data_3EXF # _model_server_result.job_id vsBBDVVAVVv84pO8ikD1DQ _model_server_result.datetime_utc '2025-06-28 13:03:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3exf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1002}' # _entry.id 3EXF # _exptl.entry_id 3EXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.15 _cell.angle_gamma 90 _cell.entry_id 3EXF _cell.length_a 103.389 _cell.length_b 129.668 _cell.length_c 144.946 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,U,V,W 1 1 E,F,G,H,O,P,Q,R,S,T,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 N N N ? 5 Q N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 188 A ASP 167 1_555 I MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc2 A OD1 ASN 217 A ASN 196 1_555 I MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc3 A O TYR 219 A TYR 198 1_555 I MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 I MG MG . A MG 1001 1_555 J O1B TPP . A TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc5 I MG MG . A MG 1001 1_555 J O2A TPP . A TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc6 B O ALA 160 B ALA 160 1_555 K K K . B K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc7 B O ILE 161 B ILE 161 1_555 K K K . B K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc8 B O ASP 163 B ASP 163 1_555 K K K . B K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc9 C OD2 ASP 188 C ASP 167 1_555 L MG MG . C MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc10 C OD1 ASN 217 C ASN 196 1_555 L MG MG . C MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc11 C O TYR 219 C TYR 198 1_555 L MG MG . C MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc12 L MG MG . C MG 1004 1_555 M O1B TPP . C TPP 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc13 L MG MG . C MG 1004 1_555 M O2A TPP . C TPP 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc14 L MG MG . C MG 1004 1_555 V O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc15 D O ILE 161 D ILE 161 1_555 N K K . D K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc16 E OD2 ASP 188 E ASP 167 1_555 O MG MG . E MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc17 E O TYR 219 E TYR 198 1_555 O MG MG . E MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc18 O MG MG . E MG 1007 1_555 P O2A TPP . E TPP 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc19 O MG MG . E MG 1007 1_555 P O1B TPP . E TPP 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc20 F O ILE 161 F ILE 161 1_555 Q K K . F K 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc21 F O ASP 163 F ASP 163 1_555 Q K K . F K 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc22 G OD2 ASP 188 G ASP 167 1_555 R MG MG . G MG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc23 G OD1 ASN 217 G ASN 196 1_555 R MG MG . G MG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc24 G O TYR 219 G TYR 198 1_555 R MG MG . G MG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc25 R MG MG . G MG 1010 1_555 S O2A TPP . G TPP 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc26 R MG MG . G MG 1010 1_555 S O1B TPP . G TPP 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc27 H O ASP 163 H ASP 163 1_555 T K K . H K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EXF _atom_sites.fract_transf_matrix[1][1] 0.009672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003359 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MG A 1 1001 1001 MG MG . J 4 TPP A 1 1003 1003 TPP TPP . K 5 K B 1 1005 1005 K K . L 3 MG C 1 1004 1004 MG MG . M 4 TPP C 1 1006 1006 TPP TPP . N 5 K D 1 1002 1002 K K . O 3 MG E 1 1007 1007 MG MG . P 4 TPP E 1 1009 1009 TPP TPP . Q 5 K F 1 1011 1011 K K . R 3 MG G 1 1010 1010 MG MG . S 4 TPP G 1 1012 1012 TPP TPP . T 5 K H 1 1008 1008 K K . U 6 HOH B 1 2004 2004 HOH HOH . V 6 HOH C 1 2002 2002 HOH HOH . V 6 HOH C 2 2006 2006 HOH HOH . V 6 HOH C 3 2009 2009 HOH HOH . W 6 HOH D 1 2001 2001 HOH HOH . X 6 HOH E 1 2007 2007 HOH HOH . Y 6 HOH F 1 2005 2005 HOH HOH . Y 6 HOH F 2 2008 2008 HOH HOH . Z 6 HOH H 1 2003 2003 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 5 _atom_site.Cartn_x -23.327 _atom_site.Cartn_y -2.169 _atom_site.Cartn_z 14.587 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #