data_3EVG
#
_model_server_result.job_id            yH4gLG12va_PlRYNqHOofQ 
_model_server_result.datetime_utc      '2024-11-24 19:34:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3evg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":901}' 
#
_entry.id    3EVG 
#
_exptl.entry_id    3EVG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EVG 
_cell.length_a            112.615 
_cell.length_b            112.615 
_cell.length_c            55.696 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EVG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     3EVG 
_atom_sites.fract_transf_matrix[1][1]    0.00888 
_atom_sites.fract_transf_matrix[1][2]    0.005127 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010254 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 902 401 SO4 SO4 . 
C 2 SO4 A 1 903 402 SO4 SO4 . 
D 2 SO4 A 1 904 403 SO4 SO4 . 
E 2 SO4 A 1 905 404 SO4 SO4 . 
F 2 SO4 A 1 906 405 SO4 SO4 . 
G 3 SAH A 1 901 900 SAH SAH . 
H 4 HOH A 1 501 501 HOH HOH . 
H 4 HOH A 2 502 502 HOH HOH . 
H 4 HOH A 3 503 503 HOH HOH . 
H 4 HOH A 4 504 504 HOH HOH . 
H 4 HOH A 5 505 505 HOH HOH . 
H 4 HOH A 6 506 506 HOH HOH . 
H 4 HOH A 7 507 507 HOH HOH . 
H 4 HOH A 8 508 508 HOH HOH . 
H 4 HOH A 9 509 509 HOH HOH . 
H 4 HOH A 10 510 510 HOH HOH . 
H 4 HOH A 11 511 511 HOH HOH . 
H 4 HOH A 12 512 512 HOH HOH . 
H 4 HOH A 13 513 513 HOH HOH . 
H 4 HOH A 14 514 514 HOH HOH . 
H 4 HOH A 15 515 515 HOH HOH . 
H 4 HOH A 16 516 516 HOH HOH . 
H 4 HOH A 17 517 517 HOH HOH . 
H 4 HOH A 18 518 518 HOH HOH . 
H 4 HOH A 19 519 519 HOH HOH . 
H 4 HOH A 20 520 520 HOH HOH . 
H 4 HOH A 21 522 522 HOH HOH . 
H 4 HOH A 22 523 523 HOH HOH . 
H 4 HOH A 23 524 524 HOH HOH . 
H 4 HOH A 24 525 525 HOH HOH . 
H 4 HOH A 25 526 526 HOH HOH . 
H 4 HOH A 26 527 527 HOH HOH . 
H 4 HOH A 27 528 528 HOH HOH . 
H 4 HOH A 28 529 529 HOH HOH . 
H 4 HOH A 29 530 530 HOH HOH . 
H 4 HOH A 30 531 531 HOH HOH . 
H 4 HOH A 31 532 532 HOH HOH . 
H 4 HOH A 32 533 533 HOH HOH . 
H 4 HOH A 33 534 534 HOH HOH . 
H 4 HOH A 34 535 535 HOH HOH . 
H 4 HOH A 35 536 536 HOH HOH . 
H 4 HOH A 36 538 538 HOH HOH . 
H 4 HOH A 37 539 539 HOH HOH . 
H 4 HOH A 38 540 540 HOH HOH . 
H 4 HOH A 39 541 541 HOH HOH . 
H 4 HOH A 40 542 542 HOH HOH . 
H 4 HOH A 41 543 543 HOH HOH . 
H 4 HOH A 42 544 544 HOH HOH . 
H 4 HOH A 43 545 545 HOH HOH . 
H 4 HOH A 44 546 546 HOH HOH . 
H 4 HOH A 45 547 547 HOH HOH . 
H 4 HOH A 46 548 548 HOH HOH . 
H 4 HOH A 47 549 549 HOH HOH . 
H 4 HOH A 48 551 551 HOH HOH . 
H 4 HOH A 49 552 552 HOH HOH . 
H 4 HOH A 50 553 553 HOH HOH . 
H 4 HOH A 51 554 554 HOH HOH . 
H 4 HOH A 52 555 555 HOH HOH . 
H 4 HOH A 53 556 556 HOH HOH . 
H 4 HOH A 54 557 557 HOH HOH . 
H 4 HOH A 55 558 558 HOH HOH . 
H 4 HOH A 56 559 559 HOH HOH . 
H 4 HOH A 57 561 561 HOH HOH . 
H 4 HOH A 58 562 562 HOH HOH . 
H 4 HOH A 59 563 563 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . G 3 -91.261 65.586 -38.664 1 49.38 ? N SAH 901 A 1 
HETATM 2 C CA SAH . . . G 3 -91.126 64.126 -38.806 1 50.11 ? CA SAH 901 A 1 
HETATM 3 C CB SAH . . . G 3 -90.966 63.503 -37.424 1 52.28 ? CB SAH 901 A 1 
HETATM 4 C CG SAH . . . G 3 -89.517 63.055 -37.23 1 56.98 ? CG SAH 901 A 1 
HETATM 5 S SD SAH . . . G 3 -89.164 62.374 -35.567 1 62.67 ? SD SAH 901 A 1 
HETATM 6 C C SAH . . . G 3 -92.38 63.578 -39.465 1 49.62 ? C SAH 901 A 1 
HETATM 7 O O SAH . . . G 3 -93.4 64.278 -39.4 1 49.24 ? O SAH 901 A 1 
HETATM 8 O OXT SAH . . . G 3 -92.291 62.451 -40.015 1 47.61 ? OXT SAH 901 A 1 
HETATM 9 C C5' SAH . . . G 3 -87.476 63.047 -35.347 1 63.55 ? C5' SAH 901 A 1 
HETATM 10 C C4' SAH . . . G 3 -86.362 62.308 -36.108 1 65.62 ? C4' SAH 901 A 1 
HETATM 11 O O4' SAH . . . G 3 -85.104 62.92 -35.764 1 66.33 ? O4' SAH 901 A 1 
HETATM 12 C C3' SAH . . . G 3 -86.237 60.845 -35.663 1 65.55 ? C3' SAH 901 A 1 
HETATM 13 O O3' SAH . . . G 3 -86.68 59.985 -36.718 1 64.47 ? O3' SAH 901 A 1 
HETATM 14 C C2' SAH . . . G 3 -84.728 60.643 -35.459 1 66.03 ? C2' SAH 901 A 1 
HETATM 15 O O2' SAH . . . G 3 -84.315 59.514 -36.235 1 66.69 ? O2' SAH 901 A 1 
HETATM 16 C C1' SAH . . . G 3 -84.139 61.905 -36.097 1 66.83 ? C1' SAH 901 A 1 
HETATM 17 N N9 SAH . . . G 3 -82.849 62.266 -35.456 1 68.96 ? N9 SAH 901 A 1 
HETATM 18 C C8 SAH . . . G 3 -82.587 62.259 -34.154 1 69.77 ? C8 SAH 901 A 1 
HETATM 19 N N7 SAH . . . G 3 -81.359 62.728 -33.945 1 70.44 ? N7 SAH 901 A 1 
HETATM 20 C C5 SAH . . . G 3 -80.83 63.034 -35.136 1 69.75 ? C5 SAH 901 A 1 
HETATM 21 C C6 SAH . . . G 3 -79.621 63.566 -35.536 1 69.79 ? C6 SAH 901 A 1 
HETATM 22 N N6 SAH . . . G 3 -78.666 63.834 -34.659 1 69.5 ? N6 SAH 901 A 1 
HETATM 23 N N1 SAH . . . G 3 -79.417 63.777 -36.856 1 69.83 ? N1 SAH 901 A 1 
HETATM 24 C C2 SAH . . . G 3 -80.34 63.479 -37.739 1 69.16 ? C2 SAH 901 A 1 
HETATM 25 N N3 SAH . . . G 3 -81.509 62.964 -37.389 1 68.65 ? N3 SAH 901 A 1 
HETATM 26 C C4 SAH . . . G 3 -81.774 62.737 -36.095 1 69.19 ? C4 SAH 901 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#