 P6G sing 366 n n C9 H92 P6G sing 367 n n O10 C11 P6G sing 368 n n C11 C12 P6G sing 369 n n C11 H111 P6G sing 370 n n C11 H112 P6G sing 371 n n C12 O13 P6G sing 372 n n C12 H121 P6G sing 373 n n C12 H122 P6G sing 374 n n O13 C14 P6G sing 375 n n C14 C15 P6G sing 376 n n C14 H141 P6G sing 377 n n C14 H142 P6G sing 378 n n C15 O16 P6G sing 379 n n C15 H151 P6G sing 380 n n C15 H152 P6G sing 381 n n O16 C17 P6G sing 382 n n C17 C18 P6G sing 383 n n C17 H171 P6G sing 384 n n C17 H172 P6G sing 385 n n C18 O19 P6G sing 386 n n C18 H181 P6G sing 387 n n C18 H182 P6G sing 388 n n O19 H19 P6G sing 389 n n # _atom_sites.entry_id 3ES6 _atom_sites.fract_transf_matrix[1][1] 0.007559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CO3 A 1 688 688 CO3 CO3 . F 6 P6G A 1 701 701 P6G P6G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . F 6 142.396 21.752 -1.704 1 49.93 ? O1 P6G 701 A 1 HETATM 2 C C2 P6G . . . F 6 141.76 21.016 -0.611 1 49.7 ? C2 P6G 701 A 1 HETATM 3 C C3 P6G . . . F 6 140.341 20.526 -1.237 1 49.28 ? C3 P6G 701 A 1 HETATM 4 O O4 P6G . . . F 6 139.341 20.746 -0.131 1 48.92 ? O4 P6G 701 A 1 HETATM 5 C C5 P6G . . . F 6 138.152 19.969 -0.394 1 47.81 ? C5 P6G 701 A 1 HETATM 6 C C6 P6G . . . F 6 136.951 20.603 0.311 1 47.07 ? C6 P6G 701 A 1 HETATM 7 O O7 P6G . . . F 6 136.86 21.982 -0.045 1 46.44 ? O7 P6G 701 A 1 HETATM 8 C C8 P6G . . . F 6 135.714 22.646 0.573 1 46.2 ? C8 P6G 701 A 1 HETATM 9 C C9 P6G . . . F 6 135.436 24.018 -0.335 1 46.13 ? C9 P6G 701 A 1 HETATM 10 O O10 P6G . . . F 6 136.546 24.22 -1.245 1 46.22 ? O10 P6G 701 A 1 HETATM 11 C C11 P6G . . . F 6 136.295 25.179 -2.28 1 45.32 ? C11 P6G 701 A 1 HETATM 12 C C12 P6G . . . F 6 136.919 24.685 -3.583 1 44.73 ? C12 P6G 701 A 1 HETATM 13 O O13 P6G . . . F 6 136.535 23.328 -3.804 1 44.49 ? O13 P6G 701 A 1 HETATM 14 C C14 P6G . . . F 6 137.414 22.646 -4.709 1 44.24 ? C14 P6G 701 A 1 HETATM 15 C C15 P6G . . . F 6 136.629 21.534 -5.417 1 43.96 ? C15 P6G 701 A 1 HETATM 16 O O16 P6G . . . F 6 137.454 20.367 -5.552 1 43.85 ? O16 P6G 701 A 1 HETATM 17 C C17 P6G . . . F 6 137.956 20.205 -6.881 1 44.15 ? C17 P6G 701 A 1 HETATM 18 C C18 P6G . . . F 6 138.886 18.99 -6.938 1 44.44 ? C18 P6G 701 A 1 HETATM 19 O O19 P6G . . . F 6 140.222 19.415 -7.277 1 44.68 ? O19 P6G 701 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #