data_3EV0 # _model_server_result.job_id oA4N28_Cdm5LqEQ9qxt6Mw _model_server_result.datetime_utc '2024-12-01 04:47:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ev0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":907}' # _entry.id 3EV0 # _exptl.entry_id 3EV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.66 _cell.angle_gamma 90 _cell.entry_id 3EV0 _cell.length_a 100.965 _cell.length_b 32.641 _cell.length_c 72.908 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,M 1 1 B,F,G,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 3EV0 _atom_sites.fract_transf_matrix[1][1] 0.009904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000114 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 904 904 DMS DMS . D 2 DMS A 1 905 905 DMS DMS . E 2 DMS A 1 910 910 DMS DMS . F 2 DMS B 1 902 902 DMS DMS . G 2 DMS B 1 907 907 DMS DMS . H 2 DMS B 1 911 911 DMS DMS . I 2 DMS B 1 912 912 DMS DMS . J 2 DMS B 1 913 913 DMS DMS . K 2 DMS B 1 914 914 DMS DMS . L 2 DMS B 1 994 994 DMS DMS . M 3 HOH A 1 911 3 HOH HOH . M 3 HOH A 2 912 4 HOH HOH . M 3 HOH A 3 913 5 HOH HOH . M 3 HOH A 4 914 6 HOH HOH . M 3 HOH A 5 915 7 HOH HOH . M 3 HOH A 6 916 8 HOH HOH . M 3 HOH A 7 917 9 HOH HOH . M 3 HOH A 8 918 10 HOH HOH . M 3 HOH A 9 919 12 HOH HOH . M 3 HOH A 10 920 13 HOH HOH . M 3 HOH A 11 921 15 HOH HOH . M 3 HOH A 12 922 16 HOH HOH . M 3 HOH A 13 923 17 HOH HOH . M 3 HOH A 14 924 18 HOH HOH . M 3 HOH A 15 925 19 HOH HOH . M 3 HOH A 16 926 20 HOH HOH . M 3 HOH A 17 927 21 HOH HOH . M 3 HOH A 18 928 22 HOH HOH . M 3 HOH A 19 929 23 HOH HOH . M 3 HOH A 20 930 26 HOH HOH . M 3 HOH A 21 931 32 HOH HOH . M 3 HOH A 22 932 34 HOH HOH . M 3 HOH A 23 933 35 HOH HOH . M 3 HOH A 24 934 37 HOH HOH . M 3 HOH A 25 935 39 HOH HOH . M 3 HOH A 26 936 40 HOH HOH . M 3 HOH A 27 937 42 HOH HOH . M 3 HOH A 28 938 43 HOH HOH . M 3 HOH A 29 939 54 HOH HOH . M 3 HOH A 30 940 57 HOH HOH . M 3 HOH A 31 941 58 HOH HOH . M 3 HOH A 32 942 60 HOH HOH . M 3 HOH A 33 943 64 HOH HOH . M 3 HOH A 34 944 65 HOH HOH . M 3 HOH A 35 945 67 HOH HOH . M 3 HOH A 36 946 69 HOH HOH . M 3 HOH A 37 947 73 HOH HOH . M 3 HOH A 38 948 78 HOH HOH . M 3 HOH A 39 949 80 HOH HOH . M 3 HOH A 40 950 81 HOH HOH . M 3 HOH A 41 951 82 HOH HOH . M 3 HOH A 42 952 90 HOH HOH . M 3 HOH A 43 953 94 HOH HOH . M 3 HOH A 44 954 98 HOH HOH . M 3 HOH A 45 955 100 HOH HOH . M 3 HOH A 46 956 110 HOH HOH . M 3 HOH A 47 957 115 HOH HOH . M 3 HOH A 48 958 116 HOH HOH . M 3 HOH A 49 959 120 HOH HOH . M 3 HOH A 50 960 125 HOH HOH . M 3 HOH A 51 961 126 HOH HOH . M 3 HOH A 52 962 129 HOH HOH . M 3 HOH A 53 963 132 HOH HOH . M 3 HOH A 54 964 133 HOH HOH . M 3 HOH A 55 965 135 HOH HOH . M 3 HOH A 56 966 137 HOH HOH . M 3 HOH A 57 967 144 HOH HOH . M 3 HOH A 58 968 158 HOH HOH . M 3 HOH A 59 969 161 HOH HOH . M 3 HOH A 60 970 170 HOH HOH . M 3 HOH A 61 971 186 HOH HOH . M 3 HOH A 62 972 201 HOH HOH . M 3 HOH A 63 973 219 HOH HOH . M 3 HOH A 64 974 221 HOH HOH . M 3 HOH A 65 975 223 HOH HOH . M 3 HOH A 66 976 225 HOH HOH . M 3 HOH A 67 977 234 HOH HOH . M 3 HOH A 68 978 235 HOH HOH . M 3 HOH A 69 979 243 HOH HOH . M 3 HOH A 70 980 265 HOH HOH . M 3 HOH A 71 981 272 HOH HOH . M 3 HOH A 72 982 273 HOH HOH . M 3 HOH A 73 983 282 HOH HOH . M 3 HOH A 74 984 286 HOH HOH . M 3 HOH A 75 985 309 HOH HOH . M 3 HOH A 76 986 312 HOH HOH . M 3 HOH A 77 987 313 HOH HOH . M 3 HOH A 78 988 315 HOH HOH . M 3 HOH A 79 989 316 HOH HOH . M 3 HOH A 80 990 317 HOH HOH . M 3 HOH A 81 991 319 HOH HOH . M 3 HOH A 82 992 320 HOH HOH . M 3 HOH A 83 993 333 HOH HOH . M 3 HOH A 84 994 381 HOH HOH . M 3 HOH A 85 995 463 HOH HOH . M 3 HOH A 86 996 5 HOH HOH . N 3 HOH B 1 995 2 HOH HOH . N 3 HOH B 2 996 30 HOH HOH . N 3 HOH B 3 997 121 HOH HOH . N 3 HOH B 4 998 168 HOH HOH . N 3 HOH B 5 999 228 HOH HOH . N 3 HOH B 6 1000 262 HOH HOH . N 3 HOH B 7 1001 263 HOH HOH . N 3 HOH B 8 1002 310 HOH HOH . N 3 HOH B 9 1003 311 HOH HOH . N 3 HOH B 10 1004 314 HOH HOH . N 3 HOH B 11 1005 318 HOH HOH . N 3 HOH B 12 1006 423 HOH HOH . N 3 HOH B 13 1007 437 HOH HOH . N 3 HOH B 14 1008 2 HOH HOH . N 3 HOH B 15 1009 4 HOH HOH . N 3 HOH B 16 1010 6 HOH HOH . N 3 HOH B 17 1011 7 HOH HOH . N 3 HOH B 18 1012 10 HOH HOH . N 3 HOH B 19 1013 12 HOH HOH . N 3 HOH B 20 1014 13 HOH HOH . N 3 HOH B 21 1015 15 HOH HOH . N 3 HOH B 22 1016 16 HOH HOH . N 3 HOH B 23 1017 17 HOH HOH . N 3 HOH B 24 1018 19 HOH HOH . N 3 HOH B 25 1019 20 HOH HOH . N 3 HOH B 26 1020 21 HOH HOH . N 3 HOH B 27 1021 23 HOH HOH . N 3 HOH B 28 1022 25 HOH HOH . N 3 HOH B 29 1023 26 HOH HOH . N 3 HOH B 30 1024 32 HOH HOH . N 3 HOH B 31 1025 33 HOH HOH . N 3 HOH B 32 1026 34 HOH HOH . N 3 HOH B 33 1027 39 HOH HOH . N 3 HOH B 34 1028 42 HOH HOH . N 3 HOH B 35 1029 43 HOH HOH . N 3 HOH B 36 1030 44 HOH HOH . N 3 HOH B 37 1031 51 HOH HOH . N 3 HOH B 38 1032 54 HOH HOH . N 3 HOH B 39 1033 56 HOH HOH . N 3 HOH B 40 1034 58 HOH HOH . N 3 HOH B 41 1035 60 HOH HOH . N 3 HOH B 42 1036 62 HOH HOH . N 3 HOH B 43 1037 63 HOH HOH . N 3 HOH B 44 1038 64 HOH HOH . N 3 HOH B 45 1039 67 HOH HOH . N 3 HOH B 46 1040 68 HOH HOH . N 3 HOH B 47 1041 69 HOH HOH . N 3 HOH B 48 1042 72 HOH HOH . N 3 HOH B 49 1043 73 HOH HOH . N 3 HOH B 50 1044 78 HOH HOH . N 3 HOH B 51 1045 82 HOH HOH . N 3 HOH B 52 1046 90 HOH HOH . N 3 HOH B 53 1047 108 HOH HOH . N 3 HOH B 54 1048 112 HOH HOH . N 3 HOH B 55 1049 115 HOH HOH . N 3 HOH B 56 1050 123 HOH HOH . N 3 HOH B 57 1051 124 HOH HOH . N 3 HOH B 58 1052 129 HOH HOH . N 3 HOH B 59 1053 131 HOH HOH . N 3 HOH B 60 1054 142 HOH HOH . N 3 HOH B 61 1055 143 HOH HOH . N 3 HOH B 62 1056 144 HOH HOH . N 3 HOH B 63 1057 145 HOH HOH . N 3 HOH B 64 1058 148 HOH HOH . N 3 HOH B 65 1059 149 HOH HOH . N 3 HOH B 66 1060 150 HOH HOH . N 3 HOH B 67 1061 151 HOH HOH . N 3 HOH B 68 1062 156 HOH HOH . N 3 HOH B 69 1063 158 HOH HOH . N 3 HOH B 70 1064 159 HOH HOH . N 3 HOH B 71 1065 160 HOH HOH . N 3 HOH B 72 1066 162 HOH HOH . N 3 HOH B 73 1067 163 HOH HOH . N 3 HOH B 74 1068 166 HOH HOH . N 3 HOH B 75 1069 167 HOH HOH . N 3 HOH B 76 1070 173 HOH HOH . N 3 HOH B 77 1071 178 HOH HOH . N 3 HOH B 78 1072 180 HOH HOH . N 3 HOH B 79 1073 186 HOH HOH . N 3 HOH B 80 1074 187 HOH HOH . N 3 HOH B 81 1075 189 HOH HOH . N 3 HOH B 82 1076 193 HOH HOH . N 3 HOH B 83 1077 198 HOH HOH . N 3 HOH B 84 1078 200 HOH HOH . N 3 HOH B 85 1079 214 HOH HOH . N 3 HOH B 86 1080 215 HOH HOH . N 3 HOH B 87 1081 216 HOH HOH . N 3 HOH B 88 1082 238 HOH HOH . N 3 HOH B 89 1083 241 HOH HOH . N 3 HOH B 90 1084 243 HOH HOH . N 3 HOH B 91 1085 282 HOH HOH . N 3 HOH B 92 1086 293 HOH HOH . N 3 HOH B 93 1087 294 HOH HOH . N 3 HOH B 94 1088 304 HOH HOH . N 3 HOH B 95 1089 305 HOH HOH . N 3 HOH B 96 1090 315 HOH HOH . N 3 HOH B 97 1091 318 HOH HOH . N 3 HOH B 98 1092 319 HOH HOH . N 3 HOH B 99 1093 324 HOH HOH . N 3 HOH B 100 1094 325 HOH HOH . N 3 HOH B 101 1095 326 HOH HOH . N 3 HOH B 102 1096 328 HOH HOH . N 3 HOH B 103 1097 329 HOH HOH . N 3 HOH B 104 1098 330 HOH HOH . N 3 HOH B 105 1099 331 HOH HOH . N 3 HOH B 106 1100 332 HOH HOH . N 3 HOH B 107 1101 333 HOH HOH . N 3 HOH B 108 1102 334 HOH HOH . N 3 HOH B 109 1103 335 HOH HOH . N 3 HOH B 110 1104 364 HOH HOH . N 3 HOH B 111 1105 423 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 2 -67.609 -11.844 13.524 1 81.21 ? S DMS 907 B 1 HETATM 2 O O DMS . . . G 2 -67.905 -10.426 13.828 1 80.22 ? O DMS 907 B 1 HETATM 3 C C1 DMS . . . G 2 -68.241 -12.188 11.928 1 80.37 ? C1 DMS 907 B 1 HETATM 4 C C2 DMS . . . G 2 -65.86 -12.066 13.304 1 80.21 ? C2 DMS 907 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #