data_3EWR # _model_server_result.job_id TJmzdxVryoUKkryGEx0ffg _model_server_result.datetime_utc '2024-11-21 22:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ewr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":169}' # _entry.id 3EWR # _exptl.entry_id 3EWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EWR _cell.length_a 47.776 _cell.length_b 51.024 _cell.length_c 68.077 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 3EWR _atom_sites.fract_transf_matrix[1][1] 0.020931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR A 1 169 1 APR APR . C 3 HOH A 1 170 1 HOH HOH . C 3 HOH A 2 171 2 HOH HOH . C 3 HOH A 3 172 3 HOH HOH . C 3 HOH A 4 173 4 HOH HOH . C 3 HOH A 5 174 5 HOH HOH . C 3 HOH A 6 175 6 HOH HOH . C 3 HOH A 7 176 7 HOH HOH . C 3 HOH A 8 177 8 HOH HOH . C 3 HOH A 9 178 9 HOH HOH . C 3 HOH A 10 179 10 HOH HOH . C 3 HOH A 11 180 11 HOH HOH . C 3 HOH A 12 181 12 HOH HOH . C 3 HOH A 13 182 13 HOH HOH . C 3 HOH A 14 183 14 HOH HOH . C 3 HOH A 15 184 15 HOH HOH . C 3 HOH A 16 185 16 HOH HOH . C 3 HOH A 17 186 17 HOH HOH . C 3 HOH A 18 187 18 HOH HOH . C 3 HOH A 19 188 19 HOH HOH . C 3 HOH A 20 189 20 HOH HOH . C 3 HOH A 21 190 21 HOH HOH . C 3 HOH A 22 191 22 HOH HOH . C 3 HOH A 23 192 23 HOH HOH . C 3 HOH A 24 193 24 HOH HOH . C 3 HOH A 25 194 25 HOH HOH . C 3 HOH A 26 195 26 HOH HOH . C 3 HOH A 27 196 27 HOH HOH . C 3 HOH A 28 197 28 HOH HOH . C 3 HOH A 29 198 29 HOH HOH . C 3 HOH A 30 199 30 HOH HOH . C 3 HOH A 31 200 31 HOH HOH . C 3 HOH A 32 201 32 HOH HOH . C 3 HOH A 33 202 33 HOH HOH . C 3 HOH A 34 203 34 HOH HOH . C 3 HOH A 35 204 35 HOH HOH . C 3 HOH A 36 205 36 HOH HOH . C 3 HOH A 37 206 37 HOH HOH . C 3 HOH A 38 207 38 HOH HOH . C 3 HOH A 39 208 39 HOH HOH . C 3 HOH A 40 209 40 HOH HOH . C 3 HOH A 41 210 41 HOH HOH . C 3 HOH A 42 211 42 HOH HOH . C 3 HOH A 43 212 43 HOH HOH . C 3 HOH A 44 213 44 HOH HOH . C 3 HOH A 45 214 45 HOH HOH . C 3 HOH A 46 215 46 HOH HOH . C 3 HOH A 47 216 47 HOH HOH . C 3 HOH A 48 217 48 HOH HOH . C 3 HOH A 49 218 49 HOH HOH . C 3 HOH A 50 219 50 HOH HOH . C 3 HOH A 51 220 51 HOH HOH . C 3 HOH A 52 221 52 HOH HOH . C 3 HOH A 53 222 53 HOH HOH . C 3 HOH A 54 223 54 HOH HOH . C 3 HOH A 55 224 55 HOH HOH . C 3 HOH A 56 225 56 HOH HOH . C 3 HOH A 57 226 57 HOH HOH . C 3 HOH A 58 227 58 HOH HOH . C 3 HOH A 59 228 59 HOH HOH . C 3 HOH A 60 229 60 HOH HOH . C 3 HOH A 61 230 61 HOH HOH . C 3 HOH A 62 231 62 HOH HOH . C 3 HOH A 63 232 63 HOH HOH . C 3 HOH A 64 233 64 HOH HOH . C 3 HOH A 65 234 65 HOH HOH . C 3 HOH A 66 235 66 HOH HOH . C 3 HOH A 67 236 67 HOH HOH . C 3 HOH A 68 237 68 HOH HOH . C 3 HOH A 69 238 69 HOH HOH . C 3 HOH A 70 239 70 HOH HOH . C 3 HOH A 71 240 71 HOH HOH . C 3 HOH A 72 241 72 HOH HOH . C 3 HOH A 73 242 73 HOH HOH . C 3 HOH A 74 243 74 HOH HOH . C 3 HOH A 75 244 75 HOH HOH . C 3 HOH A 76 245 76 HOH HOH . C 3 HOH A 77 246 77 HOH HOH . C 3 HOH A 78 247 78 HOH HOH . C 3 HOH A 79 248 79 HOH HOH . C 3 HOH A 80 249 80 HOH HOH . C 3 HOH A 81 250 81 HOH HOH . C 3 HOH A 82 251 82 HOH HOH . C 3 HOH A 83 252 83 HOH HOH . C 3 HOH A 84 253 84 HOH HOH . C 3 HOH A 85 254 85 HOH HOH . C 3 HOH A 86 255 86 HOH HOH . C 3 HOH A 87 256 87 HOH HOH . C 3 HOH A 88 257 88 HOH HOH . C 3 HOH A 89 258 89 HOH HOH . C 3 HOH A 90 259 90 HOH HOH . C 3 HOH A 91 260 91 HOH HOH . C 3 HOH A 92 261 92 HOH HOH . C 3 HOH A 93 262 93 HOH HOH . C 3 HOH A 94 263 94 HOH HOH . C 3 HOH A 95 264 95 HOH HOH . C 3 HOH A 96 265 96 HOH HOH . C 3 HOH A 97 266 97 HOH HOH . C 3 HOH A 98 267 98 HOH HOH . C 3 HOH A 99 268 99 HOH HOH . C 3 HOH A 100 269 100 HOH HOH . C 3 HOH A 101 270 101 HOH HOH . C 3 HOH A 102 271 102 HOH HOH . C 3 HOH A 103 272 103 HOH HOH . C 3 HOH A 104 273 104 HOH HOH . C 3 HOH A 105 274 105 HOH HOH . C 3 HOH A 106 275 106 HOH HOH . C 3 HOH A 107 276 107 HOH HOH . C 3 HOH A 108 277 108 HOH HOH . C 3 HOH A 109 278 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . B 2 14.069 -3.284 9.637 1 28.96 ? N1 APR 169 A 1 HETATM 2 C C2 APR . . . B 2 13.058 -2.38 9.745 1 29.22 ? C2 APR 169 A 1 HETATM 3 N N3 APR . . . B 2 12.291 -2.238 10.851 1 26.53 ? N3 APR 169 A 1 HETATM 4 C C4 APR . . . B 2 12.505 -3.007 11.965 1 29.6 ? C4 APR 169 A 1 HETATM 5 C C5 APR . . . B 2 13.58 -4.028 11.915 1 28.66 ? C5 APR 169 A 1 HETATM 6 C C6 APR . . . B 2 14.371 -4.133 10.657 1 30.77 ? C6 APR 169 A 1 HETATM 7 N N6 APR . . . B 2 15.377 -5.044 10.56 1 29.15 ? N6 APR 169 A 1 HETATM 8 N N7 APR . . . B 2 13.613 -4.655 13.114 1 29.01 ? N7 APR 169 A 1 HETATM 9 C C8 APR . . . B 2 12.637 -4.128 13.872 1 29.74 ? C8 APR 169 A 1 HETATM 10 N N9 APR . . . B 2 11.967 -3.158 13.19 1 30.76 ? N9 APR 169 A 1 HETATM 11 C C1' APR . . . B 2 10.872 -2.478 13.93 1 30.96 ? C1' APR 169 A 1 HETATM 12 C C2' APR . . . B 2 9.44 -2.905 13.655 1 34.25 ? C2' APR 169 A 1 HETATM 13 O O2' APR . . . B 2 9.049 -4.265 13.961 1 31.63 ? O2' APR 169 A 1 HETATM 14 C C3' APR . . . B 2 8.741 -1.911 14.548 1 29.83 ? C3' APR 169 A 1 HETATM 15 O O3' APR . . . B 2 7.668 -1.49 13.721 1 33.29 ? O3' APR 169 A 1 HETATM 16 O O4' APR . . . B 2 10.9 -1.047 14.027 1 28.12 ? O4' APR 169 A 1 HETATM 17 C C4' APR . . . B 2 9.71 -0.731 14.753 1 30.34 ? C4' APR 169 A 1 HETATM 18 C C5' APR . . . B 2 10.003 -0.415 16.229 1 31.44 ? C5' APR 169 A 1 HETATM 19 O O5' APR . . . B 2 10.577 -1.558 16.906 1 32.17 ? O5' APR 169 A 1 HETATM 20 P PA APR . . . B 2 11.907 -1.568 17.831 1 31.02 ? PA APR 169 A 1 HETATM 21 O O1A APR . . . B 2 13.171 -1.373 17.006 1 30.37 ? O1A APR 169 A 1 HETATM 22 O O2A APR . . . B 2 11.893 -2.836 18.657 1 30.98 ? O2A APR 169 A 1 HETATM 23 O O3A APR . . . B 2 11.81 -0.248 18.771 1 28.64 ? O3A APR 169 A 1 HETATM 24 P PB APR . . . B 2 11.074 0.075 20.189 1 24.69 ? PB APR 169 A 1 HETATM 25 O O1B APR . . . B 2 10.946 1.587 20.188 1 27.91 ? O1B APR 169 A 1 HETATM 26 O O2B APR . . . B 2 9.925 -0.866 20.356 1 24.45 ? O2B APR 169 A 1 HETATM 27 O O5D APR . . . B 2 12.187 -0.333 21.238 1 26.07 ? O5D APR 169 A 1 HETATM 28 C C5D APR . . . B 2 13.436 0.404 21.231 1 29.83 ? C5D APR 169 A 1 HETATM 29 O O4D APR . . . B 2 14.922 -1.485 20.806 1 33.69 ? O4D APR 169 A 1 HETATM 30 O O1D APR . . . B 2 17.089 -2.249 20.698 1 33.32 ? O1D APR 169 A 1 HETATM 31 C C1D APR . . . B 2 16.212 -1.218 20.228 1 35.43 ? C1D APR 169 A 1 HETATM 32 O O2D APR . . . B 2 18.065 0.278 20.897 1 32.68 ? O2D APR 169 A 1 HETATM 33 C C2D APR . . . B 2 16.647 0.177 20.71 1 33.95 ? C2D APR 169 A 1 HETATM 34 O O3D APR . . . B 2 16.482 -0.199 23.142 1 33.55 ? O3D APR 169 A 1 HETATM 35 C C3D APR . . . B 2 15.841 0.394 21.993 1 34.29 ? C3D APR 169 A 1 HETATM 36 C C4D APR . . . B 2 14.587 -0.445 21.749 1 31 ? C4D APR 169 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #