data_3EV5 # _model_server_result.job_id '_jRhqBCn3yNmko5ZlhXuKg' _model_server_result.datetime_utc '2024-12-03 15:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ev5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":905}' # _entry.id 3EV5 # _exptl.entry_id 3EV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trimethylamine oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.39 _cell.angle_gamma 90 _cell.entry_id 3EV5 _cell.length_a 100.042 _cell.length_b 32.773 _cell.length_c 72.807 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C3 H9 N O' _chem_comp.formula_weight 75.11 _chem_comp.id TMO _chem_comp.mon_nstd_flag . _chem_comp.name 'trimethylamine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAC TMO sing 306 n n CAA HAA TMO sing 307 n n CAA HAAA TMO sing 308 n n CAA HAAB TMO sing 309 n n NAC CAD TMO sing 310 n n NAC CAB TMO sing 311 n n NAC OAE TMO sing 312 n n CAD HAD TMO sing 313 n n CAD HADA TMO sing 314 n n CAD HADB TMO sing 315 n n CAB HAB TMO sing 316 n n CAB HABA TMO sing 317 n n CAB HABB TMO sing 318 n n # _atom_sites.entry_id 3EV5 _atom_sites.fract_transf_matrix[1][1] 0.009996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TMO A 1 905 905 TMO TMO . D 2 TMO A 1 906 906 TMO TMO . E 3 HOH A 1 907 2 HOH HOH . E 3 HOH A 2 908 3 HOH HOH . E 3 HOH A 3 909 4 HOH HOH . E 3 HOH A 4 910 5 HOH HOH . E 3 HOH A 5 911 6 HOH HOH . E 3 HOH A 6 912 7 HOH HOH . E 3 HOH A 7 913 8 HOH HOH . E 3 HOH A 8 914 9 HOH HOH . E 3 HOH A 9 915 10 HOH HOH . E 3 HOH A 10 916 12 HOH HOH . E 3 HOH A 11 917 13 HOH HOH . E 3 HOH A 12 918 14 HOH HOH . E 3 HOH A 13 919 15 HOH HOH . E 3 HOH A 14 920 16 HOH HOH . E 3 HOH A 15 921 17 HOH HOH . E 3 HOH A 16 922 19 HOH HOH . E 3 HOH A 17 923 20 HOH HOH . E 3 HOH A 18 924 21 HOH HOH . E 3 HOH A 19 925 22 HOH HOH . E 3 HOH A 20 926 23 HOH HOH . E 3 HOH A 21 927 24 HOH HOH . E 3 HOH A 22 928 26 HOH HOH . E 3 HOH A 23 929 27 HOH HOH . E 3 HOH A 24 930 34 HOH HOH . E 3 HOH A 25 931 35 HOH HOH . E 3 HOH A 26 932 37 HOH HOH . E 3 HOH A 27 933 39 HOH HOH . E 3 HOH A 28 934 40 HOH HOH . E 3 HOH A 29 935 41 HOH HOH . E 3 HOH A 30 936 43 HOH HOH . E 3 HOH A 31 937 54 HOH HOH . E 3 HOH A 32 938 55 HOH HOH . E 3 HOH A 33 939 57 HOH HOH . E 3 HOH A 34 940 58 HOH HOH . E 3 HOH A 35 941 60 HOH HOH . E 3 HOH A 36 942 64 HOH HOH . E 3 HOH A 37 943 65 HOH HOH . E 3 HOH A 38 944 66 HOH HOH . E 3 HOH A 39 945 67 HOH HOH . E 3 HOH A 40 946 69 HOH HOH . E 3 HOH A 41 947 72 HOH HOH . E 3 HOH A 42 948 73 HOH HOH . E 3 HOH A 43 949 78 HOH HOH . E 3 HOH A 44 950 80 HOH HOH . E 3 HOH A 45 951 82 HOH HOH . E 3 HOH A 46 952 88 HOH HOH . E 3 HOH A 47 953 90 HOH HOH . E 3 HOH A 48 954 96 HOH HOH . E 3 HOH A 49 955 101 HOH HOH . E 3 HOH A 50 956 103 HOH HOH . E 3 HOH A 51 957 108 HOH HOH . E 3 HOH A 52 958 111 HOH HOH . E 3 HOH A 53 959 119 HOH HOH . E 3 HOH A 54 960 121 HOH HOH . E 3 HOH A 55 961 123 HOH HOH . E 3 HOH A 56 962 124 HOH HOH . E 3 HOH A 57 963 125 HOH HOH . E 3 HOH A 58 964 126 HOH HOH . E 3 HOH A 59 965 128 HOH HOH . E 3 HOH A 60 966 129 HOH HOH . E 3 HOH A 61 967 131 HOH HOH . E 3 HOH A 62 968 136 HOH HOH . E 3 HOH A 63 969 137 HOH HOH . E 3 HOH A 64 970 140 HOH HOH . E 3 HOH A 65 971 142 HOH HOH . E 3 HOH A 66 972 144 HOH HOH . E 3 HOH A 67 973 158 HOH HOH . E 3 HOH A 68 974 166 HOH HOH . E 3 HOH A 69 975 168 HOH HOH . E 3 HOH A 70 976 175 HOH HOH . E 3 HOH A 71 977 176 HOH HOH . E 3 HOH A 72 978 181 HOH HOH . E 3 HOH A 73 979 216 HOH HOH . E 3 HOH A 74 980 223 HOH HOH . E 3 HOH A 75 981 239 HOH HOH . E 3 HOH A 76 982 243 HOH HOH . E 3 HOH A 77 983 249 HOH HOH . E 3 HOH A 78 984 263 HOH HOH . E 3 HOH A 79 985 271 HOH HOH . E 3 HOH A 80 986 272 HOH HOH . E 3 HOH A 81 987 275 HOH HOH . E 3 HOH A 82 988 276 HOH HOH . E 3 HOH A 83 989 319 HOH HOH . E 3 HOH A 84 990 333 HOH HOH . E 3 HOH A 85 991 354 HOH HOH . E 3 HOH A 86 992 382 HOH HOH . E 3 HOH A 87 993 395 HOH HOH . E 3 HOH A 88 994 410 HOH HOH . E 3 HOH A 89 995 418 HOH HOH . E 3 HOH A 90 996 463 HOH HOH . E 3 HOH A 91 997 466 HOH HOH . E 3 HOH A 92 998 467 HOH HOH . E 3 HOH A 93 999 468 HOH HOH . E 3 HOH A 94 1000 469 HOH HOH . E 3 HOH A 95 1001 470 HOH HOH . E 3 HOH A 96 1002 218 HOH HOH . F 3 HOH B 1 125 11 HOH HOH . F 3 HOH B 2 126 28 HOH HOH . F 3 HOH B 3 127 30 HOH HOH . F 3 HOH B 4 128 81 HOH HOH . F 3 HOH B 5 129 318 HOH HOH . F 3 HOH B 6 130 349 HOH HOH . F 3 HOH B 7 131 404 HOH HOH . F 3 HOH B 8 132 423 HOH HOH . F 3 HOH B 9 133 2 HOH HOH . F 3 HOH B 10 134 4 HOH HOH . F 3 HOH B 11 135 6 HOH HOH . F 3 HOH B 12 136 7 HOH HOH . F 3 HOH B 13 137 10 HOH HOH . F 3 HOH B 14 138 13 HOH HOH . F 3 HOH B 15 139 14 HOH HOH . F 3 HOH B 16 140 15 HOH HOH . F 3 HOH B 17 141 16 HOH HOH . F 3 HOH B 18 142 17 HOH HOH . F 3 HOH B 19 143 19 HOH HOH . F 3 HOH B 20 144 20 HOH HOH . F 3 HOH B 21 145 21 HOH HOH . F 3 HOH B 22 146 22 HOH HOH . F 3 HOH B 23 147 23 HOH HOH . F 3 HOH B 24 148 26 HOH HOH . F 3 HOH B 25 149 27 HOH HOH . F 3 HOH B 26 150 32 HOH HOH . F 3 HOH B 27 151 34 HOH HOH . F 3 HOH B 28 152 39 HOH HOH . F 3 HOH B 29 153 41 HOH HOH . F 3 HOH B 30 154 43 HOH HOH . F 3 HOH B 31 155 44 HOH HOH . F 3 HOH B 32 156 51 HOH HOH . F 3 HOH B 33 157 52 HOH HOH . F 3 HOH B 34 158 54 HOH HOH . F 3 HOH B 35 159 56 HOH HOH . F 3 HOH B 36 160 60 HOH HOH . F 3 HOH B 37 161 62 HOH HOH . F 3 HOH B 38 162 63 HOH HOH . F 3 HOH B 39 163 64 HOH HOH . F 3 HOH B 40 164 67 HOH HOH . F 3 HOH B 41 165 68 HOH HOH . F 3 HOH B 42 166 69 HOH HOH . F 3 HOH B 43 167 73 HOH HOH . F 3 HOH B 44 168 75 HOH HOH . F 3 HOH B 45 169 76 HOH HOH . F 3 HOH B 46 170 78 HOH HOH . F 3 HOH B 47 171 82 HOH HOH . F 3 HOH B 48 172 84 HOH HOH . F 3 HOH B 49 173 90 HOH HOH . F 3 HOH B 50 174 100 HOH HOH . F 3 HOH B 51 175 108 HOH HOH . F 3 HOH B 52 176 110 HOH HOH . F 3 HOH B 53 177 112 HOH HOH . F 3 HOH B 54 178 115 HOH HOH . F 3 HOH B 55 179 124 HOH HOH . F 3 HOH B 56 180 129 HOH HOH . F 3 HOH B 57 181 131 HOH HOH . F 3 HOH B 58 182 140 HOH HOH . F 3 HOH B 59 183 142 HOH HOH . F 3 HOH B 60 184 143 HOH HOH . F 3 HOH B 61 185 145 HOH HOH . F 3 HOH B 62 186 148 HOH HOH . F 3 HOH B 63 187 149 HOH HOH . F 3 HOH B 64 188 150 HOH HOH . F 3 HOH B 65 189 151 HOH HOH . F 3 HOH B 66 190 153 HOH HOH . F 3 HOH B 67 191 156 HOH HOH . F 3 HOH B 68 192 158 HOH HOH . F 3 HOH B 69 193 162 HOH HOH . F 3 HOH B 70 194 163 HOH HOH . F 3 HOH B 71 195 166 HOH HOH . F 3 HOH B 72 196 167 HOH HOH . F 3 HOH B 73 197 170 HOH HOH . F 3 HOH B 74 198 173 HOH HOH . F 3 HOH B 75 199 175 HOH HOH . F 3 HOH B 76 200 176 HOH HOH . F 3 HOH B 77 201 179 HOH HOH . F 3 HOH B 78 202 181 HOH HOH . F 3 HOH B 79 203 183 HOH HOH . F 3 HOH B 80 204 187 HOH HOH . F 3 HOH B 81 205 195 HOH HOH . F 3 HOH B 82 206 198 HOH HOH . F 3 HOH B 83 207 200 HOH HOH . F 3 HOH B 84 208 213 HOH HOH . F 3 HOH B 85 209 215 HOH HOH . F 3 HOH B 86 210 216 HOH HOH . F 3 HOH B 87 211 229 HOH HOH . F 3 HOH B 88 212 238 HOH HOH . F 3 HOH B 89 213 243 HOH HOH . F 3 HOH B 90 214 251 HOH HOH . F 3 HOH B 91 215 257 HOH HOH . F 3 HOH B 92 216 282 HOH HOH . F 3 HOH B 93 217 292 HOH HOH . F 3 HOH B 94 218 293 HOH HOH . F 3 HOH B 95 219 294 HOH HOH . F 3 HOH B 96 220 299 HOH HOH . F 3 HOH B 97 221 305 HOH HOH . F 3 HOH B 98 222 318 HOH HOH . F 3 HOH B 99 223 364 HOH HOH . F 3 HOH B 100 224 381 HOH HOH . F 3 HOH B 101 225 385 HOH HOH . F 3 HOH B 102 226 386 HOH HOH . F 3 HOH B 103 227 391 HOH HOH . F 3 HOH B 104 228 393 HOH HOH . F 3 HOH B 105 229 406 HOH HOH . F 3 HOH B 106 230 417 HOH HOH . F 3 HOH B 107 231 423 HOH HOH . F 3 HOH B 108 232 463 HOH HOH . F 3 HOH B 109 233 474 HOH HOH . F 3 HOH B 110 234 475 HOH HOH . F 3 HOH B 111 235 476 HOH HOH . F 3 HOH B 112 236 477 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA TMO . . . C 2 -81.412 -3.086 6.268 1 52.2 ? CAA TMO 905 A 1 HETATM 2 N NAC TMO . . . C 2 -80.485 -3.29 5.147 1 53.29 ? NAC TMO 905 A 1 HETATM 3 C CAD TMO . . . C 2 -79.272 -3.964 5.631 1 53.2 ? CAD TMO 905 A 1 HETATM 4 C CAB TMO . . . C 2 -81.132 -4.124 4.122 1 52.78 ? CAB TMO 905 A 1 HETATM 5 O OAE TMO . . . C 2 -80.13 -1.997 4.569 1 53.22 ? OAE TMO 905 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #