data_3ETD
#
_model_server_result.job_id            9BLD8Z8zf8UND0zp6RxZgQ 
_model_server_result.datetime_utc      '2024-11-04 23:48:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3etd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":551}' 
#
_entry.id    3ETD 
#
_exptl.entry_id    3ETD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.46 
_cell.angle_gamma         90 
_cell.entry_id            3ETD 
_cell.length_a            122.38 
_cell.length_b            101.3 
_cell.length_c            166.59 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ETD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 L N N 
? 3 P N N 
? 3 T N N 
? 3 X N N 
? 3 BA N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 313 n n 
PA O2A NDP sing 314 n n 
PA O5B NDP sing 315 n n 
PA O3 NDP sing 316 n n 
O2A HOA2 NDP sing 317 n n 
O5B C5B NDP sing 318 n n 
C5B C4B NDP sing 319 n n 
C5B H51A NDP sing 320 n n 
C5B H52A NDP sing 321 n n 
C4B O4B NDP sing 322 n n 
C4B C3B NDP sing 323 n n 
C4B H4B NDP sing 324 n n 
O4B C1B NDP sing 325 n n 
C3B O3B NDP sing 326 n n 
C3B C2B NDP sing 327 n n 
C3B H3B NDP sing 328 n n 
O3B HO3A NDP sing 329 n n 
C2B O2B NDP sing 330 n n 
C2B C1B NDP sing 331 n n 
C2B H2B NDP sing 332 n n 
O2B P2B NDP sing 333 n n 
C1B N9A NDP sing 334 n n 
C1B H1B NDP sing 335 n n 
N9A C8A NDP sing 336 n y 
N9A C4A NDP sing 337 n y 
C8A N7A NDP doub 338 n y 
C8A H8A NDP sing 339 n n 
N7A C5A NDP sing 340 n y 
C5A C6A NDP sing 341 n y 
C5A C4A NDP doub 342 n y 
C6A N6A NDP sing 343 n n 
C6A N1A NDP doub 344 n y 
N6A H61A NDP sing 345 n n 
N6A H62A NDP sing 346 n n 
N1A C2A NDP sing 347 n y 
C2A N3A NDP doub 348 n y 
C2A H2A NDP sing 349 n n 
N3A C4A NDP sing 350 n y 
O3 PN NDP sing 351 n n 
PN O1N NDP doub 352 n n 
PN O2N NDP sing 353 n n 
PN O5D NDP sing 354 n n 
O2N H21N NDP sing 355 n n 
O5D C5D NDP sing 356 n n 
C5D C4D NDP sing 357 n n 
C5D H51N NDP sing 358 n n 
C5D H52N NDP sing 359 n n 
C4D O4D NDP sing 360 n n 
C4D C3D NDP sing 361 n n 
C4D H4D NDP sing 362 n n 
O4D C1D NDP sing 363 n n 
C3D O3D NDP sing 364 n n 
C3D C2D NDP sing 365 n n 
C3D H3D NDP sing 366 n n 
O3D HO3N NDP sing 367 n n 
C2D O2D NDP sing 368 n n 
C2D C1D NDP sing 369 n n 
C2D H2D NDP sing 370 n n 
O2D HO2N NDP sing 371 n n 
C1D N1N NDP sing 372 n n 
C1D H1D NDP sing 373 n n 
N1N C2N NDP sing 374 n n 
N1N C6N NDP sing 375 n n 
C2N C3N NDP doub 376 n n 
C2N H2N NDP sing 377 n n 
C3N C7N NDP sing 378 n n 
C3N C4N NDP sing 379 n n 
C7N O7N NDP doub 380 n n 
C7N N7N NDP sing 381 n n 
N7N H71N NDP sing 382 n n 
N7N H72N NDP sing 383 n n 
C4N C5N NDP sing 384 n n 
C4N H41N NDP sing 385 n n 
C4N H42N NDP sing 386 n n 
C5N C6N NDP doub 387 n n 
C5N H5N NDP sing 388 n n 
C6N H6N NDP sing 389 n n 
P2B O1X NDP doub 390 n n 
P2B O2X NDP sing 391 n n 
P2B O3X NDP sing 392 n n 
O2X HOP2 NDP sing 393 n n 
O3X HOP3 NDP sing 394 n n 
#
_atom_sites.entry_id                     3ETD 
_atom_sites.fract_transf_matrix[1][1]    0.008171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001806 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006148 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 550 550 GLU GLU . 
H 3 NDP A 1 551 551 NDP NDP . 
I 4 GTP A 1 553 553 GTP GTP . 
J 5 B1T A 1 552 1 B1T B1T . 
K 2 GLU B 1 550 550 GLU GLU . 
L 3 NDP B 1 551 551 NDP NDP . 
M 4 GTP B 1 553 553 GTP GTP . 
N 5 B1T B 1 552 1 B1T B1T . 
O 2 GLU C 1 550 550 GLU GLU . 
P 3 NDP C 1 551 551 NDP NDP . 
Q 4 GTP C 1 553 553 GTP GTP . 
R 5 B1T C 1 552 1 B1T B1T . 
S 2 GLU D 1 550 550 GLU GLU . 
T 3 NDP D 1 551 551 NDP NDP . 
U 4 GTP D 1 553 553 GTP GTP . 
V 5 B1T D 1 552 1 B1T B1T . 
W 2 GLU E 1 550 550 GLU GLU . 
X 3 NDP E 1 551 551 NDP NDP . 
Y 4 GTP E 1 553 553 GTP GTP . 
Z 5 B1T E 1 552 1 B1T B1T . 
AA 2 GLU F 1 550 550 GLU GLU . 
BA 3 NDP F 1 551 551 NDP NDP . 
CA 4 GTP F 1 553 553 GTP GTP . 
DA 5 B1T F 1 552 1 B1T B1T . 
EA 6 HOH A 1 554 9 HOH TIP . 
EA 6 HOH A 2 555 16 HOH TIP . 
EA 6 HOH A 3 556 23 HOH TIP . 
EA 6 HOH A 4 557 24 HOH TIP . 
EA 6 HOH A 5 558 31 HOH TIP . 
EA 6 HOH A 6 559 46 HOH TIP . 
EA 6 HOH A 7 560 56 HOH TIP . 
EA 6 HOH A 8 561 63 HOH TIP . 
EA 6 HOH A 9 562 66 HOH TIP . 
EA 6 HOH A 10 563 78 HOH TIP . 
EA 6 HOH A 11 564 82 HOH TIP . 
EA 6 HOH A 12 565 85 HOH TIP . 
EA 6 HOH A 13 566 86 HOH TIP . 
FA 6 HOH B 1 554 6 HOH TIP . 
FA 6 HOH B 2 555 7 HOH TIP . 
FA 6 HOH B 3 556 12 HOH TIP . 
FA 6 HOH B 4 557 15 HOH TIP . 
FA 6 HOH B 5 558 21 HOH TIP . 
FA 6 HOH B 6 559 30 HOH TIP . 
FA 6 HOH B 7 560 32 HOH TIP . 
FA 6 HOH B 8 561 37 HOH TIP . 
FA 6 HOH B 9 562 38 HOH TIP . 
FA 6 HOH B 10 563 43 HOH TIP . 
FA 6 HOH B 11 564 45 HOH TIP . 
FA 6 HOH B 12 565 49 HOH TIP . 
FA 6 HOH B 13 566 58 HOH TIP . 
FA 6 HOH B 14 567 68 HOH TIP . 
FA 6 HOH B 15 568 70 HOH TIP . 
FA 6 HOH B 16 569 72 HOH TIP . 
FA 6 HOH B 17 570 74 HOH TIP . 
GA 6 HOH C 1 554 5 HOH TIP . 
GA 6 HOH C 2 555 10 HOH TIP . 
GA 6 HOH C 3 556 11 HOH TIP . 
GA 6 HOH C 4 557 25 HOH TIP . 
GA 6 HOH C 5 558 27 HOH TIP . 
GA 6 HOH C 6 559 28 HOH TIP . 
GA 6 HOH C 7 560 33 HOH TIP . 
GA 6 HOH C 8 561 34 HOH TIP . 
GA 6 HOH C 9 562 36 HOH TIP . 
GA 6 HOH C 10 563 41 HOH TIP . 
GA 6 HOH C 11 564 48 HOH TIP . 
GA 6 HOH C 12 565 52 HOH TIP . 
GA 6 HOH C 13 566 54 HOH TIP . 
GA 6 HOH C 14 567 55 HOH TIP . 
GA 6 HOH C 15 568 57 HOH TIP . 
GA 6 HOH C 16 569 65 HOH TIP . 
GA 6 HOH C 17 570 69 HOH TIP . 
GA 6 HOH C 18 571 73 HOH TIP . 
GA 6 HOH C 19 572 88 HOH TIP . 
HA 6 HOH D 1 554 1 HOH TIP . 
HA 6 HOH D 2 555 8 HOH TIP . 
HA 6 HOH D 3 556 14 HOH TIP . 
HA 6 HOH D 4 557 17 HOH TIP . 
HA 6 HOH D 5 558 18 HOH TIP . 
HA 6 HOH D 6 559 19 HOH TIP . 
HA 6 HOH D 7 560 20 HOH TIP . 
HA 6 HOH D 8 561 26 HOH TIP . 
HA 6 HOH D 9 562 29 HOH TIP . 
HA 6 HOH D 10 563 35 HOH TIP . 
HA 6 HOH D 11 564 47 HOH TIP . 
HA 6 HOH D 12 565 50 HOH TIP . 
HA 6 HOH D 13 566 53 HOH TIP . 
HA 6 HOH D 14 567 61 HOH TIP . 
HA 6 HOH D 15 568 62 HOH TIP . 
HA 6 HOH D 16 569 64 HOH TIP . 
HA 6 HOH D 17 570 67 HOH TIP . 
HA 6 HOH D 18 571 77 HOH TIP . 
HA 6 HOH D 19 572 80 HOH TIP . 
HA 6 HOH D 20 573 83 HOH TIP . 
IA 6 HOH E 1 554 2 HOH TIP . 
IA 6 HOH E 2 555 3 HOH TIP . 
IA 6 HOH E 3 556 13 HOH TIP . 
IA 6 HOH E 4 557 22 HOH TIP . 
IA 6 HOH E 5 558 40 HOH TIP . 
IA 6 HOH E 6 559 42 HOH TIP . 
IA 6 HOH E 7 560 44 HOH TIP . 
IA 6 HOH E 8 561 51 HOH TIP . 
IA 6 HOH E 9 562 71 HOH TIP . 
IA 6 HOH E 10 563 75 HOH TIP . 
IA 6 HOH E 11 564 76 HOH TIP . 
IA 6 HOH E 12 565 79 HOH TIP . 
IA 6 HOH E 13 566 84 HOH TIP . 
JA 6 HOH F 1 554 4 HOH TIP . 
JA 6 HOH F 2 555 39 HOH TIP . 
JA 6 HOH F 3 556 59 HOH TIP . 
JA 6 HOH F 4 557 60 HOH TIP . 
JA 6 HOH F 5 558 81 HOH TIP . 
JA 6 HOH F 6 559 87 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . X 3 66.544 79.828 115.014 1 77.69 ? PA NDP 551 E 1 
HETATM 2 O O1A NDP . . . X 3 67.156 80.38 116.232 1 79.07 ? O1A NDP 551 E 1 
HETATM 3 O O2A NDP . . . X 3 65.206 80.592 114.54 1 76.72 ? O2A NDP 551 E 1 
HETATM 4 O O5B NDP . . . X 3 67.441 80.925 114.126 1 79.25 ? O5B NDP 551 E 1 
HETATM 5 C C5B NDP . . . X 3 67.205 82.296 114.472 1 80.47 ? C5B NDP 551 E 1 
HETATM 6 C C4B NDP . . . X 3 68.03 83.233 113.563 1 79.72 ? C4B NDP 551 E 1 
HETATM 7 O O4B NDP . . . X 3 67.662 82.994 112.158 1 78.53 ? O4B NDP 551 E 1 
HETATM 8 C C3B NDP . . . X 3 67.654 84.67 113.917 1 79.71 ? C3B NDP 551 E 1 
HETATM 9 O O3B NDP . . . X 3 68.817 85.431 114.287 1 78.83 ? O3B NDP 551 E 1 
HETATM 10 C C2B NDP . . . X 3 66.973 85.131 112.593 1 79.15 ? C2B NDP 551 E 1 
HETATM 11 O O2B NDP . . . X 3 66.913 86.529 112.395 1 82.7 ? O2B NDP 551 E 1 
HETATM 12 C C1B NDP . . . X 3 67.772 84.314 111.544 1 76.58 ? C1B NDP 551 E 1 
HETATM 13 N N9A NDP . . . X 3 67.172 84.372 110.15 1 72.99 ? N9A NDP 551 E 1 
HETATM 14 C C8A NDP . . . X 3 65.925 83.967 109.721 1 71.83 ? C8A NDP 551 E 1 
HETATM 15 N N7A NDP . . . X 3 65.775 84.182 108.434 1 70.14 ? N7A NDP 551 E 1 
HETATM 16 C C5A NDP . . . X 3 66.905 84.723 107.942 1 69.39 ? C5A NDP 551 E 1 
HETATM 17 C C6A NDP . . . X 3 67.354 85.162 106.653 1 69.42 ? C6A NDP 551 E 1 
HETATM 18 N N6A NDP . . . X 3 66.537 85.079 105.53 1 69.62 ? N6A NDP 551 E 1 
HETATM 19 N N1A NDP . . . X 3 68.598 85.668 106.534 1 67.57 ? N1A NDP 551 E 1 
HETATM 20 C C2A NDP . . . X 3 69.42 85.772 107.583 1 68.14 ? C2A NDP 551 E 1 
HETATM 21 N N3A NDP . . . X 3 69.058 85.381 108.801 1 70.22 ? N3A NDP 551 E 1 
HETATM 22 C C4A NDP . . . X 3 67.819 84.855 109.031 1 71.22 ? C4A NDP 551 E 1 
HETATM 23 O O3 NDP . . . X 3 67.326 78.947 113.918 1 81.37 ? O3 NDP 551 E 1 
HETATM 24 P PN NDP . . . X 3 66.729 77.513 114.041 1 80.76 ? PN NDP 551 E 1 
HETATM 25 O O1N NDP . . . X 3 65.608 77.056 113.205 1 83.95 ? O1N NDP 551 E 1 
HETATM 26 O O2N NDP . . . X 3 67.68 76.435 114.789 1 82.15 ? O2N NDP 551 E 1 
HETATM 27 O O5D NDP . . . X 3 67.69 77.187 112.724 1 81.58 ? O5D NDP 551 E 1 
HETATM 28 C C5D NDP . . . X 3 67.281 75.907 112.096 1 85.1 ? C5D NDP 551 E 1 
HETATM 29 C C4D NDP . . . X 3 68.138 75.447 110.904 1 84.72 ? C4D NDP 551 E 1 
HETATM 30 O O4D NDP . . . X 3 69.32 74.786 111.505 1 85.44 ? O4D NDP 551 E 1 
HETATM 31 C C3D NDP . . . X 3 67.431 74.322 110.133 1 85.7 ? C3D NDP 551 E 1 
HETATM 32 O O3D NDP . . . X 3 67.419 74.656 108.748 1 86.31 ? O3D NDP 551 E 1 
HETATM 33 C C2D NDP . . . X 3 68.119 72.994 110.36 1 86.02 ? C2D NDP 551 E 1 
HETATM 34 O O2D NDP . . . X 3 68.569 72.387 109.133 1 87.6 ? O2D NDP 551 E 1 
HETATM 35 C C1D NDP . . . X 3 69.259 73.301 111.296 1 85.67 ? C1D NDP 551 E 1 
HETATM 36 N N1N NDP . . . X 3 69.056 72.477 112.539 1 85.67 ? N1N NDP 551 E 1 
HETATM 37 C C2N NDP . . . X 3 68.269 72.907 113.645 1 84.66 ? C2N NDP 551 E 1 
HETATM 38 C C3N NDP . . . X 3 67.956 72.02 114.675 1 84.04 ? C3N NDP 551 E 1 
HETATM 39 C C7N NDP . . . X 3 67.173 72.429 115.802 1 83.36 ? C7N NDP 551 E 1 
HETATM 40 O O7N NDP . . . X 3 66.764 73.566 115.887 1 83.7 ? O7N NDP 551 E 1 
HETATM 41 N N7N NDP . . . X 3 66.885 71.543 116.79 1 84.19 ? N7N NDP 551 E 1 
HETATM 42 C C4N NDP . . . X 3 68.437 70.585 114.639 1 84.41 ? C4N NDP 551 E 1 
HETATM 43 C C5N NDP . . . X 3 69.414 70.318 113.525 1 84.7 ? C5N NDP 551 E 1 
HETATM 44 C C6N NDP . . . X 3 69.671 71.208 112.577 1 84.66 ? C6N NDP 551 E 1 
HETATM 45 P P2B NDP . . . X 3 65.362 86.908 112.699 1 85.18 ? P2B NDP 551 E 1 
HETATM 46 O O1X NDP . . . X 3 65.021 86.542 114.1 1 83.79 ? O1X NDP 551 E 1 
HETATM 47 O O2X NDP . . . X 3 65.151 88.502 112.481 1 87.38 ? O2X NDP 551 E 1 
HETATM 48 O O3X NDP . . . X 3 64.376 86.068 111.707 1 83.67 ? O3X NDP 551 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#