data_3EXL # _model_server_result.job_id rgJ4sUHy2ifxYD5ltYfgyw _model_server_result.datetime_utc '2024-11-14 04:54:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3exl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":585}' # _entry.id 3EXL # _exptl.entry_id 3EXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.18 _cell.angle_gamma 90 _cell.entry_id 3EXL _cell.length_a 109.418 _cell.length_b 68.103 _cell.length_c 34.428 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -8.433792 0 33.37901 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -8.433792 0 33.37901 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A SG CYS 78 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A ND1 HIS 81 A HIS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A SG CYS 140 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A SG CYS 144 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? hydrog WATSON-CRICK hydrog1 B N3 DT 6 C DT 18 1_555 C N1 DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 6 C DT 18 1_555 C N6 DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 7 C DG 19 1_555 C N3 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 7 C DG 19 1_555 C O2 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 7 C DG 19 1_555 C N4 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 8 C DC 20 1_555 C N1 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 8 C DC 20 1_555 C O6 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 8 C DC 20 1_555 C N2 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DT 9 C DT 21 1_555 C N1 DA 4 D DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 DT 9 C DT 21 1_555 C N6 DA 4 D DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 10 C DC 22 1_555 C N1 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 10 C DC 22 1_555 C O6 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 10 C DC 22 1_555 C N2 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 232 n n CAC OA1 FLC doub 233 n n CAC OA2 FLC sing 234 n n CA CB FLC sing 235 n n CA HA1 FLC sing 236 n n CA HA2 FLC sing 237 n n CB CBC FLC sing 238 n n CB CG FLC sing 239 n n CB OHB FLC sing 240 n n CBC OB1 FLC doub 241 n n CBC OB2 FLC sing 242 n n CG CGC FLC sing 243 n n CG HG1 FLC sing 244 n n CG HG2 FLC sing 245 n n CGC OG1 FLC doub 246 n n CGC OG2 FLC sing 247 n n OHB HOB FLC sing 248 n n # _atom_sites.entry_id 3EXL _atom_sites.fract_transf_matrix[1][1] 0.009139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FLC A 1 585 585 FLC FLC . E 5 ZN A 1 1 1 ZN ZN . F 6 HOH A 1 2 2 HOH HOH . F 6 HOH A 2 3 3 HOH HOH . F 6 HOH A 3 4 4 HOH HOH . F 6 HOH A 4 5 5 HOH HOH . F 6 HOH A 5 6 6 HOH HOH . F 6 HOH A 6 7 7 HOH HOH . F 6 HOH A 7 8 8 HOH HOH . F 6 HOH A 8 9 9 HOH HOH . F 6 HOH A 9 10 10 HOH HOH . F 6 HOH A 10 11 11 HOH HOH . F 6 HOH A 11 12 12 HOH HOH . F 6 HOH A 12 13 13 HOH HOH . F 6 HOH A 13 14 14 HOH HOH . F 6 HOH A 14 15 15 HOH HOH . F 6 HOH A 15 16 16 HOH HOH . F 6 HOH A 16 17 17 HOH HOH . F 6 HOH A 17 18 18 HOH HOH . F 6 HOH A 18 19 19 HOH HOH . F 6 HOH A 19 20 20 HOH HOH . F 6 HOH A 20 21 21 HOH HOH . F 6 HOH A 21 22 22 HOH HOH . F 6 HOH A 22 23 23 HOH HOH . F 6 HOH A 23 24 24 HOH HOH . F 6 HOH A 24 25 25 HOH HOH . F 6 HOH A 25 26 26 HOH HOH . F 6 HOH A 26 27 27 HOH HOH . F 6 HOH A 27 28 28 HOH HOH . F 6 HOH A 28 29 29 HOH HOH . F 6 HOH A 29 30 30 HOH HOH . F 6 HOH A 30 31 31 HOH HOH . F 6 HOH A 31 32 32 HOH HOH . F 6 HOH A 32 33 33 HOH HOH . F 6 HOH A 33 34 34 HOH HOH . F 6 HOH A 34 35 35 HOH HOH . F 6 HOH A 35 36 36 HOH HOH . F 6 HOH A 36 37 37 HOH HOH . F 6 HOH A 37 38 38 HOH HOH . F 6 HOH A 38 39 39 HOH HOH . F 6 HOH A 39 40 40 HOH HOH . F 6 HOH A 40 41 41 HOH HOH . F 6 HOH A 41 42 42 HOH HOH . F 6 HOH A 42 43 43 HOH HOH . F 6 HOH A 43 44 44 HOH HOH . F 6 HOH A 44 45 45 HOH HOH . F 6 HOH A 45 46 46 HOH HOH . F 6 HOH A 46 47 47 HOH HOH . F 6 HOH A 47 48 48 HOH HOH . F 6 HOH A 48 49 49 HOH HOH . F 6 HOH A 49 50 50 HOH HOH . F 6 HOH A 50 51 51 HOH HOH . F 6 HOH A 51 52 52 HOH HOH . F 6 HOH A 52 53 53 HOH HOH . F 6 HOH A 53 54 54 HOH HOH . F 6 HOH A 54 55 55 HOH HOH . F 6 HOH A 55 56 56 HOH HOH . F 6 HOH A 56 57 57 HOH HOH . F 6 HOH A 57 59 59 HOH HOH . F 6 HOH A 58 60 60 HOH HOH . F 6 HOH A 59 61 61 HOH HOH . F 6 HOH A 60 62 62 HOH HOH . F 6 HOH A 61 63 63 HOH HOH . F 6 HOH A 62 64 64 HOH HOH . F 6 HOH A 63 65 65 HOH HOH . F 6 HOH A 64 66 66 HOH HOH . F 6 HOH A 65 67 67 HOH HOH . F 6 HOH A 66 68 68 HOH HOH . F 6 HOH A 67 69 69 HOH HOH . F 6 HOH A 68 70 70 HOH HOH . F 6 HOH A 69 71 71 HOH HOH . F 6 HOH A 70 72 72 HOH HOH . F 6 HOH A 71 73 73 HOH HOH . F 6 HOH A 72 74 74 HOH HOH . F 6 HOH A 73 75 75 HOH HOH . F 6 HOH A 74 76 76 HOH HOH . F 6 HOH A 75 77 77 HOH HOH . F 6 HOH A 76 78 78 HOH HOH . F 6 HOH A 77 79 79 HOH HOH . F 6 HOH A 78 80 80 HOH HOH . F 6 HOH A 79 81 81 HOH HOH . F 6 HOH A 80 82 82 HOH HOH . F 6 HOH A 81 83 83 HOH HOH . F 6 HOH A 82 84 84 HOH HOH . F 6 HOH A 83 85 85 HOH HOH . F 6 HOH A 84 86 86 HOH HOH . F 6 HOH A 85 87 87 HOH HOH . F 6 HOH A 86 88 88 HOH HOH . F 6 HOH A 87 89 89 HOH HOH . F 6 HOH A 88 90 90 HOH HOH . F 6 HOH A 89 91 91 HOH HOH . F 6 HOH A 90 92 92 HOH HOH . F 6 HOH A 91 93 93 HOH HOH . F 6 HOH A 92 94 94 HOH HOH . F 6 HOH A 93 95 95 HOH HOH . F 6 HOH A 94 294 294 HOH HOH . F 6 HOH A 95 295 295 HOH HOH . F 6 HOH A 96 296 296 HOH HOH . F 6 HOH A 97 297 297 HOH HOH . F 6 HOH A 98 298 298 HOH HOH . F 6 HOH A 99 299 299 HOH HOH . F 6 HOH A 100 300 300 HOH HOH . F 6 HOH A 101 301 301 HOH HOH . F 6 HOH A 102 302 302 HOH HOH . F 6 HOH A 103 303 303 HOH HOH . F 6 HOH A 104 304 304 HOH HOH . F 6 HOH A 105 305 305 HOH HOH . F 6 HOH A 106 306 306 HOH HOH . F 6 HOH A 107 307 307 HOH HOH . F 6 HOH A 108 308 308 HOH HOH . F 6 HOH A 109 309 309 HOH HOH . F 6 HOH A 110 310 310 HOH HOH . F 6 HOH A 111 311 311 HOH HOH . F 6 HOH A 112 312 312 HOH HOH . F 6 HOH A 113 313 313 HOH HOH . F 6 HOH A 114 314 314 HOH HOH . F 6 HOH A 115 315 315 HOH HOH . F 6 HOH A 116 316 316 HOH HOH . F 6 HOH A 117 317 317 HOH HOH . F 6 HOH A 118 318 318 HOH HOH . F 6 HOH A 119 319 319 HOH HOH . F 6 HOH A 120 320 320 HOH HOH . F 6 HOH A 121 321 321 HOH HOH . F 6 HOH A 122 322 322 HOH HOH . F 6 HOH A 123 323 323 HOH HOH . F 6 HOH A 124 324 324 HOH HOH . F 6 HOH A 125 325 325 HOH HOH . F 6 HOH A 126 326 326 HOH HOH . F 6 HOH A 127 327 327 HOH HOH . F 6 HOH A 128 328 328 HOH HOH . F 6 HOH A 129 329 329 HOH HOH . F 6 HOH A 130 330 330 HOH HOH . F 6 HOH A 131 331 331 HOH HOH . F 6 HOH A 132 332 332 HOH HOH . F 6 HOH A 133 333 333 HOH HOH . F 6 HOH A 134 334 334 HOH HOH . F 6 HOH A 135 335 335 HOH HOH . F 6 HOH A 136 336 336 HOH HOH . F 6 HOH A 137 337 337 HOH HOH . F 6 HOH A 138 338 338 HOH HOH . F 6 HOH A 139 339 339 HOH HOH . F 6 HOH A 140 340 340 HOH HOH . F 6 HOH A 141 341 341 HOH HOH . F 6 HOH A 142 342 342 HOH HOH . F 6 HOH A 143 343 343 HOH HOH . F 6 HOH A 144 344 344 HOH HOH . F 6 HOH A 145 345 345 HOH HOH . F 6 HOH A 146 346 346 HOH HOH . F 6 HOH A 147 347 347 HOH HOH . F 6 HOH A 148 348 348 HOH HOH . F 6 HOH A 149 350 350 HOH HOH . F 6 HOH A 150 351 351 HOH HOH . F 6 HOH A 151 352 352 HOH HOH . F 6 HOH A 152 353 353 HOH HOH . F 6 HOH A 153 354 354 HOH HOH . F 6 HOH A 154 355 355 HOH HOH . F 6 HOH A 155 356 356 HOH HOH . F 6 HOH A 156 357 357 HOH HOH . F 6 HOH A 157 358 358 HOH HOH . G 6 HOH C 1 58 58 HOH HOH . G 6 HOH C 2 150 150 HOH HOH . G 6 HOH C 3 349 349 HOH HOH . H 6 HOH D 1 151 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . D 4 17.629 -27.087 24.015 1 68.05 ? CAC FLC 585 A 1 HETATM 2 C CA FLC . . . D 4 16.17 -26.651 23.975 1 65.96 ? CA FLC 585 A 1 HETATM 3 C CB FLC . . . D 4 15.886 -25.212 24.492 1 63.82 ? CB FLC 585 A 1 HETATM 4 C CBC FLC . . . D 4 16.598 -24.158 23.603 1 63.95 ? CBC FLC 585 A 1 HETATM 5 C CG FLC . . . D 4 14.368 -25.011 24.413 1 62.51 ? CG FLC 585 A 1 HETATM 6 C CGC FLC . . . D 4 13.893 -23.669 24.926 1 62.28 ? CGC FLC 585 A 1 HETATM 7 O OA1 FLC . . . D 4 18.516 -26.352 24.433 1 69.83 ? OA1 FLC 585 A 1 HETATM 8 O OA2 FLC . . . D 4 17.914 -28.203 23.629 1 69.42 ? OA2 FLC 585 A 1 HETATM 9 O OB1 FLC . . . D 4 17.442 -23.345 24.114 1 62.44 ? OB1 FLC 585 A 1 HETATM 10 O OB2 FLC . . . D 4 16.339 -24.08 22.354 1 63.32 ? OB2 FLC 585 A 1 HETATM 11 O OG1 FLC . . . D 4 14.668 -22.831 25.373 1 61.31 ? OG1 FLC 585 A 1 HETATM 12 O OG2 FLC . . . D 4 12.712 -23.43 24.897 1 64.23 ? OG2 FLC 585 A 1 HETATM 13 O OHB FLC . . . D 4 16.328 -25.096 25.851 1 64.44 ? OHB FLC 585 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 13 #