data_3EVJ # _model_server_result.job_id vzGvSfw5fV9E_SEjMgZbSA _model_server_result.datetime_utc '2024-12-12 15:13:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3evj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 3EVJ # _exptl.entry_id 3EVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.18 _cell.angle_gamma 90 _cell.entry_id 3EVJ _cell.length_a 65.846 _cell.length_b 87.055 _cell.length_c 92.383 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 6 ? 4 4 3 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 4 5 3 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 5 2 1 IDS ZDO C1 O1 . O4 HO4 . sing 9 ? 5 3 2 SUS IDS C1 O1 . O4 HO4 . sing 10 ? 5 4 3 BDP SUS C1 O1 . O4 HO4 . sing 11 ? 5 5 4 SGN BDP C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 A 1 NAG I 841 NAG 2 n C NAG 2 A 2 NAG I 842 NAG 2 n C MAN 3 A 3 MAN I 843 MAN 3 n D NAG 1 B 1 NAG I 861 NAG 3 n D NAG 2 B 2 NAG I 862 NAG 3 n E NAG 1 C 1 NAG L 841 NAG 3 n E NAG 2 C 2 NAG L 842 NAG 4 n F NAG 1 D 1 NAG L 861 NAG 4 n F NAG 2 D 2 NAG L 862 NAG 4 n F MAN 3 D 3 MAN L 863 MAN 4 n F MAN 4 D 4 MAN L 868 MAN 4 n F MAN 5 D 5 MAN L 864 MAN 5 n G ZDO 1 E 1 ZDO P 1 NTO 5 n G IDS 2 E 2 IDS P 1 NTO 5 n G SUS 3 E 3 SUS P 1 NTO 5 n G BDP 4 E 4 BDP P 1 NTO 5 n G SGN 5 E 5 SGN P 1 NTO 5 n H ZDO 1 F 1 ZDO P 2 NTO 5 n H IDS 2 F 2 IDS P 2 NTO 5 n H SUS 3 F 3 SUS P 2 NTO 5 n H BDP 4 F 4 BDP P 2 NTO 5 n H SGN 5 F 5 SGN P 2 NTO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 I CYS 8 1_555 A SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 21 I CYS 21 1_555 A SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 247 I CYS 247 1_555 A SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 8 L CYS 8 1_555 B SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 B SG CYS 21 L CYS 21 1_555 B SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf6 B SG CYS 247 L CYS 247 1_555 B SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 96 I ASN 96 1_555 I C1 NAG . I NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 155 I ASN 155 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 192 I ASN 192 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 96 L ASN 96 1_555 J C1 NAG . L NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 B ND2 ASN 155 L ASN 155 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 B ND2 ASN 192 L ASN 192 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale8 C O4 NAG . A NAG 2 1_555 C C1 MAN . A MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale9 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale10 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale11 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale12 F O4 NAG . D NAG 2 1_555 F C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale13 F O3 MAN . D MAN 3 1_555 F C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale14 F O6 MAN . D MAN 3 1_555 F C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale15 G O4 ZDO . E ZDO 1 1_555 G C1 IDS . E IDS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale16 G O4 IDS . E IDS 2 1_555 G C1 SUS . E SUS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing covale ? covale17 G O4 SUS . E SUS 3 1_555 G C1 BDP . E BDP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 sing covale ? covale18 G O4 BDP . E BDP 4 1_555 G C1 SGN . E SGN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing covale ? covale19 H O4 ZDO . F ZDO 1 1_555 H C1 IDS . F IDS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 sing covale ? covale20 H O4 IDS . F IDS 2 1_555 H C1 SUS . F SUS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 sing covale ? covale21 H O4 SUS . F SUS 3 1_555 H C1 BDP . F BDP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale22 H O4 BDP . F BDP 4 1_555 H C1 SGN . F SGN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 311 n n C1 O1 NAG sing 312 n n C1 O5 NAG sing 313 n n C1 H1 NAG sing 314 n n C2 C3 NAG sing 315 n n C2 N2 NAG sing 316 n n C2 H2 NAG sing 317 n n C3 C4 NAG sing 318 n n C3 O3 NAG sing 319 n n C3 H3 NAG sing 320 n n C4 C5 NAG sing 321 n n C4 O4 NAG sing 322 n n C4 H4 NAG sing 323 n n C5 C6 NAG sing 324 n n C5 O5 NAG sing 325 n n C5 H5 NAG sing 326 n n C6 O6 NAG sing 327 n n C6 H61 NAG sing 328 n n C6 H62 NAG sing 329 n n C7 C8 NAG sing 330 n n C7 N2 NAG sing 331 n n C7 O7 NAG doub 332 n n C8 H81 NAG sing 333 n n C8 H82 NAG sing 334 n n C8 H83 NAG sing 335 n n N2 HN2 NAG sing 336 n n O1 HO1 NAG sing 337 n n O3 HO3 NAG sing 338 n n O4 HO4 NAG sing 339 n n O6 HO6 NAG sing 340 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3EVJ _atom_sites.fract_transf_matrix[1][1] 0.015187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 NAG I 1 801 801 NAG NAG . J 6 NAG L 1 801 801 NAG NAG . K 7 HOH I 1 864 1 HOH HOH . K 7 HOH I 2 865 2 HOH HOH . K 7 HOH I 3 866 3 HOH HOH . K 7 HOH I 4 867 4 HOH HOH . K 7 HOH I 5 868 8 HOH HOH . K 7 HOH I 6 869 9 HOH HOH . K 7 HOH I 7 870 10 HOH HOH . K 7 HOH I 8 871 11 HOH HOH . K 7 HOH I 9 872 13 HOH HOH . K 7 HOH I 10 873 14 HOH HOH . K 7 HOH I 11 874 15 HOH HOH . K 7 HOH I 12 875 22 HOH HOH . K 7 HOH I 13 876 23 HOH HOH . K 7 HOH I 14 877 24 HOH HOH . K 7 HOH I 15 878 25 HOH HOH . K 7 HOH I 16 879 29 HOH HOH . K 7 HOH I 17 880 34 HOH HOH . K 7 HOH I 18 881 35 HOH HOH . K 7 HOH I 19 882 36 HOH HOH . K 7 HOH I 20 883 37 HOH HOH . K 7 HOH I 21 884 38 HOH HOH . K 7 HOH I 22 885 39 HOH HOH . K 7 HOH I 23 886 43 HOH HOH . K 7 HOH I 24 887 44 HOH HOH . L 7 HOH L 1 870 5 HOH HOH . L 7 HOH L 2 871 6 HOH HOH . L 7 HOH L 3 872 7 HOH HOH . L 7 HOH L 4 873 12 HOH HOH . L 7 HOH L 5 874 16 HOH HOH . L 7 HOH L 6 875 17 HOH HOH . L 7 HOH L 7 876 18 HOH HOH . L 7 HOH L 8 877 19 HOH HOH . L 7 HOH L 9 878 20 HOH HOH . L 7 HOH L 10 879 21 HOH HOH . L 7 HOH L 11 880 26 HOH HOH . L 7 HOH L 12 881 27 HOH HOH . L 7 HOH L 13 882 28 HOH HOH . L 7 HOH L 14 883 30 HOH HOH . L 7 HOH L 15 884 31 HOH HOH . L 7 HOH L 16 885 32 HOH HOH . L 7 HOH L 17 886 33 HOH HOH . L 7 HOH L 18 887 40 HOH HOH . L 7 HOH L 19 888 41 HOH HOH . L 7 HOH L 20 889 42 HOH HOH . L 7 HOH L 21 890 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 6 65.54 3.604 42.548 1 105.12 ? C1 NAG 801 I 1 HETATM 2 C C2 NAG . . . I 6 66.488 4.082 43.662 1 106.57 ? C2 NAG 801 I 1 HETATM 3 C C3 NAG . . . I 6 67.471 5.129 43.137 1 108.03 ? C3 NAG 801 I 1 HETATM 4 C C4 NAG . . . I 6 68.212 4.556 41.93 1 108.01 ? C4 NAG 801 I 1 HETATM 5 C C5 NAG . . . I 6 67.176 4.203 40.864 1 107.34 ? C5 NAG 801 I 1 HETATM 6 C C6 NAG . . . I 6 67.813 3.647 39.605 0 107.49 ? C6 NAG 801 I 1 HETATM 7 C C7 NAG . . . I 6 64.927 5.671 44.608 0 107.07 ? C7 NAG 801 I 1 HETATM 8 C C8 NAG . . . I 6 63.826 5.873 45.637 0 107.15 ? C8 NAG 801 I 1 HETATM 9 N N2 NAG . . . I 6 65.732 4.624 44.777 0 106.9 ? N2 NAG 801 I 1 HETATM 10 O O3 NAG . . . I 6 68.392 5.476 44.161 1 109.9 ? O3 NAG 801 I 1 HETATM 11 O O4 NAG . . . I 6 69.151 5.498 41.424 1 107.93 ? O4 NAG 801 I 1 HETATM 12 O O5 NAG . . . I 6 66.28 3.19 41.376 1 106.55 ? O5 NAG 801 I 1 HETATM 13 O O6 NAG . . . I 6 66.969 3.823 38.476 0 107.55 ? O6 NAG 801 I 1 HETATM 14 O O7 NAG . . . I 6 65.041 6.459 43.67 0 107.15 ? O7 NAG 801 I 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #