data_3EVD
#
_model_server_result.job_id            001zcTI50PAGbjdThqkHyA 
_model_server_result.datetime_utc      '2024-11-24 21:20:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3evd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    3EVD 
#
_exptl.entry_id    3EVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EVD 
_cell.length_a            104.958 
_cell.length_b            104.958 
_cell.length_c            51.902 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     3EVD 
_atom_sites.fract_transf_matrix[1][1]    0.009528 
_atom_sites.fract_transf_matrix[1][2]    0.005501 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GTP A 1 901 1001 GTP GTP . 
C 2 GTP A 1 902 1002 GTP GTP . 
D 3 SAH A 1 903 901 SAH SAH . 
E 4 HOH A 1 501 501 HOH HOH . 
E 4 HOH A 2 502 502 HOH HOH . 
E 4 HOH A 3 503 503 HOH HOH . 
E 4 HOH A 4 504 504 HOH HOH . 
E 4 HOH A 5 505 505 HOH HOH . 
E 4 HOH A 6 506 506 HOH HOH . 
E 4 HOH A 7 507 507 HOH HOH . 
E 4 HOH A 8 508 508 HOH HOH . 
E 4 HOH A 9 509 509 HOH HOH . 
E 4 HOH A 10 510 510 HOH HOH . 
E 4 HOH A 11 511 511 HOH HOH . 
E 4 HOH A 12 512 512 HOH HOH . 
E 4 HOH A 13 513 513 HOH HOH . 
E 4 HOH A 14 514 514 HOH HOH . 
E 4 HOH A 15 515 515 HOH HOH . 
E 4 HOH A 16 516 516 HOH HOH . 
E 4 HOH A 17 517 517 HOH HOH . 
E 4 HOH A 18 518 518 HOH HOH . 
E 4 HOH A 19 519 519 HOH HOH . 
E 4 HOH A 20 520 520 HOH HOH . 
E 4 HOH A 21 521 521 HOH HOH . 
E 4 HOH A 22 522 522 HOH HOH . 
E 4 HOH A 23 523 523 HOH HOH . 
E 4 HOH A 24 524 524 HOH HOH . 
E 4 HOH A 25 525 525 HOH HOH . 
E 4 HOH A 26 526 526 HOH HOH . 
E 4 HOH A 27 527 527 HOH HOH . 
E 4 HOH A 28 528 528 HOH HOH . 
E 4 HOH A 29 529 529 HOH HOH . 
E 4 HOH A 30 530 530 HOH HOH . 
E 4 HOH A 31 531 531 HOH HOH . 
E 4 HOH A 32 532 532 HOH HOH . 
E 4 HOH A 33 533 533 HOH HOH . 
E 4 HOH A 34 534 534 HOH HOH . 
E 4 HOH A 35 535 535 HOH HOH . 
E 4 HOH A 36 536 536 HOH HOH . 
E 4 HOH A 37 537 537 HOH HOH . 
E 4 HOH A 38 538 538 HOH HOH . 
E 4 HOH A 39 539 539 HOH HOH . 
E 4 HOH A 40 540 540 HOH HOH . 
E 4 HOH A 41 541 541 HOH HOH . 
E 4 HOH A 42 542 542 HOH HOH . 
E 4 HOH A 43 543 543 HOH HOH . 
E 4 HOH A 44 544 544 HOH HOH . 
E 4 HOH A 45 545 545 HOH HOH . 
E 4 HOH A 46 546 546 HOH HOH . 
E 4 HOH A 47 547 547 HOH HOH . 
E 4 HOH A 48 548 548 HOH HOH . 
E 4 HOH A 49 549 549 HOH HOH . 
E 4 HOH A 50 550 550 HOH HOH . 
E 4 HOH A 51 551 551 HOH HOH . 
E 4 HOH A 52 552 552 HOH HOH . 
E 4 HOH A 53 553 553 HOH HOH . 
E 4 HOH A 54 554 554 HOH HOH . 
E 4 HOH A 55 555 555 HOH HOH . 
E 4 HOH A 56 556 556 HOH HOH . 
E 4 HOH A 57 557 557 HOH HOH . 
E 4 HOH A 58 558 558 HOH HOH . 
E 4 HOH A 59 559 559 HOH HOH . 
E 4 HOH A 60 560 560 HOH HOH . 
E 4 HOH A 61 561 561 HOH HOH . 
E 4 HOH A 62 562 562 HOH HOH . 
E 4 HOH A 63 563 563 HOH HOH . 
E 4 HOH A 64 564 564 HOH HOH . 
E 4 HOH A 65 565 565 HOH HOH . 
E 4 HOH A 66 566 566 HOH HOH . 
E 4 HOH A 67 567 567 HOH HOH . 
E 4 HOH A 68 568 568 HOH HOH . 
E 4 HOH A 69 569 569 HOH HOH . 
E 4 HOH A 70 570 570 HOH HOH . 
E 4 HOH A 71 571 571 HOH HOH . 
E 4 HOH A 72 572 572 HOH HOH . 
E 4 HOH A 73 573 573 HOH HOH . 
E 4 HOH A 74 574 574 HOH HOH . 
E 4 HOH A 75 575 575 HOH HOH . 
E 4 HOH A 76 576 576 HOH HOH . 
E 4 HOH A 77 577 577 HOH HOH . 
E 4 HOH A 78 578 578 HOH HOH . 
E 4 HOH A 79 579 579 HOH HOH . 
E 4 HOH A 80 580 580 HOH HOH . 
E 4 HOH A 81 581 581 HOH HOH . 
E 4 HOH A 82 582 582 HOH HOH . 
E 4 HOH A 83 583 583 HOH HOH . 
E 4 HOH A 84 584 584 HOH HOH . 
E 4 HOH A 85 585 585 HOH HOH . 
E 4 HOH A 86 586 586 HOH HOH . 
E 4 HOH A 87 587 587 HOH HOH . 
E 4 HOH A 88 588 588 HOH HOH . 
E 4 HOH A 89 589 589 HOH HOH . 
E 4 HOH A 90 590 590 HOH HOH . 
E 4 HOH A 91 591 591 HOH HOH . 
E 4 HOH A 92 592 592 HOH HOH . 
E 4 HOH A 93 593 593 HOH HOH . 
E 4 HOH A 94 594 594 HOH HOH . 
E 4 HOH A 95 595 595 HOH HOH . 
E 4 HOH A 96 596 596 HOH HOH . 
E 4 HOH A 97 597 597 HOH HOH . 
E 4 HOH A 98 598 598 HOH HOH . 
E 4 HOH A 99 599 599 HOH HOH . 
E 4 HOH A 100 600 600 HOH HOH . 
E 4 HOH A 101 601 601 HOH HOH . 
E 4 HOH A 102 602 602 HOH HOH . 
E 4 HOH A 103 603 603 HOH HOH . 
E 4 HOH A 104 604 604 HOH HOH . 
E 4 HOH A 105 605 605 HOH HOH . 
E 4 HOH A 106 606 606 HOH HOH . 
E 4 HOH A 107 607 607 HOH HOH . 
E 4 HOH A 108 608 608 HOH HOH . 
E 4 HOH A 109 609 609 HOH HOH . 
E 4 HOH A 110 610 610 HOH HOH . 
E 4 HOH A 111 611 611 HOH HOH . 
E 4 HOH A 112 612 612 HOH HOH . 
E 4 HOH A 113 613 613 HOH HOH . 
E 4 HOH A 114 614 614 HOH HOH . 
E 4 HOH A 115 615 615 HOH HOH . 
E 4 HOH A 116 616 616 HOH HOH . 
E 4 HOH A 117 617 617 HOH HOH . 
E 4 HOH A 118 618 618 HOH HOH . 
E 4 HOH A 119 619 619 HOH HOH . 
E 4 HOH A 120 620 620 HOH HOH . 
E 4 HOH A 121 621 621 HOH HOH . 
E 4 HOH A 122 622 622 HOH HOH . 
E 4 HOH A 123 623 623 HOH HOH . 
E 4 HOH A 124 624 624 HOH HOH . 
E 4 HOH A 125 625 625 HOH HOH . 
E 4 HOH A 126 626 626 HOH HOH . 
E 4 HOH A 127 627 627 HOH HOH . 
E 4 HOH A 128 628 628 HOH HOH . 
E 4 HOH A 129 629 629 HOH HOH . 
E 4 HOH A 130 630 630 HOH HOH . 
E 4 HOH A 131 631 631 HOH HOH . 
E 4 HOH A 132 632 632 HOH HOH . 
E 4 HOH A 133 633 633 HOH HOH . 
E 4 HOH A 134 634 634 HOH HOH . 
E 4 HOH A 135 635 635 HOH HOH . 
E 4 HOH A 136 636 636 HOH HOH . 
E 4 HOH A 137 637 637 HOH HOH . 
E 4 HOH A 138 638 638 HOH HOH . 
E 4 HOH A 139 639 639 HOH HOH . 
E 4 HOH A 140 640 640 HOH HOH . 
E 4 HOH A 141 641 641 HOH HOH . 
E 4 HOH A 142 642 642 HOH HOH . 
E 4 HOH A 143 643 643 HOH HOH . 
E 4 HOH A 144 644 644 HOH HOH . 
E 4 HOH A 145 645 645 HOH HOH . 
E 4 HOH A 146 646 646 HOH HOH . 
E 4 HOH A 147 647 647 HOH HOH . 
E 4 HOH A 148 648 648 HOH HOH . 
E 4 HOH A 149 649 649 HOH HOH . 
E 4 HOH A 150 650 650 HOH HOH . 
E 4 HOH A 151 651 651 HOH HOH . 
E 4 HOH A 152 652 652 HOH HOH . 
E 4 HOH A 153 653 653 HOH HOH . 
E 4 HOH A 154 654 654 HOH HOH . 
E 4 HOH A 155 655 655 HOH HOH . 
E 4 HOH A 156 656 656 HOH HOH . 
E 4 HOH A 157 657 657 HOH HOH . 
E 4 HOH A 158 658 658 HOH HOH . 
E 4 HOH A 159 659 659 HOH HOH . 
E 4 HOH A 160 660 660 HOH HOH . 
E 4 HOH A 161 661 661 HOH HOH . 
E 4 HOH A 162 662 662 HOH HOH . 
E 4 HOH A 163 663 663 HOH HOH . 
E 4 HOH A 164 664 664 HOH HOH . 
E 4 HOH A 165 665 665 HOH HOH . 
E 4 HOH A 166 667 667 HOH HOH . 
E 4 HOH A 167 668 668 HOH HOH . 
E 4 HOH A 168 669 669 HOH HOH . 
E 4 HOH A 169 670 670 HOH HOH . 
E 4 HOH A 170 671 671 HOH HOH . 
E 4 HOH A 171 672 672 HOH HOH . 
E 4 HOH A 172 673 673 HOH HOH . 
E 4 HOH A 173 674 674 HOH HOH . 
E 4 HOH A 174 675 675 HOH HOH . 
E 4 HOH A 175 676 676 HOH HOH . 
E 4 HOH A 176 677 677 HOH HOH . 
E 4 HOH A 177 678 678 HOH HOH . 
E 4 HOH A 178 679 679 HOH HOH . 
E 4 HOH A 179 680 680 HOH HOH . 
E 4 HOH A 180 681 681 HOH HOH . 
E 4 HOH A 181 682 682 HOH HOH . 
E 4 HOH A 182 683 683 HOH HOH . 
E 4 HOH A 183 684 684 HOH HOH . 
E 4 HOH A 184 685 685 HOH HOH . 
E 4 HOH A 185 686 686 HOH HOH . 
E 4 HOH A 186 687 687 HOH HOH . 
E 4 HOH A 187 688 688 HOH HOH . 
E 4 HOH A 188 689 689 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . C 2 28.313 40.373 -34.984 1 86.17 ? PG GTP 902 A 1 
HETATM 2 O O1G GTP . . . C 2 29.311 39.281 -35.614 1 86.72 ? O1G GTP 902 A 1 
HETATM 3 O O2G GTP . . . C 2 28.399 41.657 -35.951 1 86.75 ? O2G GTP 902 A 1 
HETATM 4 O O3G GTP . . . C 2 28.672 40.7 -33.587 1 86.5 ? O3G GTP 902 A 1 
HETATM 5 O O3B GTP . . . C 2 26.835 39.753 -35.127 1 86.14 ? O3B GTP 902 A 1 
HETATM 6 P PB GTP . . . C 2 25.984 39.401 -33.805 1 85.09 ? PB GTP 902 A 1 
HETATM 7 O O1B GTP . . . C 2 26.187 40.653 -32.813 1 85.3 ? O1B GTP 902 A 1 
HETATM 8 O O2B GTP . . . C 2 24.558 39.124 -34.094 1 85.32 ? O2B GTP 902 A 1 
HETATM 9 O O3A GTP . . . C 2 26.732 38.15 -33.117 1 84.84 ? O3A GTP 902 A 1 
HETATM 10 P PA GTP . . . C 2 26.174 36.658 -33.366 1 83.84 ? PA GTP 902 A 1 
HETATM 11 O O1A GTP . . . C 2 24.816 36.561 -32.504 1 84.07 ? O1A GTP 902 A 1 
HETATM 12 O O2A GTP . . . C 2 27.159 35.62 -32.984 1 84.37 ? O2A GTP 902 A 1 
HETATM 13 O O5' GTP . . . C 2 25.73 36.584 -34.914 1 84.13 ? O5' GTP 902 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           13 
#