data_3EVG # _model_server_result.job_id 2xnKzOTCrEV0aP0cW7MHFA _model_server_result.datetime_utc '2024-11-08 15:13:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3evg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 3EVG # _exptl.entry_id 3EVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EVG _cell.length_a 112.615 _cell.length_b 112.615 _cell.length_c 55.696 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 3EVG _atom_sites.fract_transf_matrix[1][1] 0.00888 _atom_sites.fract_transf_matrix[1][2] 0.005127 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 902 401 SO4 SO4 . C 2 SO4 A 1 903 402 SO4 SO4 . D 2 SO4 A 1 904 403 SO4 SO4 . E 2 SO4 A 1 905 404 SO4 SO4 . F 2 SO4 A 1 906 405 SO4 SO4 . G 3 SAH A 1 901 900 SAH SAH . H 4 HOH A 1 501 501 HOH HOH . H 4 HOH A 2 502 502 HOH HOH . H 4 HOH A 3 503 503 HOH HOH . H 4 HOH A 4 504 504 HOH HOH . H 4 HOH A 5 505 505 HOH HOH . H 4 HOH A 6 506 506 HOH HOH . H 4 HOH A 7 507 507 HOH HOH . H 4 HOH A 8 508 508 HOH HOH . H 4 HOH A 9 509 509 HOH HOH . H 4 HOH A 10 510 510 HOH HOH . H 4 HOH A 11 511 511 HOH HOH . H 4 HOH A 12 512 512 HOH HOH . H 4 HOH A 13 513 513 HOH HOH . H 4 HOH A 14 514 514 HOH HOH . H 4 HOH A 15 515 515 HOH HOH . H 4 HOH A 16 516 516 HOH HOH . H 4 HOH A 17 517 517 HOH HOH . H 4 HOH A 18 518 518 HOH HOH . H 4 HOH A 19 519 519 HOH HOH . H 4 HOH A 20 520 520 HOH HOH . H 4 HOH A 21 522 522 HOH HOH . H 4 HOH A 22 523 523 HOH HOH . H 4 HOH A 23 524 524 HOH HOH . H 4 HOH A 24 525 525 HOH HOH . H 4 HOH A 25 526 526 HOH HOH . H 4 HOH A 26 527 527 HOH HOH . H 4 HOH A 27 528 528 HOH HOH . H 4 HOH A 28 529 529 HOH HOH . H 4 HOH A 29 530 530 HOH HOH . H 4 HOH A 30 531 531 HOH HOH . H 4 HOH A 31 532 532 HOH HOH . H 4 HOH A 32 533 533 HOH HOH . H 4 HOH A 33 534 534 HOH HOH . H 4 HOH A 34 535 535 HOH HOH . H 4 HOH A 35 536 536 HOH HOH . H 4 HOH A 36 538 538 HOH HOH . H 4 HOH A 37 539 539 HOH HOH . H 4 HOH A 38 540 540 HOH HOH . H 4 HOH A 39 541 541 HOH HOH . H 4 HOH A 40 542 542 HOH HOH . H 4 HOH A 41 543 543 HOH HOH . H 4 HOH A 42 544 544 HOH HOH . H 4 HOH A 43 545 545 HOH HOH . H 4 HOH A 44 546 546 HOH HOH . H 4 HOH A 45 547 547 HOH HOH . H 4 HOH A 46 548 548 HOH HOH . H 4 HOH A 47 549 549 HOH HOH . H 4 HOH A 48 551 551 HOH HOH . H 4 HOH A 49 552 552 HOH HOH . H 4 HOH A 50 553 553 HOH HOH . H 4 HOH A 51 554 554 HOH HOH . H 4 HOH A 52 555 555 HOH HOH . H 4 HOH A 53 556 556 HOH HOH . H 4 HOH A 54 557 557 HOH HOH . H 4 HOH A 55 558 558 HOH HOH . H 4 HOH A 56 559 559 HOH HOH . H 4 HOH A 57 561 561 HOH HOH . H 4 HOH A 58 562 562 HOH HOH . H 4 HOH A 59 563 563 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . G 3 -91.261 65.586 -38.664 1 49.38 ? N SAH 901 A 1 HETATM 2 C CA SAH . . . G 3 -91.126 64.126 -38.806 1 50.11 ? CA SAH 901 A 1 HETATM 3 C CB SAH . . . G 3 -90.966 63.503 -37.424 1 52.28 ? CB SAH 901 A 1 HETATM 4 C CG SAH . . . G 3 -89.517 63.055 -37.23 1 56.98 ? CG SAH 901 A 1 HETATM 5 S SD SAH . . . G 3 -89.164 62.374 -35.567 1 62.67 ? SD SAH 901 A 1 HETATM 6 C C SAH . . . G 3 -92.38 63.578 -39.465 1 49.62 ? C SAH 901 A 1 HETATM 7 O O SAH . . . G 3 -93.4 64.278 -39.4 1 49.24 ? O SAH 901 A 1 HETATM 8 O OXT SAH . . . G 3 -92.291 62.451 -40.015 1 47.61 ? OXT SAH 901 A 1 HETATM 9 C C5' SAH . . . G 3 -87.476 63.047 -35.347 1 63.55 ? C5' SAH 901 A 1 HETATM 10 C C4' SAH . . . G 3 -86.362 62.308 -36.108 1 65.62 ? C4' SAH 901 A 1 HETATM 11 O O4' SAH . . . G 3 -85.104 62.92 -35.764 1 66.33 ? O4' SAH 901 A 1 HETATM 12 C C3' SAH . . . G 3 -86.237 60.845 -35.663 1 65.55 ? C3' SAH 901 A 1 HETATM 13 O O3' SAH . . . G 3 -86.68 59.985 -36.718 1 64.47 ? O3' SAH 901 A 1 HETATM 14 C C2' SAH . . . G 3 -84.728 60.643 -35.459 1 66.03 ? C2' SAH 901 A 1 HETATM 15 O O2' SAH . . . G 3 -84.315 59.514 -36.235 1 66.69 ? O2' SAH 901 A 1 HETATM 16 C C1' SAH . . . G 3 -84.139 61.905 -36.097 1 66.83 ? C1' SAH 901 A 1 HETATM 17 N N9 SAH . . . G 3 -82.849 62.266 -35.456 1 68.96 ? N9 SAH 901 A 1 HETATM 18 C C8 SAH . . . G 3 -82.587 62.259 -34.154 1 69.77 ? C8 SAH 901 A 1 HETATM 19 N N7 SAH . . . G 3 -81.359 62.728 -33.945 1 70.44 ? N7 SAH 901 A 1 HETATM 20 C C5 SAH . . . G 3 -80.83 63.034 -35.136 1 69.75 ? C5 SAH 901 A 1 HETATM 21 C C6 SAH . . . G 3 -79.621 63.566 -35.536 1 69.79 ? C6 SAH 901 A 1 HETATM 22 N N6 SAH . . . G 3 -78.666 63.834 -34.659 1 69.5 ? N6 SAH 901 A 1 HETATM 23 N N1 SAH . . . G 3 -79.417 63.777 -36.856 1 69.83 ? N1 SAH 901 A 1 HETATM 24 C C2 SAH . . . G 3 -80.34 63.479 -37.739 1 69.16 ? C2 SAH 901 A 1 HETATM 25 N N3 SAH . . . G 3 -81.509 62.964 -37.389 1 68.65 ? N3 SAH 901 A 1 HETATM 26 C C4 SAH . . . G 3 -81.774 62.737 -36.095 1 69.19 ? C4 SAH 901 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #