data_3EWA # _model_server_result.job_id GwxgUZ5yFGSpT8e_38FTpA _model_server_result.datetime_utc '2024-10-18 16:21:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ewa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3EWA # _exptl.entry_id 3EWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EWA _cell.length_a 81.1 _cell.length_b 81.1 _cell.length_c 107.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 98 A GLN 98 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc2 A OG1 THR 112 A THR 112 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 A OD1 ASP 246 A ASP 246 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 B O2G ANP . A ANP 401 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc5 B O1B ANP . A ANP 401 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc6 C MG MG . A MG 501 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc7 C MG MG . A MG 501 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc8 C MG MG . A MG 501 1_555 E O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc9 D MG MG . A MG 502 1_555 E O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc10 D MG MG . A MG 502 1_555 E O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc11 D MG MG . A MG 502 1_555 E O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 D MG MG . A MG 502 1_555 E O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3EWA _atom_sites.fract_transf_matrix[1][1] 0.01233 _atom_sites.fract_transf_matrix[1][2] 0.007119 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 401 ANP ANP . C 3 MG A 1 501 501 MG MG2 . D 3 MG A 1 502 502 MG MG2 . E 4 HOH A 1 598 598 HOH TIP . E 4 HOH A 2 599 599 HOH TIP . E 4 HOH A 3 600 600 HOH TIP . E 4 HOH A 4 601 601 HOH TIP . E 4 HOH A 5 602 602 HOH TIP . E 4 HOH A 6 603 603 HOH TIP . E 4 HOH A 7 604 604 HOH TIP . E 4 HOH A 8 605 605 HOH TIP . E 4 HOH A 9 606 606 HOH TIP . E 4 HOH A 10 607 607 HOH TIP . E 4 HOH A 11 610 610 HOH TIP . E 4 HOH A 12 611 611 HOH TIP . E 4 HOH A 13 612 612 HOH TIP . E 4 HOH A 14 613 613 HOH TIP . E 4 HOH A 15 614 614 HOH TIP . E 4 HOH A 16 615 615 HOH TIP . E 4 HOH A 17 616 616 HOH TIP . E 4 HOH A 18 617 617 HOH TIP . E 4 HOH A 19 618 618 HOH TIP . E 4 HOH A 20 619 619 HOH TIP . E 4 HOH A 21 620 620 HOH TIP . E 4 HOH A 22 621 621 HOH TIP . E 4 HOH A 23 622 622 HOH TIP . E 4 HOH A 24 623 623 HOH TIP . E 4 HOH A 25 624 624 HOH TIP . E 4 HOH A 26 625 625 HOH TIP . E 4 HOH A 27 626 626 HOH TIP . E 4 HOH A 28 627 627 HOH TIP . E 4 HOH A 29 628 628 HOH TIP . E 4 HOH A 30 629 629 HOH TIP . E 4 HOH A 31 630 630 HOH HOH . E 4 HOH A 32 631 631 HOH HOH . E 4 HOH A 33 632 632 HOH HOH . E 4 HOH A 34 633 633 HOH HOH . E 4 HOH A 35 634 634 HOH HOH . E 4 HOH A 36 635 635 HOH HOH . E 4 HOH A 37 636 636 HOH HOH . E 4 HOH A 38 637 637 HOH HOH . E 4 HOH A 39 638 638 HOH HOH . E 4 HOH A 40 639 639 HOH HOH . E 4 HOH A 41 640 640 HOH HOH . E 4 HOH A 42 641 641 HOH HOH . E 4 HOH A 43 642 642 HOH HOH . E 4 HOH A 44 643 643 HOH HOH . E 4 HOH A 45 644 644 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 25.24 58.434 -9.938 1 31.25 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 26.369 58.565 -9.072 1 34.28 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 24.073 58.051 -9.097 1 36.57 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 25.121 59.73 -10.545 1 27.94 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 25.78 55.736 -10.807 1 28.48 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 25.169 55.321 -9.524 1 25.19 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 27.2 55.448 -10.634 1 25.72 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 25.707 57.3 -11.059 1 29.38 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 24.011 54.053 -12.248 1 29.66 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 24.077 52.894 -11.25 1 29.07 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 22.811 54.89 -12 1 29.1 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 25.332 54.945 -12.12 1 27.6 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 23.988 53.412 -13.769 1 30.17 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 23.728 54.241 -15.014 1 34.01 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 23.898 53.462 -16.098 1 37.42 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 23.155 52.186 -15.922 1 33.88 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 23.17 54.113 -17.312 1 37.82 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 23.699 55.302 -17.767 1 42.97 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 22.681 52.927 -18.192 1 37.77 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 23.725 52.677 -19.286 1 41.92 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 22.675 51.74 -17.221 1 34.99 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 21.4 51.289 -17.124 1 34.47 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 20.408 51.725 -16.231 1 32.01 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 19.314 51.063 -16.446 1 33.98 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 19.522 50.187 -17.458 1 33.75 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 18.725 49.243 -18.102 1 32.98 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 17.435 49.065 -17.735 1 33.1 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 19.276 48.48 -19.145 1 33.05 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 20.626 48.657 -19.545 1 33.43 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 21.432 49.571 -18.937 1 33.51 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 20.83 50.32 -17.887 1 32.87 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #