data_3ESK
#
_model_server_result.job_id            ZK-_2EbOrEX1nBty2m2QnA 
_model_server_result.datetime_utc      '2025-07-31 07:29:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3esk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3ESK 
#
_exptl.entry_id    3ESK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.56 
_cell.angle_gamma         90 
_cell.entry_id            3ESK 
_cell.length_a            73.459 
_cell.length_b            48.023 
_cell.length_c            37.896 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ESK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NI NI . A NI 1 1_555 D O HOH . A HOH 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc2 C NI NI . A NI 1 1_555 D O HOH . A HOH 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc3 C NI NI . A NI 1 1_555 A NE2 HIS 100 A HIS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc4 C NI NI . A NI 1 1_555 A NZ LYS 104 A LYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3ESK 
_atom_sites.fract_transf_matrix[1][1]    0.013613 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000371 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026398 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NI A 1 1 1 NI NI . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 4 4 HOH HOH . 
D 4 HOH A 3 5 5 HOH HOH . 
D 4 HOH A 4 6 6 HOH HOH . 
D 4 HOH A 5 7 7 HOH HOH . 
D 4 HOH A 6 8 8 HOH HOH . 
D 4 HOH A 7 9 9 HOH HOH . 
D 4 HOH A 8 10 10 HOH HOH . 
D 4 HOH A 9 11 11 HOH HOH . 
D 4 HOH A 10 12 12 HOH HOH . 
D 4 HOH A 11 13 13 HOH HOH . 
D 4 HOH A 12 14 14 HOH HOH . 
D 4 HOH A 13 15 15 HOH HOH . 
D 4 HOH A 14 16 16 HOH HOH . 
D 4 HOH A 15 17 17 HOH HOH . 
D 4 HOH A 16 18 18 HOH HOH . 
D 4 HOH A 17 19 19 HOH HOH . 
D 4 HOH A 18 20 20 HOH HOH . 
D 4 HOH A 19 21 21 HOH HOH . 
D 4 HOH A 20 22 22 HOH HOH . 
D 4 HOH A 21 23 23 HOH HOH . 
D 4 HOH A 22 24 24 HOH HOH . 
D 4 HOH A 23 26 26 HOH HOH . 
D 4 HOH A 24 27 27 HOH HOH . 
D 4 HOH A 25 29 29 HOH HOH . 
D 4 HOH A 26 30 30 HOH HOH . 
D 4 HOH A 27 31 31 HOH HOH . 
D 4 HOH A 28 32 32 HOH HOH . 
D 4 HOH A 29 34 34 HOH HOH . 
D 4 HOH A 30 35 35 HOH HOH . 
D 4 HOH A 31 36 36 HOH HOH . 
D 4 HOH A 32 37 37 HOH HOH . 
D 4 HOH A 33 38 38 HOH HOH . 
D 4 HOH A 34 40 40 HOH HOH . 
D 4 HOH A 35 42 42 HOH HOH . 
D 4 HOH A 36 43 43 HOH HOH . 
D 4 HOH A 37 44 44 HOH HOH . 
D 4 HOH A 38 45 45 HOH HOH . 
D 4 HOH A 39 46 46 HOH HOH . 
D 4 HOH A 40 47 47 HOH HOH . 
D 4 HOH A 41 48 48 HOH HOH . 
D 4 HOH A 42 49 49 HOH HOH . 
D 4 HOH A 43 51 51 HOH HOH . 
D 4 HOH A 44 52 52 HOH HOH . 
D 4 HOH A 45 54 54 HOH HOH . 
D 4 HOH A 46 57 57 HOH HOH . 
D 4 HOH A 47 60 60 HOH HOH . 
D 4 HOH A 48 61 61 HOH HOH . 
D 4 HOH A 49 62 62 HOH HOH . 
D 4 HOH A 50 64 64 HOH HOH . 
D 4 HOH A 51 65 65 HOH HOH . 
D 4 HOH A 52 66 66 HOH HOH . 
D 4 HOH A 53 67 67 HOH HOH . 
D 4 HOH A 54 68 68 HOH HOH . 
D 4 HOH A 55 69 69 HOH HOH . 
D 4 HOH A 56 70 70 HOH HOH . 
D 4 HOH A 57 71 71 HOH HOH . 
D 4 HOH A 58 75 75 HOH HOH . 
D 4 HOH A 59 77 77 HOH HOH . 
D 4 HOH A 60 78 78 HOH HOH . 
D 4 HOH A 61 79 79 HOH HOH . 
D 4 HOH A 62 81 81 HOH HOH . 
D 4 HOH A 63 82 82 HOH HOH . 
D 4 HOH A 64 84 84 HOH HOH . 
D 4 HOH A 65 86 86 HOH HOH . 
D 4 HOH A 66 88 88 HOH HOH . 
D 4 HOH A 67 90 90 HOH HOH . 
D 4 HOH A 68 91 91 HOH HOH . 
D 4 HOH A 69 92 92 HOH HOH . 
D 4 HOH A 70 94 94 HOH HOH . 
D 4 HOH A 71 99 99 HOH HOH . 
D 4 HOH A 72 100 100 HOH HOH . 
D 4 HOH A 73 102 102 HOH HOH . 
D 4 HOH A 74 103 103 HOH HOH . 
D 4 HOH A 75 104 104 HOH HOH . 
D 4 HOH A 76 105 105 HOH HOH . 
D 4 HOH A 77 106 106 HOH HOH . 
D 4 HOH A 78 108 108 HOH HOH . 
D 4 HOH A 79 109 109 HOH HOH . 
D 4 HOH A 80 111 111 HOH HOH . 
D 4 HOH A 81 114 114 HOH HOH . 
D 4 HOH A 82 116 116 HOH HOH . 
D 4 HOH A 83 118 118 HOH HOH . 
D 4 HOH A 84 121 121 HOH HOH . 
D 4 HOH A 85 125 125 HOH HOH . 
D 4 HOH A 86 126 126 HOH HOH . 
D 4 HOH A 87 130 130 HOH HOH . 
D 4 HOH A 88 132 132 HOH HOH . 
D 4 HOH A 89 136 136 HOH HOH . 
E 4 HOH B 1 33 33 HOH HOH . 
E 4 HOH B 2 39 39 HOH HOH . 
E 4 HOH B 3 41 41 HOH HOH . 
E 4 HOH B 4 72 72 HOH HOH . 
E 4 HOH B 5 124 124 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               20.652 
_atom_site.Cartn_y               -3.37 
_atom_site.Cartn_z               25.432 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.45 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#