data_3EU1 # _model_server_result.job_id juIYLk_iL7KSHo7xU-0DbA _model_server_result.datetime_utc '2024-11-17 22:23:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":142}' # _entry.id 3EU1 # _exptl.entry_id 3EU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EU1 _cell.length_a 53.678 _cell.length_b 66.896 _cell.length_c 157.593 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 91 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 92 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 147 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.343 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3EU1 _atom_sites.fract_transf_matrix[1][1] 0.01863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 142 142 HEM HEM . F 3 HEM B 1 147 147 HEM HEM . G 3 HEM C 1 142 142 HEM HEM . H 3 HEM D 1 147 147 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 4.602 3.22 -5.41 1 54.21 ? CHA HEM 142 A 1 HETATM 2 C CHB HEM . . . E 3 0.282 3.625 -3.29 1 52.89 ? CHB HEM 142 A 1 HETATM 3 C CHC HEM . . . E 3 -1.889 3.148 -7.644 1 49.5 ? CHC HEM 142 A 1 HETATM 4 C CHD HEM . . . E 3 2.314 1.808 -9.573 1 51.94 ? CHD HEM 142 A 1 HETATM 5 C C1A HEM . . . E 3 3.647 3.471 -4.463 1 53.47 ? C1A HEM 142 A 1 HETATM 6 C C2A HEM . . . E 3 3.924 3.942 -3.117 1 55.36 ? C2A HEM 142 A 1 HETATM 7 C C3A HEM . . . E 3 2.716 4.065 -2.516 1 54.56 ? C3A HEM 142 A 1 HETATM 8 C C4A HEM . . . E 3 1.667 3.663 -3.472 1 53.35 ? C4A HEM 142 A 1 HETATM 9 C CMA HEM . . . E 3 2.465 4.539 -1.057 1 53.86 ? CMA HEM 142 A 1 HETATM 10 C CAA HEM . . . E 3 5.391 4.23 -2.594 1 58.05 ? CAA HEM 142 A 1 HETATM 11 C CBA HEM . . . E 3 5.676 4.218 -1.071 1 60.42 ? CBA HEM 142 A 1 HETATM 12 C CGA HEM . . . E 3 6.713 3.223 -0.529 1 61.95 ? CGA HEM 142 A 1 HETATM 13 O O1A HEM . . . E 3 7.013 3.304 0.695 1 61.86 ? O1A HEM 142 A 1 HETATM 14 O O2A HEM . . . E 3 7.252 2.33 -1.253 1 63.05 ? O2A HEM 142 A 1 HETATM 15 C C1B HEM . . . E 3 -0.691 3.524 -4.29 1 51.67 ? C1B HEM 142 A 1 HETATM 16 C C2B HEM . . . E 3 -2.138 3.58 -4.11 1 51.38 ? C2B HEM 142 A 1 HETATM 17 C C3B HEM . . . E 3 -2.726 3.443 -5.315 1 50.79 ? C3B HEM 142 A 1 HETATM 18 C C4B HEM . . . E 3 -1.682 3.303 -6.299 1 49.77 ? C4B HEM 142 A 1 HETATM 19 C CMB HEM . . . E 3 -2.867 3.764 -2.761 1 50.32 ? CMB HEM 142 A 1 HETATM 20 C CAB HEM . . . E 3 -4.244 3.454 -5.649 1 51.03 ? CAB HEM 142 A 1 HETATM 21 C CBB HEM . . . E 3 -5.084 2.466 -5.315 1 51.22 ? CBB HEM 142 A 1 HETATM 22 C C1C HEM . . . E 3 -0.965 2.668 -8.54 1 49.84 ? C1C HEM 142 A 1 HETATM 23 C C2C HEM . . . E 3 -1.235 2.157 -9.865 1 49.34 ? C2C HEM 142 A 1 HETATM 24 C C3C HEM . . . E 3 -0.074 1.788 -10.398 1 49.78 ? C3C HEM 142 A 1 HETATM 25 C C4C HEM . . . E 3 0.97 2.045 -9.432 1 50.09 ? C4C HEM 142 A 1 HETATM 26 C CMC HEM . . . E 3 -2.628 2.069 -10.536 1 49.75 ? CMC HEM 142 A 1 HETATM 27 C CAC HEM . . . E 3 0.121 1.191 -11.807 1 51.36 ? CAC HEM 142 A 1 HETATM 28 C CBC HEM . . . E 3 -0.684 0.221 -12.27 1 51.54 ? CBC HEM 142 A 1 HETATM 29 C C1D HEM . . . E 3 3.31 2.189 -8.675 1 54.31 ? C1D HEM 142 A 1 HETATM 30 C C2D HEM . . . E 3 4.726 2.322 -9 1 55.35 ? C2D HEM 142 A 1 HETATM 31 C C3D HEM . . . E 3 5.444 2.762 -7.698 1 55.33 ? C3D HEM 142 A 1 HETATM 32 C C4D HEM . . . E 3 4.38 2.856 -6.722 1 54.84 ? C4D HEM 142 A 1 HETATM 33 C CMD HEM . . . E 3 5.353 2.066 -10.39 1 54.98 ? CMD HEM 142 A 1 HETATM 34 C CAD HEM . . . E 3 6.951 3.066 -7.431 1 56.59 ? CAD HEM 142 A 1 HETATM 35 C CBD HEM . . . E 3 7.831 1.814 -7.506 1 57.44 ? CBD HEM 142 A 1 HETATM 36 C CGD HEM . . . E 3 8.402 1.393 -6.162 1 58.08 ? CGD HEM 142 A 1 HETATM 37 O O1D HEM . . . E 3 9.581 0.93 -6.165 1 58.69 ? O1D HEM 142 A 1 HETATM 38 O O2D HEM . . . E 3 7.711 1.488 -5.103 1 57.27 ? O2D HEM 142 A 1 HETATM 39 N NA HEM . . . E 3 2.287 3.303 -4.651 1 52.33 ? NA HEM 142 A 1 HETATM 40 N NB HEM . . . E 3 -0.462 3.35 -5.651 1 50.44 ? NB HEM 142 A 1 HETATM 41 N NC HEM . . . E 3 0.389 2.579 -8.306 1 50.41 ? NC HEM 142 A 1 HETATM 42 N ND HEM . . . E 3 3.146 2.502 -7.315 1 54.02 ? ND HEM 142 A 1 HETATM 43 FE FE HEM . . . E 3 1.189 2.503 -6.389 1 49.66 ? FE HEM 142 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #