data_3EWT # _model_server_result.job_id i6RQXQYp798dx7OYNNuWcw _model_server_result.datetime_utc '2024-12-02 17:21:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ewt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 3EWT # _exptl.entry_id 3EWT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EWT _cell.length_a 40.062 _cell.length_b 40.062 _cell.length_c 174.431 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 26 A ASP 20 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 A OD1 ASP 28 A ASP 22 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A OD1 ASP 30 A ASP 24 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 A O THR 32 A THR 26 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 A OE1 GLU 37 A GLU 31 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc6 A OE2 GLU 37 A GLU 31 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc7 A OD1 ASP 62 A ASP 56 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 A OD1 ASP 64 A ASP 58 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc9 A OD1 ASN 66 A ASN 60 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc10 A O THR 68 A THR 62 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc11 A OE1 GLU 73 A GLU 67 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc12 A OE2 GLU 73 A GLU 67 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc13 A OD1 ASP 99 A ASP 93 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc14 A OD1 ASP 101 A ASP 95 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc15 A OD1 ASN 103 A ASN 97 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc16 A O TYR 105 A TYR 99 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc17 A OE1 GLU 110 A GLU 104 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc18 A OE2 GLU 110 A GLU 104 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc19 A OD1 ASP 135 A ASP 129 1_555 F CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc20 A OD1 ASP 137 A ASP 131 1_555 F CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc21 A OD2 ASP 139 A ASP 133 1_555 F CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc22 A O GLN 141 A GLN 135 1_555 F CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc23 A OE1 GLU 146 A GLU 140 1_555 F CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc24 A OE2 GLU 146 A GLU 140 1_555 F CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc25 C CA CA . A CA 601 1_555 G O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc26 D CA CA . A CA 602 1_555 G O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc27 E CA CA . A CA 603 1_555 G O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc28 F CA CA . A CA 604 1_555 G O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EWT _atom_sites.fract_transf_matrix[1][1] 0.024961 _atom_sites.fract_transf_matrix[1][2] 0.014411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 601 601 CA CA . D 3 CA A 1 602 602 CA CA . E 3 CA A 1 603 603 CA CA . F 3 CA A 1 604 604 CA CA . G 4 HOH A 1 605 1 HOH HOH . G 4 HOH A 2 606 2 HOH HOH . G 4 HOH A 3 607 3 HOH HOH . G 4 HOH A 4 608 4 HOH HOH . G 4 HOH A 5 609 5 HOH HOH . G 4 HOH A 6 610 6 HOH HOH . G 4 HOH A 7 611 8 HOH HOH . G 4 HOH A 8 612 9 HOH HOH . G 4 HOH A 9 613 10 HOH HOH . G 4 HOH A 10 614 11 HOH HOH . G 4 HOH A 11 615 13 HOH HOH . G 4 HOH A 12 616 14 HOH HOH . G 4 HOH A 13 617 15 HOH HOH . G 4 HOH A 14 618 16 HOH HOH . G 4 HOH A 15 619 17 HOH HOH . G 4 HOH A 16 620 18 HOH HOH . G 4 HOH A 17 621 19 HOH HOH . G 4 HOH A 18 622 20 HOH HOH . G 4 HOH A 19 623 21 HOH HOH . G 4 HOH A 20 624 22 HOH HOH . G 4 HOH A 21 625 23 HOH HOH . G 4 HOH A 22 626 24 HOH HOH . G 4 HOH A 23 627 25 HOH HOH . G 4 HOH A 24 628 26 HOH HOH . G 4 HOH A 25 629 27 HOH HOH . G 4 HOH A 26 630 28 HOH HOH . G 4 HOH A 27 631 29 HOH HOH . G 4 HOH A 28 632 30 HOH HOH . G 4 HOH A 29 633 31 HOH HOH . G 4 HOH A 30 634 32 HOH HOH . G 4 HOH A 31 635 33 HOH HOH . G 4 HOH A 32 636 34 HOH HOH . G 4 HOH A 33 637 35 HOH HOH . G 4 HOH A 34 638 36 HOH HOH . G 4 HOH A 35 639 37 HOH HOH . G 4 HOH A 36 640 38 HOH HOH . G 4 HOH A 37 641 39 HOH HOH . G 4 HOH A 38 642 40 HOH HOH . G 4 HOH A 39 643 41 HOH HOH . G 4 HOH A 40 644 42 HOH HOH . G 4 HOH A 41 645 43 HOH HOH . G 4 HOH A 42 646 44 HOH HOH . H 4 HOH E 1 7 7 HOH HOH . H 4 HOH E 2 12 12 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.271 _atom_site.Cartn_y 30.833 _atom_site.Cartn_z 53.819 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #