data_3ETD
#
_model_server_result.job_id            Byc-y2ewF4PxqE63DB8KMg 
_model_server_result.datetime_utc      '2024-11-04 23:43:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3etd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":551}' 
#
_entry.id    3ETD 
#
_exptl.entry_id    3ETD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.46 
_cell.angle_gamma         90 
_cell.entry_id            3ETD 
_cell.length_a            122.38 
_cell.length_b            101.3 
_cell.length_c            166.59 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ETD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 L N N 
? 3 P N N 
? 3 T N N 
? 3 X N N 
? 3 BA N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 313 n n 
PA O2A NDP sing 314 n n 
PA O5B NDP sing 315 n n 
PA O3 NDP sing 316 n n 
O2A HOA2 NDP sing 317 n n 
O5B C5B NDP sing 318 n n 
C5B C4B NDP sing 319 n n 
C5B H51A NDP sing 320 n n 
C5B H52A NDP sing 321 n n 
C4B O4B NDP sing 322 n n 
C4B C3B NDP sing 323 n n 
C4B H4B NDP sing 324 n n 
O4B C1B NDP sing 325 n n 
C3B O3B NDP sing 326 n n 
C3B C2B NDP sing 327 n n 
C3B H3B NDP sing 328 n n 
O3B HO3A NDP sing 329 n n 
C2B O2B NDP sing 330 n n 
C2B C1B NDP sing 331 n n 
C2B H2B NDP sing 332 n n 
O2B P2B NDP sing 333 n n 
C1B N9A NDP sing 334 n n 
C1B H1B NDP sing 335 n n 
N9A C8A NDP sing 336 n y 
N9A C4A NDP sing 337 n y 
C8A N7A NDP doub 338 n y 
C8A H8A NDP sing 339 n n 
N7A C5A NDP sing 340 n y 
C5A C6A NDP sing 341 n y 
C5A C4A NDP doub 342 n y 
C6A N6A NDP sing 343 n n 
C6A N1A NDP doub 344 n y 
N6A H61A NDP sing 345 n n 
N6A H62A NDP sing 346 n n 
N1A C2A NDP sing 347 n y 
C2A N3A NDP doub 348 n y 
C2A H2A NDP sing 349 n n 
N3A C4A NDP sing 350 n y 
O3 PN NDP sing 351 n n 
PN O1N NDP doub 352 n n 
PN O2N NDP sing 353 n n 
PN O5D NDP sing 354 n n 
O2N H21N NDP sing 355 n n 
O5D C5D NDP sing 356 n n 
C5D C4D NDP sing 357 n n 
C5D H51N NDP sing 358 n n 
C5D H52N NDP sing 359 n n 
C4D O4D NDP sing 360 n n 
C4D C3D NDP sing 361 n n 
C4D H4D NDP sing 362 n n 
O4D C1D NDP sing 363 n n 
C3D O3D NDP sing 364 n n 
C3D C2D NDP sing 365 n n 
C3D H3D NDP sing 366 n n 
O3D HO3N NDP sing 367 n n 
C2D O2D NDP sing 368 n n 
C2D C1D NDP sing 369 n n 
C2D H2D NDP sing 370 n n 
O2D HO2N NDP sing 371 n n 
C1D N1N NDP sing 372 n n 
C1D H1D NDP sing 373 n n 
N1N C2N NDP sing 374 n n 
N1N C6N NDP sing 375 n n 
C2N C3N NDP doub 376 n n 
C2N H2N NDP sing 377 n n 
C3N C7N NDP sing 378 n n 
C3N C4N NDP sing 379 n n 
C7N O7N NDP doub 380 n n 
C7N N7N NDP sing 381 n n 
N7N H71N NDP sing 382 n n 
N7N H72N NDP sing 383 n n 
C4N C5N NDP sing 384 n n 
C4N H41N NDP sing 385 n n 
C4N H42N NDP sing 386 n n 
C5N C6N NDP doub 387 n n 
C5N H5N NDP sing 388 n n 
C6N H6N NDP sing 389 n n 
P2B O1X NDP doub 390 n n 
P2B O2X NDP sing 391 n n 
P2B O3X NDP sing 392 n n 
O2X HOP2 NDP sing 393 n n 
O3X HOP3 NDP sing 394 n n 
#
_atom_sites.entry_id                     3ETD 
_atom_sites.fract_transf_matrix[1][1]    0.008171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001806 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006148 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 550 550 GLU GLU . 
H 3 NDP A 1 551 551 NDP NDP . 
I 4 GTP A 1 553 553 GTP GTP . 
J 5 B1T A 1 552 1 B1T B1T . 
K 2 GLU B 1 550 550 GLU GLU . 
L 3 NDP B 1 551 551 NDP NDP . 
M 4 GTP B 1 553 553 GTP GTP . 
N 5 B1T B 1 552 1 B1T B1T . 
O 2 GLU C 1 550 550 GLU GLU . 
P 3 NDP C 1 551 551 NDP NDP . 
Q 4 GTP C 1 553 553 GTP GTP . 
R 5 B1T C 1 552 1 B1T B1T . 
S 2 GLU D 1 550 550 GLU GLU . 
T 3 NDP D 1 551 551 NDP NDP . 
U 4 GTP D 1 553 553 GTP GTP . 
V 5 B1T D 1 552 1 B1T B1T . 
W 2 GLU E 1 550 550 GLU GLU . 
X 3 NDP E 1 551 551 NDP NDP . 
Y 4 GTP E 1 553 553 GTP GTP . 
Z 5 B1T E 1 552 1 B1T B1T . 
AA 2 GLU F 1 550 550 GLU GLU . 
BA 3 NDP F 1 551 551 NDP NDP . 
CA 4 GTP F 1 553 553 GTP GTP . 
DA 5 B1T F 1 552 1 B1T B1T . 
EA 6 HOH A 1 554 9 HOH TIP . 
EA 6 HOH A 2 555 16 HOH TIP . 
EA 6 HOH A 3 556 23 HOH TIP . 
EA 6 HOH A 4 557 24 HOH TIP . 
EA 6 HOH A 5 558 31 HOH TIP . 
EA 6 HOH A 6 559 46 HOH TIP . 
EA 6 HOH A 7 560 56 HOH TIP . 
EA 6 HOH A 8 561 63 HOH TIP . 
EA 6 HOH A 9 562 66 HOH TIP . 
EA 6 HOH A 10 563 78 HOH TIP . 
EA 6 HOH A 11 564 82 HOH TIP . 
EA 6 HOH A 12 565 85 HOH TIP . 
EA 6 HOH A 13 566 86 HOH TIP . 
FA 6 HOH B 1 554 6 HOH TIP . 
FA 6 HOH B 2 555 7 HOH TIP . 
FA 6 HOH B 3 556 12 HOH TIP . 
FA 6 HOH B 4 557 15 HOH TIP . 
FA 6 HOH B 5 558 21 HOH TIP . 
FA 6 HOH B 6 559 30 HOH TIP . 
FA 6 HOH B 7 560 32 HOH TIP . 
FA 6 HOH B 8 561 37 HOH TIP . 
FA 6 HOH B 9 562 38 HOH TIP . 
FA 6 HOH B 10 563 43 HOH TIP . 
FA 6 HOH B 11 564 45 HOH TIP . 
FA 6 HOH B 12 565 49 HOH TIP . 
FA 6 HOH B 13 566 58 HOH TIP . 
FA 6 HOH B 14 567 68 HOH TIP . 
FA 6 HOH B 15 568 70 HOH TIP . 
FA 6 HOH B 16 569 72 HOH TIP . 
FA 6 HOH B 17 570 74 HOH TIP . 
GA 6 HOH C 1 554 5 HOH TIP . 
GA 6 HOH C 2 555 10 HOH TIP . 
GA 6 HOH C 3 556 11 HOH TIP . 
GA 6 HOH C 4 557 25 HOH TIP . 
GA 6 HOH C 5 558 27 HOH TIP . 
GA 6 HOH C 6 559 28 HOH TIP . 
GA 6 HOH C 7 560 33 HOH TIP . 
GA 6 HOH C 8 561 34 HOH TIP . 
GA 6 HOH C 9 562 36 HOH TIP . 
GA 6 HOH C 10 563 41 HOH TIP . 
GA 6 HOH C 11 564 48 HOH TIP . 
GA 6 HOH C 12 565 52 HOH TIP . 
GA 6 HOH C 13 566 54 HOH TIP . 
GA 6 HOH C 14 567 55 HOH TIP . 
GA 6 HOH C 15 568 57 HOH TIP . 
GA 6 HOH C 16 569 65 HOH TIP . 
GA 6 HOH C 17 570 69 HOH TIP . 
GA 6 HOH C 18 571 73 HOH TIP . 
GA 6 HOH C 19 572 88 HOH TIP . 
HA 6 HOH D 1 554 1 HOH TIP . 
HA 6 HOH D 2 555 8 HOH TIP . 
HA 6 HOH D 3 556 14 HOH TIP . 
HA 6 HOH D 4 557 17 HOH TIP . 
HA 6 HOH D 5 558 18 HOH TIP . 
HA 6 HOH D 6 559 19 HOH TIP . 
HA 6 HOH D 7 560 20 HOH TIP . 
HA 6 HOH D 8 561 26 HOH TIP . 
HA 6 HOH D 9 562 29 HOH TIP . 
HA 6 HOH D 10 563 35 HOH TIP . 
HA 6 HOH D 11 564 47 HOH TIP . 
HA 6 HOH D 12 565 50 HOH TIP . 
HA 6 HOH D 13 566 53 HOH TIP . 
HA 6 HOH D 14 567 61 HOH TIP . 
HA 6 HOH D 15 568 62 HOH TIP . 
HA 6 HOH D 16 569 64 HOH TIP . 
HA 6 HOH D 17 570 67 HOH TIP . 
HA 6 HOH D 18 571 77 HOH TIP . 
HA 6 HOH D 19 572 80 HOH TIP . 
HA 6 HOH D 20 573 83 HOH TIP . 
IA 6 HOH E 1 554 2 HOH TIP . 
IA 6 HOH E 2 555 3 HOH TIP . 
IA 6 HOH E 3 556 13 HOH TIP . 
IA 6 HOH E 4 557 22 HOH TIP . 
IA 6 HOH E 5 558 40 HOH TIP . 
IA 6 HOH E 6 559 42 HOH TIP . 
IA 6 HOH E 7 560 44 HOH TIP . 
IA 6 HOH E 8 561 51 HOH TIP . 
IA 6 HOH E 9 562 71 HOH TIP . 
IA 6 HOH E 10 563 75 HOH TIP . 
IA 6 HOH E 11 564 76 HOH TIP . 
IA 6 HOH E 12 565 79 HOH TIP . 
IA 6 HOH E 13 566 84 HOH TIP . 
JA 6 HOH F 1 554 4 HOH TIP . 
JA 6 HOH F 2 555 39 HOH TIP . 
JA 6 HOH F 3 556 59 HOH TIP . 
JA 6 HOH F 4 557 60 HOH TIP . 
JA 6 HOH F 5 558 81 HOH TIP . 
JA 6 HOH F 6 559 87 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . L 3 29.888 55.331 88.108 1 65.15 ? PA NDP 551 B 1 
HETATM 2 O O1A NDP . . . L 3 29.153 54.172 87.627 1 66.71 ? O1A NDP 551 B 1 
HETATM 3 O O2A NDP . . . L 3 31.471 55.275 87.807 1 64.6 ? O2A NDP 551 B 1 
HETATM 4 O O5B NDP . . . L 3 29.588 56.056 86.648 1 67.41 ? O5B NDP 551 B 1 
HETATM 5 C C5B NDP . . . L 3 29.97 55.331 85.483 1 69.95 ? C5B NDP 551 B 1 
HETATM 6 C C4B NDP . . . L 3 29.625 56.202 84.244 1 70.52 ? C4B NDP 551 B 1 
HETATM 7 O O4B NDP . . . L 3 30.345 57.483 84.262 1 69.72 ? O4B NDP 551 B 1 
HETATM 8 C C3B NDP . . . L 3 30.061 55.453 82.993 1 70.01 ? C3B NDP 551 B 1 
HETATM 9 O O3B NDP . . . L 3 28.918 55.302 82.135 1 68.75 ? O3B NDP 551 B 1 
HETATM 10 C C2B NDP . . . L 3 31.138 56.405 82.418 1 69.69 ? C2B NDP 551 B 1 
HETATM 11 O O2B NDP . . . L 3 31.463 56.238 81.052 1 71.55 ? O2B NDP 551 B 1 
HETATM 12 C C1B NDP . . . L 3 30.554 57.779 82.827 1 69.65 ? C1B NDP 551 B 1 
HETATM 13 N N9A NDP . . . L 3 31.52 58.922 82.574 1 69.69 ? N9A NDP 551 B 1 
HETATM 14 C C8A NDP . . . L 3 32.635 59.242 83.298 1 70.41 ? C8A NDP 551 B 1 
HETATM 15 N N7A NDP . . . L 3 33.235 60.289 82.805 1 69.33 ? N7A NDP 551 B 1 
HETATM 16 C C5A NDP . . . L 3 32.565 60.728 81.729 1 69.64 ? C5A NDP 551 B 1 
HETATM 17 C C6A NDP . . . L 3 32.742 61.808 80.81 1 70.28 ? C6A NDP 551 B 1 
HETATM 18 N N6A NDP . . . L 3 33.805 62.682 80.942 1 71.05 ? N6A NDP 551 B 1 
HETATM 19 N N1A NDP . . . L 3 31.848 61.975 79.812 1 70.08 ? N1A NDP 551 B 1 
HETATM 20 C C2A NDP . . . L 3 30.801 61.13 79.671 1 70.11 ? C2A NDP 551 B 1 
HETATM 21 N N3A NDP . . . L 3 30.596 60.098 80.509 1 70.22 ? N3A NDP 551 B 1 
HETATM 22 C C4A NDP . . . L 3 31.445 59.862 81.548 1 69.76 ? C4A NDP 551 B 1 
HETATM 23 O O3 NDP . . . L 3 29.277 56.769 88.358 1 72.79 ? O3 NDP 551 B 1 
HETATM 24 P PN NDP . . . L 3 29.385 56.989 89.849 1 74.28 ? PN NDP 551 B 1 
HETATM 25 O O1N NDP . . . L 3 30.587 57.617 90.441 1 78.72 ? O1N NDP 551 B 1 
HETATM 26 O O2N NDP . . . L 3 27.991 56.977 90.688 1 74.41 ? O2N NDP 551 B 1 
HETATM 27 O O5D NDP . . . L 3 28.849 58.462 89.404 1 72.4 ? O5D NDP 551 B 1 
HETATM 28 C C5D NDP . . . L 3 29.076 59.376 90.487 1 77.02 ? C5D NDP 551 B 1 
HETATM 29 C C4D NDP . . . L 3 28.509 60.73 90.238 1 77.53 ? C4D NDP 551 B 1 
HETATM 30 O O4D NDP . . . L 3 27.104 60.507 90.691 1 80.23 ? O4D NDP 551 B 1 
HETATM 31 C C3D NDP . . . L 3 29.091 61.706 91.256 1 79.86 ? C3D NDP 551 B 1 
HETATM 32 O O3D NDP . . . L 3 29.553 62.876 90.588 1 78.8 ? O3D NDP 551 B 1 
HETATM 33 C C2D NDP . . . L 3 28.056 62.033 92.325 1 81.98 ? C2D NDP 551 B 1 
HETATM 34 O O2D NDP . . . L 3 27.769 63.419 92.472 1 85.42 ? O2D NDP 551 B 1 
HETATM 35 C C1D NDP . . . L 3 26.828 61.26 91.946 1 80.53 ? C1D NDP 551 B 1 
HETATM 36 N N1N NDP . . . L 3 26.485 60.478 93.184 1 79.9 ? N1N NDP 551 B 1 
HETATM 37 C C2N NDP . . . L 3 26.905 59.161 93.418 1 79.77 ? C2N NDP 551 B 1 
HETATM 38 C C3N NDP . . . L 3 26.546 58.502 94.587 1 79.71 ? C3N NDP 551 B 1 
HETATM 39 C C7N NDP . . . L 3 26.986 57.163 94.817 1 78.68 ? C7N NDP 551 B 1 
HETATM 40 O O7N NDP . . . L 3 27.669 56.617 93.998 1 77.99 ? O7N NDP 551 B 1 
HETATM 41 N N7N NDP . . . L 3 26.649 56.496 95.94 1 79.87 ? N7N NDP 551 B 1 
HETATM 42 C C4N NDP . . . L 3 25.687 59.173 95.636 1 80.91 ? C4N NDP 551 B 1 
HETATM 43 C C5N NDP . . . L 3 25.372 60.606 95.303 1 81.08 ? C5N NDP 551 B 1 
HETATM 44 C C6N NDP . . . L 3 25.75 61.173 94.174 1 80.05 ? C6N NDP 551 B 1 
HETATM 45 P P2B NDP . . . L 3 32.858 55.392 81.011 1 71.62 ? P2B NDP 551 B 1 
HETATM 46 O O1X NDP . . . L 3 32.649 54.064 81.649 1 71.19 ? O1X NDP 551 B 1 
HETATM 47 O O2X NDP . . . L 3 33.314 55.179 79.479 1 72.8 ? O2X NDP 551 B 1 
HETATM 48 O O3X NDP . . . L 3 34.011 56.166 81.829 1 70.43 ? O3X NDP 551 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           48 
#