data_3ETL # _model_server_result.job_id MN8ubVBANK8R7_xf1AOGbA _model_server_result.datetime_utc '2025-02-05 16:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3etl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3ETL # _exptl.entry_id 3ETL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ETL _cell.length_a 81.1 _cell.length_b 81.1 _cell.length_c 108.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ETL _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 98 A GLN 98 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc2 A OG1 THR 112 A THR 112 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 A OD1 ASP 246 A ASP 246 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc4 B O1B ANP . A ANP 401 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 C MG MG . A MG 501 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc6 C MG MG . A MG 501 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc7 C MG MG . A MG 501 1_555 E O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc8 D MG MG . A MG 502 1_555 E O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc9 D MG MG . A MG 502 1_555 E O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc10 D MG MG . A MG 502 1_555 E O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc11 D MG MG . A MG 502 1_555 E O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3ETL _atom_sites.fract_transf_matrix[1][1] 0.01233 _atom_sites.fract_transf_matrix[1][2] 0.007119 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 401 ANP ANP . C 3 MG A 1 501 501 MG MG . D 3 MG A 1 502 502 MG MG . E 4 HOH A 1 601 601 HOH TIP . E 4 HOH A 2 602 602 HOH TIP . E 4 HOH A 3 603 603 HOH TIP . E 4 HOH A 4 604 604 HOH TIP . E 4 HOH A 5 605 605 HOH TIP . E 4 HOH A 6 606 606 HOH TIP . E 4 HOH A 7 607 607 HOH TIP . E 4 HOH A 8 608 608 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 25.074 58.51 -10.001 1 41.25 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 25.344 58.349 -8.617 1 39.67 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 23.607 58.338 -10.242 1 46.32 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 25.454 59.836 -10.418 1 39.91 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 25.732 55.809 -10.692 1 35.68 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 24.723 55.513 -9.642 1 36.75 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 27.009 55.272 -10.275 1 36.01 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 25.91 57.366 -10.887 1 38.7 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 24.045 54.098 -12.238 1 35.28 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 24.148 52.98 -11.197 1 40.61 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 22.792 54.848 -12.019 1 38.89 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 25.322 55.106 -12.103 1 38.72 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 24.035 53.414 -13.747 1 41.88 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 23.855 54.245 -15.01 1 42.41 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 23.978 53.46 -16.095 1 45.63 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 23.237 52.189 -15.885 1 44.47 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 23.205 54.118 -17.28 1 46.25 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 23.721 55.305 -17.755 1 50.18 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 22.654 52.941 -18.137 1 45.46 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 23.586 52.705 -19.338 1 49.32 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 22.699 51.741 -17.166 1 43.19 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 21.441 51.268 -17.028 1 39.57 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 20.481 51.665 -16.08 1 37.89 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 19.394 51.002 -16.266 1 36.6 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 19.567 50.159 -17.311 1 36.39 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 18.754 49.232 -17.948 1 35.46 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 17.48 49.035 -17.53 1 34.75 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 19.27 48.499 -19.042 1 34.39 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 20.601 48.702 -19.491 1 33.02 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 21.421 49.606 -18.891 1 35.48 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 20.854 50.318 -17.792 1 37.02 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #