data_3EVC # _model_server_result.job_id zEPYUctkDhM1JMf1_fU0yA _model_server_result.datetime_utc '2024-11-24 22:56:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3evc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 3EVC # _exptl.entry_id 3EVC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EVC _cell.length_a 104.468 _cell.length_b 104.468 _cell.length_c 51.707 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 3EVC _atom_sites.fract_transf_matrix[1][1] 0.009572 _atom_sites.fract_transf_matrix[1][2] 0.005527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 901 901 SAH SAH . C 3 GTP A 1 902 1001 GTP GTP . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 506 HOH HOH . D 4 HOH A 7 507 507 HOH HOH . D 4 HOH A 8 508 508 HOH HOH . D 4 HOH A 9 509 509 HOH HOH . D 4 HOH A 10 510 510 HOH HOH . D 4 HOH A 11 511 511 HOH HOH . D 4 HOH A 12 512 512 HOH HOH . D 4 HOH A 13 513 513 HOH HOH . D 4 HOH A 14 514 514 HOH HOH . D 4 HOH A 15 515 515 HOH HOH . D 4 HOH A 16 516 516 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 518 HOH HOH . D 4 HOH A 19 519 519 HOH HOH . D 4 HOH A 20 520 520 HOH HOH . D 4 HOH A 21 521 521 HOH HOH . D 4 HOH A 22 522 522 HOH HOH . D 4 HOH A 23 523 523 HOH HOH . D 4 HOH A 24 524 524 HOH HOH . D 4 HOH A 25 525 525 HOH HOH . D 4 HOH A 26 526 526 HOH HOH . D 4 HOH A 27 527 527 HOH HOH . D 4 HOH A 28 528 528 HOH HOH . D 4 HOH A 29 529 529 HOH HOH . D 4 HOH A 30 530 530 HOH HOH . D 4 HOH A 31 531 531 HOH HOH . D 4 HOH A 32 532 532 HOH HOH . D 4 HOH A 33 533 533 HOH HOH . D 4 HOH A 34 534 534 HOH HOH . D 4 HOH A 35 535 535 HOH HOH . D 4 HOH A 36 536 536 HOH HOH . D 4 HOH A 37 537 537 HOH HOH . D 4 HOH A 38 538 538 HOH HOH . D 4 HOH A 39 539 539 HOH HOH . D 4 HOH A 40 540 540 HOH HOH . D 4 HOH A 41 541 541 HOH HOH . D 4 HOH A 42 542 542 HOH HOH . D 4 HOH A 43 543 543 HOH HOH . D 4 HOH A 44 544 544 HOH HOH . D 4 HOH A 45 545 545 HOH HOH . D 4 HOH A 46 546 546 HOH HOH . D 4 HOH A 47 547 547 HOH HOH . D 4 HOH A 48 548 548 HOH HOH . D 4 HOH A 49 549 549 HOH HOH . D 4 HOH A 50 550 550 HOH HOH . D 4 HOH A 51 551 551 HOH HOH . D 4 HOH A 52 552 552 HOH HOH . D 4 HOH A 53 553 553 HOH HOH . D 4 HOH A 54 554 554 HOH HOH . D 4 HOH A 55 555 555 HOH HOH . D 4 HOH A 56 556 556 HOH HOH . D 4 HOH A 57 557 557 HOH HOH . D 4 HOH A 58 558 558 HOH HOH . D 4 HOH A 59 559 559 HOH HOH . D 4 HOH A 60 560 560 HOH HOH . D 4 HOH A 61 561 561 HOH HOH . D 4 HOH A 62 562 562 HOH HOH . D 4 HOH A 63 563 563 HOH HOH . D 4 HOH A 64 564 564 HOH HOH . D 4 HOH A 65 565 565 HOH HOH . D 4 HOH A 66 566 566 HOH HOH . D 4 HOH A 67 567 567 HOH HOH . D 4 HOH A 68 568 568 HOH HOH . D 4 HOH A 69 569 569 HOH HOH . D 4 HOH A 70 570 570 HOH HOH . D 4 HOH A 71 571 571 HOH HOH . D 4 HOH A 72 572 572 HOH HOH . D 4 HOH A 73 573 573 HOH HOH . D 4 HOH A 74 574 574 HOH HOH . D 4 HOH A 75 575 575 HOH HOH . D 4 HOH A 76 576 576 HOH HOH . D 4 HOH A 77 577 577 HOH HOH . D 4 HOH A 78 578 578 HOH HOH . D 4 HOH A 79 579 579 HOH HOH . D 4 HOH A 80 580 580 HOH HOH . D 4 HOH A 81 581 581 HOH HOH . D 4 HOH A 82 582 582 HOH HOH . D 4 HOH A 83 583 583 HOH HOH . D 4 HOH A 84 584 584 HOH HOH . D 4 HOH A 85 585 585 HOH HOH . D 4 HOH A 86 586 586 HOH HOH . D 4 HOH A 87 587 587 HOH HOH . D 4 HOH A 88 588 588 HOH HOH . D 4 HOH A 89 589 589 HOH HOH . D 4 HOH A 90 590 590 HOH HOH . D 4 HOH A 91 591 591 HOH HOH . D 4 HOH A 92 592 592 HOH HOH . D 4 HOH A 93 593 593 HOH HOH . D 4 HOH A 94 594 594 HOH HOH . D 4 HOH A 95 595 595 HOH HOH . D 4 HOH A 96 596 596 HOH HOH . D 4 HOH A 97 597 597 HOH HOH . D 4 HOH A 98 598 598 HOH HOH . D 4 HOH A 99 599 599 HOH HOH . D 4 HOH A 100 600 600 HOH HOH . D 4 HOH A 101 601 601 HOH HOH . D 4 HOH A 102 602 602 HOH HOH . D 4 HOH A 103 603 603 HOH HOH . D 4 HOH A 104 604 604 HOH HOH . D 4 HOH A 105 605 605 HOH HOH . D 4 HOH A 106 606 606 HOH HOH . D 4 HOH A 107 607 607 HOH HOH . D 4 HOH A 108 608 608 HOH HOH . D 4 HOH A 109 609 609 HOH HOH . D 4 HOH A 110 610 610 HOH HOH . D 4 HOH A 111 611 611 HOH HOH . D 4 HOH A 112 612 612 HOH HOH . D 4 HOH A 113 613 613 HOH HOH . D 4 HOH A 114 614 614 HOH HOH . D 4 HOH A 115 615 615 HOH HOH . D 4 HOH A 116 616 616 HOH HOH . D 4 HOH A 117 617 617 HOH HOH . D 4 HOH A 118 618 618 HOH HOH . D 4 HOH A 119 619 619 HOH HOH . D 4 HOH A 120 620 620 HOH HOH . D 4 HOH A 121 621 621 HOH HOH . D 4 HOH A 122 622 622 HOH HOH . D 4 HOH A 123 623 623 HOH HOH . D 4 HOH A 124 624 624 HOH HOH . D 4 HOH A 125 625 625 HOH HOH . D 4 HOH A 126 626 626 HOH HOH . D 4 HOH A 127 627 627 HOH HOH . D 4 HOH A 128 628 628 HOH HOH . D 4 HOH A 129 629 629 HOH HOH . D 4 HOH A 130 630 630 HOH HOH . D 4 HOH A 131 631 631 HOH HOH . D 4 HOH A 132 632 632 HOH HOH . D 4 HOH A 133 633 633 HOH HOH . D 4 HOH A 134 634 634 HOH HOH . D 4 HOH A 135 635 635 HOH HOH . D 4 HOH A 136 636 636 HOH HOH . D 4 HOH A 137 637 637 HOH HOH . D 4 HOH A 138 638 638 HOH HOH . D 4 HOH A 139 639 639 HOH HOH . D 4 HOH A 140 640 640 HOH HOH . D 4 HOH A 141 641 641 HOH HOH . D 4 HOH A 142 642 642 HOH HOH . D 4 HOH A 143 643 643 HOH HOH . D 4 HOH A 144 644 644 HOH HOH . D 4 HOH A 145 645 645 HOH HOH . D 4 HOH A 146 646 646 HOH HOH . D 4 HOH A 147 647 647 HOH HOH . D 4 HOH A 148 648 648 HOH HOH . D 4 HOH A 149 649 649 HOH HOH . D 4 HOH A 150 650 650 HOH HOH . D 4 HOH A 151 651 651 HOH HOH . D 4 HOH A 152 652 652 HOH HOH . D 4 HOH A 153 653 653 HOH HOH . D 4 HOH A 154 654 654 HOH HOH . D 4 HOH A 155 655 655 HOH HOH . D 4 HOH A 156 656 656 HOH HOH . D 4 HOH A 157 657 657 HOH HOH . D 4 HOH A 158 658 658 HOH HOH . D 4 HOH A 159 659 659 HOH HOH . D 4 HOH A 160 660 660 HOH HOH . D 4 HOH A 161 661 661 HOH HOH . D 4 HOH A 162 662 662 HOH HOH . D 4 HOH A 163 663 663 HOH HOH . D 4 HOH A 164 664 664 HOH HOH . D 4 HOH A 165 665 665 HOH HOH . D 4 HOH A 166 666 666 HOH HOH . D 4 HOH A 167 667 667 HOH HOH . D 4 HOH A 168 668 668 HOH HOH . D 4 HOH A 169 669 669 HOH HOH . D 4 HOH A 170 670 670 HOH HOH . D 4 HOH A 171 671 671 HOH HOH . D 4 HOH A 172 672 672 HOH HOH . D 4 HOH A 173 673 673 HOH HOH . D 4 HOH A 174 674 674 HOH HOH . D 4 HOH A 175 675 675 HOH HOH . D 4 HOH A 176 676 676 HOH HOH . D 4 HOH A 177 677 677 HOH HOH . D 4 HOH A 178 678 678 HOH HOH . D 4 HOH A 179 679 679 HOH HOH . D 4 HOH A 180 680 680 HOH HOH . D 4 HOH A 181 681 681 HOH HOH . D 4 HOH A 182 682 682 HOH HOH . D 4 HOH A 183 683 683 HOH HOH . D 4 HOH A 184 684 684 HOH HOH . D 4 HOH A 185 685 685 HOH HOH . D 4 HOH A 186 686 686 HOH HOH . D 4 HOH A 187 687 687 HOH HOH . D 4 HOH A 188 688 688 HOH HOH . D 4 HOH A 189 689 689 HOH HOH . D 4 HOH A 190 690 690 HOH HOH . D 4 HOH A 191 691 691 HOH HOH . D 4 HOH A 192 692 692 HOH HOH . D 4 HOH A 193 693 693 HOH HOH . D 4 HOH A 194 694 694 HOH HOH . D 4 HOH A 195 695 695 HOH HOH . D 4 HOH A 196 696 696 HOH HOH . D 4 HOH A 197 697 697 HOH HOH . D 4 HOH A 198 698 698 HOH HOH . D 4 HOH A 199 699 699 HOH HOH . D 4 HOH A 200 700 700 HOH HOH . D 4 HOH A 201 701 701 HOH HOH . D 4 HOH A 202 702 702 HOH HOH . D 4 HOH A 203 703 703 HOH HOH . D 4 HOH A 204 704 704 HOH HOH . D 4 HOH A 205 705 705 HOH HOH . D 4 HOH A 206 706 706 HOH HOH . D 4 HOH A 207 707 707 HOH HOH . D 4 HOH A 208 708 708 HOH HOH . D 4 HOH A 209 709 709 HOH HOH . D 4 HOH A 210 710 710 HOH HOH . D 4 HOH A 211 711 711 HOH HOH . D 4 HOH A 212 712 712 HOH HOH . D 4 HOH A 213 713 713 HOH HOH . D 4 HOH A 214 714 714 HOH HOH . D 4 HOH A 215 715 715 HOH HOH . D 4 HOH A 216 716 716 HOH HOH . D 4 HOH A 217 717 717 HOH HOH . D 4 HOH A 218 718 718 HOH HOH . D 4 HOH A 219 719 719 HOH HOH . D 4 HOH A 220 720 720 HOH HOH . D 4 HOH A 221 721 721 HOH HOH . D 4 HOH A 222 722 722 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3B GTP . . . C 3 27.901 30.044 -39.758 1 47.49 ? O3B GTP 902 A 1 HETATM 2 P PB GTP . . . C 3 28.298 28.493 -39.926 1 47.77 ? PB GTP 902 A 1 HETATM 3 O O1B GTP . . . C 3 29.307 28.162 -38.716 1 48.02 ? O1B GTP 902 A 1 HETATM 4 O O2B GTP . . . C 3 27.12 27.597 -39.951 1 46.96 ? O2B GTP 902 A 1 HETATM 5 O O3A GTP . . . C 3 29.182 28.408 -41.269 1 43.87 ? O3A GTP 902 A 1 HETATM 6 P PA GTP . . . C 3 28.487 28.473 -42.72 1 38.04 ? PA GTP 902 A 1 HETATM 7 O O1A GTP . . . C 3 29.405 29.465 -43.594 1 39.26 ? O1A GTP 902 A 1 HETATM 8 O O2A GTP . . . C 3 27.082 28.936 -42.659 1 39.39 ? O2A GTP 902 A 1 HETATM 9 O O5' GTP . . . C 3 28.65 27.016 -43.384 1 34.55 ? O5' GTP 902 A 1 HETATM 10 C C5' GTP . . . C 3 27.636 26.025 -43.227 1 27.41 ? C5' GTP 902 A 1 HETATM 11 C C4' GTP . . . C 3 27.757 24.988 -44.321 1 23.84 ? C4' GTP 902 A 1 HETATM 12 O O4' GTP . . . C 3 27.364 25.576 -45.589 1 23.09 ? O4' GTP 902 A 1 HETATM 13 C C3' GTP . . . C 3 29.169 24.478 -44.56 1 22.06 ? C3' GTP 902 A 1 HETATM 14 O O3' GTP . . . C 3 29.486 23.418 -43.667 1 19.42 ? O3' GTP 902 A 1 HETATM 15 C C2' GTP . . . C 3 29.113 24.016 -46.01 1 21.81 ? C2' GTP 902 A 1 HETATM 16 O O2' GTP . . . C 3 28.544 22.729 -46.151 1 21.39 ? O2' GTP 902 A 1 HETATM 17 C C1' GTP . . . C 3 28.185 25.068 -46.628 1 23.41 ? C1' GTP 902 A 1 HETATM 18 N N9 GTP . . . C 3 28.881 26.194 -47.246 1 25.09 ? N9 GTP 902 A 1 HETATM 19 C C8 GTP . . . C 3 29.61 27.174 -46.612 1 24.4 ? C8 GTP 902 A 1 HETATM 20 N N7 GTP . . . C 3 30.101 28.062 -47.435 1 26.04 ? N7 GTP 902 A 1 HETATM 21 C C5 GTP . . . C 3 29.676 27.641 -48.688 1 24.6 ? C5 GTP 902 A 1 HETATM 22 C C6 GTP . . . C 3 29.897 28.206 -49.973 1 26.04 ? C6 GTP 902 A 1 HETATM 23 O O6 GTP . . . C 3 30.542 29.22 -50.267 1 26.79 ? O6 GTP 902 A 1 HETATM 24 N N1 GTP . . . C 3 29.277 27.462 -50.972 1 23.62 ? N1 GTP 902 A 1 HETATM 25 C C2 GTP . . . C 3 28.544 26.318 -50.767 1 25.13 ? C2 GTP 902 A 1 HETATM 26 N N2 GTP . . . C 3 28.019 25.743 -51.86 1 25.49 ? N2 GTP 902 A 1 HETATM 27 N N3 GTP . . . C 3 28.338 25.778 -49.576 1 22.92 ? N3 GTP 902 A 1 HETATM 28 C C4 GTP . . . C 3 28.926 26.488 -48.59 1 23.79 ? C4 GTP 902 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #