data_3ETD
#
_model_server_result.job_id            v3Pmwr0agYZpDSrz-wEuwg 
_model_server_result.datetime_utc      '2024-11-04 23:49:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3etd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":550}' 
#
_entry.id    3ETD 
#
_exptl.entry_id    3ETD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.46 
_cell.angle_gamma         90 
_cell.entry_id            3ETD 
_cell.length_a            122.38 
_cell.length_b            101.3 
_cell.length_c            166.59 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ETD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 K N N 
? 2 O N N 
? 2 S N N 
? 2 W N N 
? 2 AA N N 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 128 n n 
N H GLU sing 129 n n 
N H2 GLU sing 130 n n 
CA C GLU sing 131 n n 
CA CB GLU sing 132 n n 
CA HA GLU sing 133 n n 
C O GLU doub 134 n n 
C OXT GLU sing 135 n n 
CB CG GLU sing 136 n n 
CB HB2 GLU sing 137 n n 
CB HB3 GLU sing 138 n n 
CG CD GLU sing 139 n n 
CG HG2 GLU sing 140 n n 
CG HG3 GLU sing 141 n n 
CD OE1 GLU doub 142 n n 
CD OE2 GLU sing 143 n n 
OE2 HE2 GLU sing 144 n n 
OXT HXT GLU sing 145 n n 
#
_atom_sites.entry_id                     3ETD 
_atom_sites.fract_transf_matrix[1][1]    0.008171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001806 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006148 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 550 550 GLU GLU . 
H 3 NDP A 1 551 551 NDP NDP . 
I 4 GTP A 1 553 553 GTP GTP . 
J 5 B1T A 1 552 1 B1T B1T . 
K 2 GLU B 1 550 550 GLU GLU . 
L 3 NDP B 1 551 551 NDP NDP . 
M 4 GTP B 1 553 553 GTP GTP . 
N 5 B1T B 1 552 1 B1T B1T . 
O 2 GLU C 1 550 550 GLU GLU . 
P 3 NDP C 1 551 551 NDP NDP . 
Q 4 GTP C 1 553 553 GTP GTP . 
R 5 B1T C 1 552 1 B1T B1T . 
S 2 GLU D 1 550 550 GLU GLU . 
T 3 NDP D 1 551 551 NDP NDP . 
U 4 GTP D 1 553 553 GTP GTP . 
V 5 B1T D 1 552 1 B1T B1T . 
W 2 GLU E 1 550 550 GLU GLU . 
X 3 NDP E 1 551 551 NDP NDP . 
Y 4 GTP E 1 553 553 GTP GTP . 
Z 5 B1T E 1 552 1 B1T B1T . 
AA 2 GLU F 1 550 550 GLU GLU . 
BA 3 NDP F 1 551 551 NDP NDP . 
CA 4 GTP F 1 553 553 GTP GTP . 
DA 5 B1T F 1 552 1 B1T B1T . 
EA 6 HOH A 1 554 9 HOH TIP . 
EA 6 HOH A 2 555 16 HOH TIP . 
EA 6 HOH A 3 556 23 HOH TIP . 
EA 6 HOH A 4 557 24 HOH TIP . 
EA 6 HOH A 5 558 31 HOH TIP . 
EA 6 HOH A 6 559 46 HOH TIP . 
EA 6 HOH A 7 560 56 HOH TIP . 
EA 6 HOH A 8 561 63 HOH TIP . 
EA 6 HOH A 9 562 66 HOH TIP . 
EA 6 HOH A 10 563 78 HOH TIP . 
EA 6 HOH A 11 564 82 HOH TIP . 
EA 6 HOH A 12 565 85 HOH TIP . 
EA 6 HOH A 13 566 86 HOH TIP . 
FA 6 HOH B 1 554 6 HOH TIP . 
FA 6 HOH B 2 555 7 HOH TIP . 
FA 6 HOH B 3 556 12 HOH TIP . 
FA 6 HOH B 4 557 15 HOH TIP . 
FA 6 HOH B 5 558 21 HOH TIP . 
FA 6 HOH B 6 559 30 HOH TIP . 
FA 6 HOH B 7 560 32 HOH TIP . 
FA 6 HOH B 8 561 37 HOH TIP . 
FA 6 HOH B 9 562 38 HOH TIP . 
FA 6 HOH B 10 563 43 HOH TIP . 
FA 6 HOH B 11 564 45 HOH TIP . 
FA 6 HOH B 12 565 49 HOH TIP . 
FA 6 HOH B 13 566 58 HOH TIP . 
FA 6 HOH B 14 567 68 HOH TIP . 
FA 6 HOH B 15 568 70 HOH TIP . 
FA 6 HOH B 16 569 72 HOH TIP . 
FA 6 HOH B 17 570 74 HOH TIP . 
GA 6 HOH C 1 554 5 HOH TIP . 
GA 6 HOH C 2 555 10 HOH TIP . 
GA 6 HOH C 3 556 11 HOH TIP . 
GA 6 HOH C 4 557 25 HOH TIP . 
GA 6 HOH C 5 558 27 HOH TIP . 
GA 6 HOH C 6 559 28 HOH TIP . 
GA 6 HOH C 7 560 33 HOH TIP . 
GA 6 HOH C 8 561 34 HOH TIP . 
GA 6 HOH C 9 562 36 HOH TIP . 
GA 6 HOH C 10 563 41 HOH TIP . 
GA 6 HOH C 11 564 48 HOH TIP . 
GA 6 HOH C 12 565 52 HOH TIP . 
GA 6 HOH C 13 566 54 HOH TIP . 
GA 6 HOH C 14 567 55 HOH TIP . 
GA 6 HOH C 15 568 57 HOH TIP . 
GA 6 HOH C 16 569 65 HOH TIP . 
GA 6 HOH C 17 570 69 HOH TIP . 
GA 6 HOH C 18 571 73 HOH TIP . 
GA 6 HOH C 19 572 88 HOH TIP . 
HA 6 HOH D 1 554 1 HOH TIP . 
HA 6 HOH D 2 555 8 HOH TIP . 
HA 6 HOH D 3 556 14 HOH TIP . 
HA 6 HOH D 4 557 17 HOH TIP . 
HA 6 HOH D 5 558 18 HOH TIP . 
HA 6 HOH D 6 559 19 HOH TIP . 
HA 6 HOH D 7 560 20 HOH TIP . 
HA 6 HOH D 8 561 26 HOH TIP . 
HA 6 HOH D 9 562 29 HOH TIP . 
HA 6 HOH D 10 563 35 HOH TIP . 
HA 6 HOH D 11 564 47 HOH TIP . 
HA 6 HOH D 12 565 50 HOH TIP . 
HA 6 HOH D 13 566 53 HOH TIP . 
HA 6 HOH D 14 567 61 HOH TIP . 
HA 6 HOH D 15 568 62 HOH TIP . 
HA 6 HOH D 16 569 64 HOH TIP . 
HA 6 HOH D 17 570 67 HOH TIP . 
HA 6 HOH D 18 571 77 HOH TIP . 
HA 6 HOH D 19 572 80 HOH TIP . 
HA 6 HOH D 20 573 83 HOH TIP . 
IA 6 HOH E 1 554 2 HOH TIP . 
IA 6 HOH E 2 555 3 HOH TIP . 
IA 6 HOH E 3 556 13 HOH TIP . 
IA 6 HOH E 4 557 22 HOH TIP . 
IA 6 HOH E 5 558 40 HOH TIP . 
IA 6 HOH E 6 559 42 HOH TIP . 
IA 6 HOH E 7 560 44 HOH TIP . 
IA 6 HOH E 8 561 51 HOH TIP . 
IA 6 HOH E 9 562 71 HOH TIP . 
IA 6 HOH E 10 563 75 HOH TIP . 
IA 6 HOH E 11 564 76 HOH TIP . 
IA 6 HOH E 12 565 79 HOH TIP . 
IA 6 HOH E 13 566 84 HOH TIP . 
JA 6 HOH F 1 554 4 HOH TIP . 
JA 6 HOH F 2 555 39 HOH TIP . 
JA 6 HOH F 3 556 59 HOH TIP . 
JA 6 HOH F 4 557 60 HOH TIP . 
JA 6 HOH F 5 558 81 HOH TIP . 
JA 6 HOH F 6 559 87 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . O 2 61.971 26.56 118.366 1 57.77 ? N GLU 550 C 1 
HETATM 2 C CA GLU . . . O 2 63.228 26.932 119.013 1 56.82 ? CA GLU 550 C 1 
HETATM 3 C C GLU . . . O 2 63.285 26.467 120.461 1 56.08 ? C GLU 550 C 1 
HETATM 4 O O GLU . . . O 2 63.39 25.285 120.736 1 52.88 ? O GLU 550 C 1 
HETATM 5 C CB GLU . . . O 2 63.421 28.451 119.006 1 55.72 ? CB GLU 550 C 1 
HETATM 6 C CG GLU . . . O 2 62.45 29.18 119.923 1 54.88 ? CG GLU 550 C 1 
HETATM 7 C CD GLU . . . O 2 62.92 30.584 120.358 1 56.84 ? CD GLU 550 C 1 
HETATM 8 O OE1 GLU . . . O 2 62.119 31.318 120.977 1 55.54 ? OE1 GLU 550 C 1 
HETATM 9 O OE2 GLU . . . O 2 64.082 30.969 120.096 1 56.69 ? OE2 GLU 550 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#