data_3EVA # _model_server_result.job_id 3oIY_vU98CZHY6fjX_caXQ _model_server_result.datetime_utc '2024-12-06 01:02:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 3EVA # _exptl.entry_id 3EVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EVA _cell.length_a 105.316 _cell.length_b 105.316 _cell.length_c 51.343 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 3EVA _atom_sites.fract_transf_matrix[1][1] 0.009495 _atom_sites.fract_transf_matrix[1][2] 0.005482 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 901 901 SAH SAH . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 511 511 HOH HOH . C 3 HOH A 12 512 512 HOH HOH . C 3 HOH A 13 513 513 HOH HOH . C 3 HOH A 14 514 514 HOH HOH . C 3 HOH A 15 515 515 HOH HOH . C 3 HOH A 16 516 516 HOH HOH . C 3 HOH A 17 517 517 HOH HOH . C 3 HOH A 18 518 518 HOH HOH . C 3 HOH A 19 519 519 HOH HOH . C 3 HOH A 20 520 520 HOH HOH . C 3 HOH A 21 521 521 HOH HOH . C 3 HOH A 22 522 522 HOH HOH . C 3 HOH A 23 523 523 HOH HOH . C 3 HOH A 24 524 524 HOH HOH . C 3 HOH A 25 525 525 HOH HOH . C 3 HOH A 26 526 526 HOH HOH . C 3 HOH A 27 527 527 HOH HOH . C 3 HOH A 28 528 528 HOH HOH . C 3 HOH A 29 529 529 HOH HOH . C 3 HOH A 30 530 530 HOH HOH . C 3 HOH A 31 531 531 HOH HOH . C 3 HOH A 32 532 532 HOH HOH . C 3 HOH A 33 533 533 HOH HOH . C 3 HOH A 34 534 534 HOH HOH . C 3 HOH A 35 535 535 HOH HOH . C 3 HOH A 36 536 536 HOH HOH . C 3 HOH A 37 537 537 HOH HOH . C 3 HOH A 38 538 538 HOH HOH . C 3 HOH A 39 539 539 HOH HOH . C 3 HOH A 40 540 540 HOH HOH . C 3 HOH A 41 541 541 HOH HOH . C 3 HOH A 42 542 542 HOH HOH . C 3 HOH A 43 543 543 HOH HOH . C 3 HOH A 44 545 545 HOH HOH . C 3 HOH A 45 546 546 HOH HOH . C 3 HOH A 46 547 547 HOH HOH . C 3 HOH A 47 548 548 HOH HOH . C 3 HOH A 48 549 549 HOH HOH . C 3 HOH A 49 550 550 HOH HOH . C 3 HOH A 50 551 551 HOH HOH . C 3 HOH A 51 552 552 HOH HOH . C 3 HOH A 52 553 553 HOH HOH . C 3 HOH A 53 554 554 HOH HOH . C 3 HOH A 54 555 555 HOH HOH . C 3 HOH A 55 556 556 HOH HOH . C 3 HOH A 56 557 557 HOH HOH . C 3 HOH A 57 558 558 HOH HOH . C 3 HOH A 58 559 559 HOH HOH . C 3 HOH A 59 560 560 HOH HOH . C 3 HOH A 60 561 561 HOH HOH . C 3 HOH A 61 562 562 HOH HOH . C 3 HOH A 62 563 563 HOH HOH . C 3 HOH A 63 564 564 HOH HOH . C 3 HOH A 64 565 565 HOH HOH . C 3 HOH A 65 566 566 HOH HOH . C 3 HOH A 66 567 567 HOH HOH . C 3 HOH A 67 568 568 HOH HOH . C 3 HOH A 68 569 569 HOH HOH . C 3 HOH A 69 570 570 HOH HOH . C 3 HOH A 70 571 571 HOH HOH . C 3 HOH A 71 572 572 HOH HOH . C 3 HOH A 72 573 573 HOH HOH . C 3 HOH A 73 574 574 HOH HOH . C 3 HOH A 74 575 575 HOH HOH . C 3 HOH A 75 576 576 HOH HOH . C 3 HOH A 76 577 577 HOH HOH . C 3 HOH A 77 578 578 HOH HOH . C 3 HOH A 78 579 579 HOH HOH . C 3 HOH A 79 580 580 HOH HOH . C 3 HOH A 80 581 581 HOH HOH . C 3 HOH A 81 582 582 HOH HOH . C 3 HOH A 82 583 583 HOH HOH . C 3 HOH A 83 584 584 HOH HOH . C 3 HOH A 84 585 585 HOH HOH . C 3 HOH A 85 586 586 HOH HOH . C 3 HOH A 86 587 587 HOH HOH . C 3 HOH A 87 588 588 HOH HOH . C 3 HOH A 88 589 589 HOH HOH . C 3 HOH A 89 590 590 HOH HOH . C 3 HOH A 90 591 591 HOH HOH . C 3 HOH A 91 592 592 HOH HOH . C 3 HOH A 92 593 593 HOH HOH . C 3 HOH A 93 594 594 HOH HOH . C 3 HOH A 94 595 595 HOH HOH . C 3 HOH A 95 596 596 HOH HOH . C 3 HOH A 96 597 597 HOH HOH . C 3 HOH A 97 598 598 HOH HOH . C 3 HOH A 98 599 599 HOH HOH . C 3 HOH A 99 600 600 HOH HOH . C 3 HOH A 100 601 601 HOH HOH . C 3 HOH A 101 602 602 HOH HOH . C 3 HOH A 102 603 603 HOH HOH . C 3 HOH A 103 604 604 HOH HOH . C 3 HOH A 104 605 605 HOH HOH . C 3 HOH A 105 606 606 HOH HOH . C 3 HOH A 106 607 607 HOH HOH . C 3 HOH A 107 608 608 HOH HOH . C 3 HOH A 108 609 609 HOH HOH . C 3 HOH A 109 610 610 HOH HOH . C 3 HOH A 110 611 611 HOH HOH . C 3 HOH A 111 612 612 HOH HOH . C 3 HOH A 112 613 613 HOH HOH . C 3 HOH A 113 614 614 HOH HOH . C 3 HOH A 114 615 615 HOH HOH . C 3 HOH A 115 616 616 HOH HOH . C 3 HOH A 116 617 617 HOH HOH . C 3 HOH A 117 618 618 HOH HOH . C 3 HOH A 118 619 619 HOH HOH . C 3 HOH A 119 620 620 HOH HOH . C 3 HOH A 120 621 621 HOH HOH . C 3 HOH A 121 622 622 HOH HOH . C 3 HOH A 122 623 623 HOH HOH . C 3 HOH A 123 624 624 HOH HOH . C 3 HOH A 124 625 625 HOH HOH . C 3 HOH A 125 626 626 HOH HOH . C 3 HOH A 126 627 627 HOH HOH . C 3 HOH A 127 628 628 HOH HOH . C 3 HOH A 128 629 629 HOH HOH . C 3 HOH A 129 630 630 HOH HOH . C 3 HOH A 130 631 631 HOH HOH . C 3 HOH A 131 632 632 HOH HOH . C 3 HOH A 132 633 633 HOH HOH . C 3 HOH A 133 634 634 HOH HOH . C 3 HOH A 134 635 635 HOH HOH . C 3 HOH A 135 636 636 HOH HOH . C 3 HOH A 136 637 637 HOH HOH . C 3 HOH A 137 638 638 HOH HOH . C 3 HOH A 138 639 639 HOH HOH . C 3 HOH A 139 640 640 HOH HOH . C 3 HOH A 140 641 641 HOH HOH . C 3 HOH A 141 642 642 HOH HOH . C 3 HOH A 142 643 643 HOH HOH . C 3 HOH A 143 644 644 HOH HOH . C 3 HOH A 144 645 645 HOH HOH . C 3 HOH A 145 646 646 HOH HOH . C 3 HOH A 146 647 647 HOH HOH . C 3 HOH A 147 648 648 HOH HOH . C 3 HOH A 148 649 649 HOH HOH . C 3 HOH A 149 650 650 HOH HOH . C 3 HOH A 150 651 651 HOH HOH . C 3 HOH A 151 652 652 HOH HOH . C 3 HOH A 152 653 653 HOH HOH . C 3 HOH A 153 654 654 HOH HOH . C 3 HOH A 154 655 655 HOH HOH . C 3 HOH A 155 656 656 HOH HOH . C 3 HOH A 156 657 657 HOH HOH . C 3 HOH A 157 658 658 HOH HOH . C 3 HOH A 158 659 659 HOH HOH . C 3 HOH A 159 660 660 HOH HOH . C 3 HOH A 160 661 661 HOH HOH . C 3 HOH A 161 662 662 HOH HOH . C 3 HOH A 162 663 663 HOH HOH . C 3 HOH A 163 664 664 HOH HOH . C 3 HOH A 164 665 665 HOH HOH . C 3 HOH A 165 666 666 HOH HOH . C 3 HOH A 166 667 667 HOH HOH . C 3 HOH A 167 668 668 HOH HOH . C 3 HOH A 168 669 669 HOH HOH . C 3 HOH A 169 670 670 HOH HOH . C 3 HOH A 170 671 671 HOH HOH . C 3 HOH A 171 672 672 HOH HOH . C 3 HOH A 172 673 673 HOH HOH . C 3 HOH A 173 674 674 HOH HOH . C 3 HOH A 174 675 675 HOH HOH . C 3 HOH A 175 676 676 HOH HOH . C 3 HOH A 176 677 677 HOH HOH . C 3 HOH A 177 678 678 HOH HOH . C 3 HOH A 178 679 679 HOH HOH . C 3 HOH A 179 680 680 HOH HOH . C 3 HOH A 180 681 681 HOH HOH . C 3 HOH A 181 682 682 HOH HOH . C 3 HOH A 182 683 683 HOH HOH . C 3 HOH A 183 684 684 HOH HOH . C 3 HOH A 184 685 685 HOH HOH . C 3 HOH A 185 686 686 HOH HOH . C 3 HOH A 186 687 687 HOH HOH . C 3 HOH A 187 688 688 HOH HOH . C 3 HOH A 188 689 689 HOH HOH . C 3 HOH A 189 690 690 HOH HOH . C 3 HOH A 190 691 691 HOH HOH . C 3 HOH A 191 692 692 HOH HOH . C 3 HOH A 192 693 693 HOH HOH . C 3 HOH A 193 694 694 HOH HOH . C 3 HOH A 194 695 695 HOH HOH . C 3 HOH A 195 696 696 HOH HOH . C 3 HOH A 196 697 697 HOH HOH . C 3 HOH A 197 698 698 HOH HOH . C 3 HOH A 198 699 699 HOH HOH . C 3 HOH A 199 700 700 HOH HOH . C 3 HOH A 200 701 701 HOH HOH . C 3 HOH A 201 702 702 HOH HOH . C 3 HOH A 202 703 703 HOH HOH . C 3 HOH A 203 704 704 HOH HOH . C 3 HOH A 204 705 705 HOH HOH . C 3 HOH A 205 706 706 HOH HOH . C 3 HOH A 206 707 707 HOH HOH . C 3 HOH A 207 708 708 HOH HOH . C 3 HOH A 208 709 709 HOH HOH . C 3 HOH A 209 710 710 HOH HOH . C 3 HOH A 210 711 711 HOH HOH . C 3 HOH A 211 712 712 HOH HOH . C 3 HOH A 212 713 713 HOH HOH . C 3 HOH A 213 714 714 HOH HOH . C 3 HOH A 214 715 715 HOH HOH . C 3 HOH A 215 716 716 HOH HOH . C 3 HOH A 216 717 717 HOH HOH . C 3 HOH A 217 718 718 HOH HOH . C 3 HOH A 218 719 719 HOH HOH . C 3 HOH A 219 720 720 HOH HOH . C 3 HOH A 220 721 721 HOH HOH . C 3 HOH A 221 722 722 HOH HOH . C 3 HOH A 222 723 723 HOH HOH . C 3 HOH A 223 724 724 HOH HOH . C 3 HOH A 224 725 725 HOH HOH . C 3 HOH A 225 726 726 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 24.632 30.029 -26.912 1 14.38 ? N SAH 901 A 1 HETATM 2 C CA SAH . . . B 2 25.711 31.021 -27.034 1 15.77 ? CA SAH 901 A 1 HETATM 3 C CB SAH . . . B 2 26.482 30.793 -28.335 1 18.87 ? CB SAH 901 A 1 HETATM 4 C CG SAH . . . B 2 27.323 29.518 -28.256 1 23.42 ? CG SAH 901 A 1 HETATM 5 S SD SAH . . . B 2 28.359 29.246 -29.74 1 26.4 ? SD SAH 901 A 1 HETATM 6 C C SAH . . . B 2 25.106 32.425 -27.052 1 14.93 ? C SAH 901 A 1 HETATM 7 O O SAH . . . B 2 25.905 33.379 -27.181 1 14.15 ? O SAH 901 A 1 HETATM 8 O OXT SAH . . . B 2 23.867 32.516 -26.927 1 13.8 ? OXT SAH 901 A 1 HETATM 9 C C5' SAH . . . B 2 29.314 27.788 -29.184 1 20.94 ? C5' SAH 901 A 1 HETATM 10 C C4' SAH . . . B 2 30.433 28.144 -28.203 1 19.04 ? C4' SAH 901 A 1 HETATM 11 O O4' SAH . . . B 2 30.972 26.914 -27.69 1 17.34 ? O4' SAH 901 A 1 HETATM 12 C C3' SAH . . . B 2 31.583 28.875 -28.904 1 20.16 ? C3' SAH 901 A 1 HETATM 13 O O3' SAH . . . B 2 32.029 29.969 -28.099 1 22.72 ? O3' SAH 901 A 1 HETATM 14 C C2' SAH . . . B 2 32.665 27.797 -28.978 1 18.84 ? C2' SAH 901 A 1 HETATM 15 O O2' SAH . . . B 2 33.952 28.417 -28.917 1 22.48 ? O2' SAH 901 A 1 HETATM 16 C C1' SAH . . . B 2 32.396 27.086 -27.652 1 18.7 ? C1' SAH 901 A 1 HETATM 17 N N9 SAH . . . B 2 33.04 25.754 -27.586 1 16.93 ? N9 SAH 901 A 1 HETATM 18 C C8 SAH . . . B 2 33.257 24.929 -28.609 1 18 ? C8 SAH 901 A 1 HETATM 19 N N7 SAH . . . B 2 33.809 23.802 -28.164 1 17.54 ? N7 SAH 901 A 1 HETATM 20 C C5 SAH . . . B 2 33.947 23.908 -26.847 1 15.67 ? C5 SAH 901 A 1 HETATM 21 C C6 SAH . . . B 2 34.441 23.073 -25.853 1 15.14 ? C6 SAH 901 A 1 HETATM 22 N N6 SAH . . . B 2 34.929 21.874 -26.156 1 17.04 ? N6 SAH 901 A 1 HETATM 23 N N1 SAH . . . B 2 34.425 23.501 -24.582 1 14.48 ? N1 SAH 901 A 1 HETATM 24 C C2 SAH . . . B 2 33.954 24.694 -24.267 1 13.89 ? C2 SAH 901 A 1 HETATM 25 N N3 SAH . . . B 2 33.478 25.515 -25.186 1 14.63 ? N3 SAH 901 A 1 HETATM 26 C C4 SAH . . . B 2 33.459 25.154 -26.477 1 15.75 ? C4 SAH 901 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #