data_3ETG # _model_server_result.job_id z9GXupas-wQy4q_Pv7-TUQ _model_server_result.datetime_utc '2024-11-14 22:12:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3etg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":553}' # _entry.id 3ETG # _exptl.entry_id 3ETG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.5 _cell.angle_gamma 90 _cell.entry_id 3ETG _cell.length_a 122.3 _cell.length_b 102.2 _cell.length_c 167.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ETG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 M N N ? 4 Q N N ? 4 U N N ? 4 Y N N ? 4 CA N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 3ETG _atom_sites.fract_transf_matrix[1][1] 0.008177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001813 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GLU A 1 550 550 GLU GLU . H 3 NDP A 1 551 551 NDP NDP . I 4 GTP A 1 553 553 GTP GTP . J 5 GWD A 1 552 1 GWD GWD . K 2 GLU B 1 550 550 GLU GLU . L 3 NDP B 1 551 551 NDP NDP . M 4 GTP B 1 553 553 GTP GTP . N 5 GWD B 1 552 1 GWD GWD . O 2 GLU C 1 550 550 GLU GLU . P 3 NDP C 1 551 551 NDP NDP . Q 4 GTP C 1 553 553 GTP GTP . R 5 GWD C 1 552 1 GWD GWD . S 2 GLU D 1 550 550 GLU GLU . T 3 NDP D 1 551 551 NDP NDP . U 4 GTP D 1 553 553 GTP GTP . V 5 GWD D 1 552 1 GWD GWD . W 2 GLU E 1 550 550 GLU GLU . X 3 NDP E 1 551 551 NDP NDP . Y 4 GTP E 1 553 553 GTP GTP . Z 5 GWD E 1 552 1 GWD GWD . AA 2 GLU F 1 550 550 GLU GLU . BA 3 NDP F 1 551 551 NDP NDP . CA 4 GTP F 1 553 553 GTP GTP . DA 5 GWD F 1 552 1 GWD GWD . EA 6 HOH A 1 554 2 HOH TIP . EA 6 HOH A 2 555 14 HOH TIP . EA 6 HOH A 3 556 16 HOH TIP . EA 6 HOH A 4 557 17 HOH TIP . EA 6 HOH A 5 558 18 HOH TIP . EA 6 HOH A 6 559 20 HOH TIP . EA 6 HOH A 7 560 23 HOH TIP . EA 6 HOH A 8 561 25 HOH TIP . EA 6 HOH A 9 562 29 HOH TIP . EA 6 HOH A 10 563 50 HOH TIP . EA 6 HOH A 11 564 78 HOH TIP . EA 6 HOH A 12 565 81 HOH TIP . EA 6 HOH A 13 566 94 HOH TIP . EA 6 HOH A 14 567 98 HOH TIP . EA 6 HOH A 15 568 99 HOH TIP . EA 6 HOH A 16 569 102 HOH TIP . EA 6 HOH A 17 570 104 HOH TIP . EA 6 HOH A 18 571 110 HOH TIP . EA 6 HOH A 19 572 112 HOH TIP . EA 6 HOH A 20 573 116 HOH TIP . EA 6 HOH A 21 574 118 HOH TIP . EA 6 HOH A 22 575 120 HOH TIP . EA 6 HOH A 23 576 121 HOH TIP . EA 6 HOH A 24 577 126 HOH TIP . EA 6 HOH A 25 578 132 HOH TIP . EA 6 HOH A 26 579 134 HOH TIP . EA 6 HOH A 27 580 137 HOH TIP . EA 6 HOH A 28 581 138 HOH TIP . EA 6 HOH A 29 582 147 HOH TIP . EA 6 HOH A 30 583 149 HOH TIP . FA 6 HOH B 1 554 11 HOH TIP . FA 6 HOH B 2 555 12 HOH TIP . FA 6 HOH B 3 556 13 HOH TIP . FA 6 HOH B 4 557 21 HOH TIP . FA 6 HOH B 5 558 22 HOH TIP . FA 6 HOH B 6 559 27 HOH TIP . FA 6 HOH B 7 560 37 HOH TIP . FA 6 HOH B 8 561 40 HOH TIP . FA 6 HOH B 9 562 42 HOH TIP . FA 6 HOH B 10 563 58 HOH TIP . FA 6 HOH B 11 564 65 HOH TIP . FA 6 HOH B 12 565 66 HOH TIP . FA 6 HOH B 13 566 69 HOH TIP . FA 6 HOH B 14 567 71 HOH TIP . FA 6 HOH B 15 568 74 HOH TIP . FA 6 HOH B 16 569 87 HOH TIP . FA 6 HOH B 17 570 88 HOH TIP . FA 6 HOH B 18 571 95 HOH TIP . FA 6 HOH B 19 572 103 HOH TIP . FA 6 HOH B 20 573 108 HOH TIP . FA 6 HOH B 21 574 115 HOH TIP . FA 6 HOH B 22 575 129 HOH TIP . FA 6 HOH B 23 576 133 HOH TIP . FA 6 HOH B 24 577 144 HOH TIP . FA 6 HOH B 25 578 148 HOH TIP . FA 6 HOH B 26 579 150 HOH TIP . FA 6 HOH B 27 580 152 HOH TIP . FA 6 HOH B 28 581 153 HOH TIP . FA 6 HOH B 29 582 155 HOH TIP . GA 6 HOH C 1 554 1 HOH TIP . GA 6 HOH C 2 555 4 HOH TIP . GA 6 HOH C 3 556 19 HOH TIP . GA 6 HOH C 4 557 24 HOH TIP . GA 6 HOH C 5 558 31 HOH TIP . GA 6 HOH C 6 559 32 HOH TIP . GA 6 HOH C 7 560 43 HOH TIP . GA 6 HOH C 8 561 44 HOH TIP . GA 6 HOH C 9 562 46 HOH TIP . GA 6 HOH C 10 563 49 HOH TIP . GA 6 HOH C 11 564 59 HOH TIP . GA 6 HOH C 12 565 64 HOH TIP . GA 6 HOH C 13 566 70 HOH TIP . GA 6 HOH C 14 567 77 HOH TIP . GA 6 HOH C 15 568 84 HOH TIP . GA 6 HOH C 16 569 86 HOH TIP . GA 6 HOH C 17 570 96 HOH TIP . GA 6 HOH C 18 571 107 HOH TIP . GA 6 HOH C 19 572 109 HOH TIP . GA 6 HOH C 20 573 114 HOH TIP . GA 6 HOH C 21 574 125 HOH TIP . GA 6 HOH C 22 575 128 HOH TIP . GA 6 HOH C 23 576 130 HOH TIP . GA 6 HOH C 24 577 136 HOH TIP . GA 6 HOH C 25 578 139 HOH TIP . GA 6 HOH C 26 579 141 HOH TIP . GA 6 HOH C 27 580 142 HOH TIP . GA 6 HOH C 28 581 143 HOH TIP . GA 6 HOH C 29 582 145 HOH TIP . HA 6 HOH D 1 554 3 HOH TIP . HA 6 HOH D 2 555 26 HOH TIP . HA 6 HOH D 3 556 28 HOH TIP . HA 6 HOH D 4 557 30 HOH TIP . HA 6 HOH D 5 558 33 HOH TIP . HA 6 HOH D 6 559 34 HOH TIP . HA 6 HOH D 7 560 36 HOH TIP . HA 6 HOH D 8 561 38 HOH TIP . HA 6 HOH D 9 562 41 HOH TIP . HA 6 HOH D 10 563 54 HOH TIP . HA 6 HOH D 11 564 56 HOH TIP . HA 6 HOH D 12 565 57 HOH TIP . HA 6 HOH D 13 566 62 HOH TIP . HA 6 HOH D 14 567 67 HOH TIP . HA 6 HOH D 15 568 75 HOH TIP . HA 6 HOH D 16 569 79 HOH TIP . HA 6 HOH D 17 570 82 HOH TIP . HA 6 HOH D 18 571 83 HOH TIP . HA 6 HOH D 19 572 89 HOH TIP . HA 6 HOH D 20 573 91 HOH TIP . HA 6 HOH D 21 574 92 HOH TIP . HA 6 HOH D 22 575 97 HOH TIP . HA 6 HOH D 23 576 101 HOH TIP . HA 6 HOH D 24 577 105 HOH TIP . HA 6 HOH D 25 578 123 HOH TIP . HA 6 HOH D 26 579 124 HOH TIP . HA 6 HOH D 27 580 135 HOH TIP . HA 6 HOH D 28 581 140 HOH TIP . HA 6 HOH D 29 582 146 HOH TIP . HA 6 HOH D 30 583 154 HOH TIP . IA 6 HOH E 1 554 5 HOH TIP . IA 6 HOH E 2 555 9 HOH TIP . IA 6 HOH E 3 556 10 HOH TIP . IA 6 HOH E 4 557 15 HOH TIP . IA 6 HOH E 5 558 35 HOH TIP . IA 6 HOH E 6 559 39 HOH TIP . IA 6 HOH E 7 560 45 HOH TIP . IA 6 HOH E 8 561 53 HOH TIP . IA 6 HOH E 9 562 63 HOH TIP . IA 6 HOH E 10 563 72 HOH TIP . IA 6 HOH E 11 564 76 HOH TIP . IA 6 HOH E 12 565 93 HOH TIP . IA 6 HOH E 13 566 113 HOH TIP . IA 6 HOH E 14 567 131 HOH TIP . IA 6 HOH E 15 568 151 HOH TIP . JA 6 HOH F 1 554 6 HOH TIP . JA 6 HOH F 2 555 7 HOH TIP . JA 6 HOH F 3 556 8 HOH TIP . JA 6 HOH F 4 557 47 HOH TIP . JA 6 HOH F 5 558 48 HOH TIP . JA 6 HOH F 6 559 51 HOH TIP . JA 6 HOH F 7 560 52 HOH TIP . JA 6 HOH F 8 561 55 HOH TIP . JA 6 HOH F 9 562 60 HOH TIP . JA 6 HOH F 10 563 61 HOH TIP . JA 6 HOH F 11 564 68 HOH TIP . JA 6 HOH F 12 565 73 HOH TIP . JA 6 HOH F 13 566 80 HOH TIP . JA 6 HOH F 14 567 85 HOH TIP . JA 6 HOH F 15 568 90 HOH TIP . JA 6 HOH F 16 569 100 HOH TIP . JA 6 HOH F 17 570 106 HOH TIP . JA 6 HOH F 18 571 111 HOH TIP . JA 6 HOH F 19 572 117 HOH TIP . JA 6 HOH F 20 573 119 HOH TIP . JA 6 HOH F 21 574 122 HOH TIP . JA 6 HOH F 22 575 127 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . Y 4 78.906 73.555 128.25 1 66.45 ? PG GTP 553 E 1 HETATM 2 O O1G GTP . . . Y 4 78.994 72.188 127.757 1 71.07 ? O1G GTP 553 E 1 HETATM 3 O O2G GTP . . . Y 4 77.914 74.412 127.316 1 65.49 ? O2G GTP 553 E 1 HETATM 4 O O3G GTP . . . Y 4 80.352 74.251 128.268 1 68.99 ? O3G GTP 553 E 1 HETATM 5 O O3B GTP . . . Y 4 78.298 73.559 129.705 1 67.55 ? O3B GTP 553 E 1 HETATM 6 P PB GTP . . . Y 4 79.09 72.776 130.906 1 68.42 ? PB GTP 553 E 1 HETATM 7 O O1B GTP . . . Y 4 79.856 73.435 132.007 1 71.17 ? O1B GTP 553 E 1 HETATM 8 O O2B GTP . . . Y 4 78.421 71.397 131.379 1 67.62 ? O2B GTP 553 E 1 HETATM 9 O O3A GTP . . . Y 4 77.818 73.542 131.346 1 68.32 ? O3A GTP 553 E 1 HETATM 10 P PA GTP . . . Y 4 77.228 73.862 132.77 1 66.35 ? PA GTP 553 E 1 HETATM 11 O O1A GTP . . . Y 4 76.983 72.638 133.561 1 65.46 ? O1A GTP 553 E 1 HETATM 12 O O2A GTP . . . Y 4 78.131 74.959 133.516 1 66.28 ? O2A GTP 553 E 1 HETATM 13 O O5' GTP . . . Y 4 76.11 74.458 131.886 1 66.24 ? O5' GTP 553 E 1 HETATM 14 C C5' GTP . . . Y 4 75.001 75.217 132.094 1 68.74 ? C5' GTP 553 E 1 HETATM 15 C C4' GTP . . . Y 4 74.878 74.919 130.554 1 69.7 ? C4' GTP 553 E 1 HETATM 16 O O4' GTP . . . Y 4 73.564 75.443 130.934 1 70.42 ? O4' GTP 553 E 1 HETATM 17 C C3' GTP . . . Y 4 74.244 75.077 129.048 1 71.69 ? C3' GTP 553 E 1 HETATM 18 O O3' GTP . . . Y 4 73.591 73.851 128.683 1 70.14 ? O3' GTP 553 E 1 HETATM 19 C C2' GTP . . . Y 4 73.289 76.244 128.865 1 73.44 ? C2' GTP 553 E 1 HETATM 20 O O2' GTP . . . Y 4 72.003 75.905 128.376 1 76.92 ? O2' GTP 553 E 1 HETATM 21 C C1' GTP . . . Y 4 73.306 76.741 130.172 1 73.36 ? C1' GTP 553 E 1 HETATM 22 N N9 GTP . . . Y 4 74.245 77.956 130.215 1 73.73 ? N9 GTP 553 E 1 HETATM 23 C C8 GTP . . . Y 4 75.245 78.266 131.098 1 73.98 ? C8 GTP 553 E 1 HETATM 24 N N7 GTP . . . Y 4 75.803 79.407 130.776 1 74.58 ? N7 GTP 553 E 1 HETATM 25 C C5 GTP . . . Y 4 75.214 79.925 129.675 1 72.48 ? C5 GTP 553 E 1 HETATM 26 C C6 GTP . . . Y 4 75.398 81.122 128.894 1 70.88 ? C6 GTP 553 E 1 HETATM 27 O O6 GTP . . . Y 4 76.253 81.935 129.187 1 69.24 ? O6 GTP 553 E 1 HETATM 28 N N1 GTP . . . Y 4 74.582 81.325 127.799 1 69.67 ? N1 GTP 553 E 1 HETATM 29 C C2 GTP . . . Y 4 73.613 80.402 127.468 1 68.97 ? C2 GTP 553 E 1 HETATM 30 N N2 GTP . . . Y 4 72.829 80.647 126.377 1 66.36 ? N2 GTP 553 E 1 HETATM 31 N N3 GTP . . . Y 4 73.429 79.283 128.184 1 69.79 ? N3 GTP 553 E 1 HETATM 32 C C4 GTP . . . Y 4 74.201 79.012 129.284 1 72.69 ? C4 GTP 553 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #