data_3ETD
#
_model_server_result.job_id            TCgqRUJEB3a8vDztUUi_yA 
_model_server_result.datetime_utc      '2024-11-24 18:56:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3etd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":553}' 
#
_entry.id    3ETD 
#
_exptl.entry_id    3ETD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.46 
_cell.angle_gamma         90 
_cell.entry_id            3ETD 
_cell.length_a            122.38 
_cell.length_b            101.3 
_cell.length_c            166.59 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ETD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 M N N 
? 4 Q N N 
? 4 U N N 
? 4 Y N N 
? 4 CA N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 155 n n 
PG O2G GTP sing 156 n n 
PG O3G GTP sing 157 n n 
PG O3B GTP sing 158 n n 
O2G HOG2 GTP sing 159 n n 
O3G HOG3 GTP sing 160 n n 
O3B PB GTP sing 161 n n 
PB O1B GTP doub 162 n n 
PB O2B GTP sing 163 n n 
PB O3A GTP sing 164 n n 
O2B HOB2 GTP sing 165 n n 
O3A PA GTP sing 166 n n 
PA O1A GTP doub 167 n n 
PA O2A GTP sing 168 n n 
PA O5' GTP sing 169 n n 
O2A HOA2 GTP sing 170 n n 
O5' C5' GTP sing 171 n n 
C5' C4' GTP sing 172 n n 
C5' H5' GTP sing 173 n n 
C5' "H5''" GTP sing 174 n n 
C4' O4' GTP sing 175 n n 
C4' C3' GTP sing 176 n n 
C4' H4' GTP sing 177 n n 
O4' C1' GTP sing 178 n n 
C3' O3' GTP sing 179 n n 
C3' C2' GTP sing 180 n n 
C3' H3' GTP sing 181 n n 
O3' HO3' GTP sing 182 n n 
C2' O2' GTP sing 183 n n 
C2' C1' GTP sing 184 n n 
C2' H2' GTP sing 185 n n 
O2' HO2' GTP sing 186 n n 
C1' N9 GTP sing 187 n n 
C1' H1' GTP sing 188 n n 
N9 C8 GTP sing 189 n y 
N9 C4 GTP sing 190 n y 
C8 N7 GTP doub 191 n y 
C8 H8 GTP sing 192 n n 
N7 C5 GTP sing 193 n y 
C5 C6 GTP sing 194 n n 
C5 C4 GTP doub 195 n y 
C6 O6 GTP doub 196 n n 
C6 N1 GTP sing 197 n n 
N1 C2 GTP sing 198 n n 
N1 HN1 GTP sing 199 n n 
C2 N2 GTP sing 200 n n 
C2 N3 GTP doub 201 n n 
N2 HN21 GTP sing 202 n n 
N2 HN22 GTP sing 203 n n 
N3 C4 GTP sing 204 n n 
#
_atom_sites.entry_id                     3ETD 
_atom_sites.fract_transf_matrix[1][1]    0.008171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001806 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006148 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 550 550 GLU GLU . 
H 3 NDP A 1 551 551 NDP NDP . 
I 4 GTP A 1 553 553 GTP GTP . 
J 5 B1T A 1 552 1 B1T B1T . 
K 2 GLU B 1 550 550 GLU GLU . 
L 3 NDP B 1 551 551 NDP NDP . 
M 4 GTP B 1 553 553 GTP GTP . 
N 5 B1T B 1 552 1 B1T B1T . 
O 2 GLU C 1 550 550 GLU GLU . 
P 3 NDP C 1 551 551 NDP NDP . 
Q 4 GTP C 1 553 553 GTP GTP . 
R 5 B1T C 1 552 1 B1T B1T . 
S 2 GLU D 1 550 550 GLU GLU . 
T 3 NDP D 1 551 551 NDP NDP . 
U 4 GTP D 1 553 553 GTP GTP . 
V 5 B1T D 1 552 1 B1T B1T . 
W 2 GLU E 1 550 550 GLU GLU . 
X 3 NDP E 1 551 551 NDP NDP . 
Y 4 GTP E 1 553 553 GTP GTP . 
Z 5 B1T E 1 552 1 B1T B1T . 
AA 2 GLU F 1 550 550 GLU GLU . 
BA 3 NDP F 1 551 551 NDP NDP . 
CA 4 GTP F 1 553 553 GTP GTP . 
DA 5 B1T F 1 552 1 B1T B1T . 
EA 6 HOH A 1 554 9 HOH TIP . 
EA 6 HOH A 2 555 16 HOH TIP . 
EA 6 HOH A 3 556 23 HOH TIP . 
EA 6 HOH A 4 557 24 HOH TIP . 
EA 6 HOH A 5 558 31 HOH TIP . 
EA 6 HOH A 6 559 46 HOH TIP . 
EA 6 HOH A 7 560 56 HOH TIP . 
EA 6 HOH A 8 561 63 HOH TIP . 
EA 6 HOH A 9 562 66 HOH TIP . 
EA 6 HOH A 10 563 78 HOH TIP . 
EA 6 HOH A 11 564 82 HOH TIP . 
EA 6 HOH A 12 565 85 HOH TIP . 
EA 6 HOH A 13 566 86 HOH TIP . 
FA 6 HOH B 1 554 6 HOH TIP . 
FA 6 HOH B 2 555 7 HOH TIP . 
FA 6 HOH B 3 556 12 HOH TIP . 
FA 6 HOH B 4 557 15 HOH TIP . 
FA 6 HOH B 5 558 21 HOH TIP . 
FA 6 HOH B 6 559 30 HOH TIP . 
FA 6 HOH B 7 560 32 HOH TIP . 
FA 6 HOH B 8 561 37 HOH TIP . 
FA 6 HOH B 9 562 38 HOH TIP . 
FA 6 HOH B 10 563 43 HOH TIP . 
FA 6 HOH B 11 564 45 HOH TIP . 
FA 6 HOH B 12 565 49 HOH TIP . 
FA 6 HOH B 13 566 58 HOH TIP . 
FA 6 HOH B 14 567 68 HOH TIP . 
FA 6 HOH B 15 568 70 HOH TIP . 
FA 6 HOH B 16 569 72 HOH TIP . 
FA 6 HOH B 17 570 74 HOH TIP . 
GA 6 HOH C 1 554 5 HOH TIP . 
GA 6 HOH C 2 555 10 HOH TIP . 
GA 6 HOH C 3 556 11 HOH TIP . 
GA 6 HOH C 4 557 25 HOH TIP . 
GA 6 HOH C 5 558 27 HOH TIP . 
GA 6 HOH C 6 559 28 HOH TIP . 
GA 6 HOH C 7 560 33 HOH TIP . 
GA 6 HOH C 8 561 34 HOH TIP . 
GA 6 HOH C 9 562 36 HOH TIP . 
GA 6 HOH C 10 563 41 HOH TIP . 
GA 6 HOH C 11 564 48 HOH TIP . 
GA 6 HOH C 12 565 52 HOH TIP . 
GA 6 HOH C 13 566 54 HOH TIP . 
GA 6 HOH C 14 567 55 HOH TIP . 
GA 6 HOH C 15 568 57 HOH TIP . 
GA 6 HOH C 16 569 65 HOH TIP . 
GA 6 HOH C 17 570 69 HOH TIP . 
GA 6 HOH C 18 571 73 HOH TIP . 
GA 6 HOH C 19 572 88 HOH TIP . 
HA 6 HOH D 1 554 1 HOH TIP . 
HA 6 HOH D 2 555 8 HOH TIP . 
HA 6 HOH D 3 556 14 HOH TIP . 
HA 6 HOH D 4 557 17 HOH TIP . 
HA 6 HOH D 5 558 18 HOH TIP . 
HA 6 HOH D 6 559 19 HOH TIP . 
HA 6 HOH D 7 560 20 HOH TIP . 
HA 6 HOH D 8 561 26 HOH TIP . 
HA 6 HOH D 9 562 29 HOH TIP . 
HA 6 HOH D 10 563 35 HOH TIP . 
HA 6 HOH D 11 564 47 HOH TIP . 
HA 6 HOH D 12 565 50 HOH TIP . 
HA 6 HOH D 13 566 53 HOH TIP . 
HA 6 HOH D 14 567 61 HOH TIP . 
HA 6 HOH D 15 568 62 HOH TIP . 
HA 6 HOH D 16 569 64 HOH TIP . 
HA 6 HOH D 17 570 67 HOH TIP . 
HA 6 HOH D 18 571 77 HOH TIP . 
HA 6 HOH D 19 572 80 HOH TIP . 
HA 6 HOH D 20 573 83 HOH TIP . 
IA 6 HOH E 1 554 2 HOH TIP . 
IA 6 HOH E 2 555 3 HOH TIP . 
IA 6 HOH E 3 556 13 HOH TIP . 
IA 6 HOH E 4 557 22 HOH TIP . 
IA 6 HOH E 5 558 40 HOH TIP . 
IA 6 HOH E 6 559 42 HOH TIP . 
IA 6 HOH E 7 560 44 HOH TIP . 
IA 6 HOH E 8 561 51 HOH TIP . 
IA 6 HOH E 9 562 71 HOH TIP . 
IA 6 HOH E 10 563 75 HOH TIP . 
IA 6 HOH E 11 564 76 HOH TIP . 
IA 6 HOH E 12 565 79 HOH TIP . 
IA 6 HOH E 13 566 84 HOH TIP . 
JA 6 HOH F 1 554 4 HOH TIP . 
JA 6 HOH F 2 555 39 HOH TIP . 
JA 6 HOH F 3 556 59 HOH TIP . 
JA 6 HOH F 4 557 60 HOH TIP . 
JA 6 HOH F 5 558 81 HOH TIP . 
JA 6 HOH F 6 559 87 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . Q 4 83.972 36.097 115.628 1 131 ? PG GTP 553 C 1 
HETATM 2 O O1G GTP . . . Q 4 84.899 36.061 114.463 1 130.53 ? O1G GTP 553 C 1 
HETATM 3 O O2G GTP . . . Q 4 84.223 37.492 116.419 1 129.58 ? O2G GTP 553 C 1 
HETATM 4 O O3G GTP . . . Q 4 84.29 34.855 116.607 1 129.81 ? O3G GTP 553 C 1 
HETATM 5 O O3B GTP . . . Q 4 82.405 36.057 115.092 1 128.77 ? O3B GTP 553 C 1 
HETATM 6 P PB GTP . . . Q 4 81.977 34.677 114.27 1 127.08 ? PB GTP 553 C 1 
HETATM 7 O O1B GTP . . . Q 4 82.83 34.506 113.079 1 126.93 ? O1B GTP 553 C 1 
HETATM 8 O O2B GTP . . . Q 4 82.114 33.371 115.206 1 125.96 ? O2B GTP 553 C 1 
HETATM 9 O O3A GTP . . . Q 4 80.437 34.926 113.821 1 122.9 ? O3A GTP 553 C 1 
HETATM 10 P PA GTP . . . Q 4 79.737 33.7 113.022 1 119.78 ? PA GTP 553 C 1 
HETATM 11 O O1A GTP . . . Q 4 80.472 33.454 111.762 1 120.27 ? O1A GTP 553 C 1 
HETATM 12 O O2A GTP . . . Q 4 79.711 32.351 113.875 1 118.91 ? O2A GTP 553 C 1 
HETATM 13 O O5' GTP . . . Q 4 78.273 34.29 112.688 1 117.96 ? O5' GTP 553 C 1 
HETATM 14 C C5' GTP . . . Q 4 77.383 33.37 112.088 1 114.75 ? C5' GTP 553 C 1 
HETATM 15 C C4' GTP . . . Q 4 76.109 34.192 111.791 1 113.78 ? C4' GTP 553 C 1 
HETATM 16 O O4' GTP . . . Q 4 76.425 35.112 110.671 1 112.93 ? O4' GTP 553 C 1 
HETATM 17 C C3' GTP . . . Q 4 74.937 33.346 111.256 1 113.34 ? C3' GTP 553 C 1 
HETATM 18 O O3' GTP . . . Q 4 73.682 33.801 111.832 1 112.53 ? O3' GTP 553 C 1 
HETATM 19 C C2' GTP . . . Q 4 74.961 33.469 109.703 1 112.86 ? C2' GTP 553 C 1 
HETATM 20 O O2' GTP . . . Q 4 73.727 33.99 109.179 1 113.31 ? O2' GTP 553 C 1 
HETATM 21 C C1' GTP . . . Q 4 76.152 34.39 109.389 1 112.06 ? C1' GTP 553 C 1 
HETATM 22 N N9 GTP . . . Q 4 77.367 33.651 108.852 1 110.3 ? N9 GTP 553 C 1 
HETATM 23 C C8 GTP . . . Q 4 78.647 34.107 109.003 1 109.55 ? C8 GTP 553 C 1 
HETATM 24 N N7 GTP . . . Q 4 79.505 33.297 108.452 1 108.44 ? N7 GTP 553 C 1 
HETATM 25 C C5 GTP . . . Q 4 78.865 32.258 107.89 1 107.79 ? C5 GTP 553 C 1 
HETATM 26 C C6 GTP . . . Q 4 79.309 31.103 107.161 1 107.21 ? C6 GTP 553 C 1 
HETATM 27 O O6 GTP . . . Q 4 80.492 30.917 106.946 1 108.01 ? O6 GTP 553 C 1 
HETATM 28 N N1 GTP . . . Q 4 78.376 30.213 106.71 1 105.84 ? N1 GTP 553 C 1 
HETATM 29 C C2 GTP . . . Q 4 77.038 30.424 106.958 1 105.36 ? C2 GTP 553 C 1 
HETATM 30 N N2 GTP . . . Q 4 76.137 29.505 106.489 1 104.05 ? N2 GTP 553 C 1 
HETATM 31 N N3 GTP . . . Q 4 76.595 31.494 107.638 1 106.43 ? N3 GTP 553 C 1 
HETATM 32 C C4 GTP . . . Q 4 77.468 32.436 108.122 1 108.27 ? C4 GTP 553 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#