data_3EXX # _model_server_result.job_id KPcEmDndkM3cKvMI3_xwxw _model_server_result.datetime_utc '2024-11-09 02:21:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3exx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":32}' # _entry.id 3EXX # _exptl.entry_id 3EXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EXX _cell.length_a 81.411 _cell.length_b 81.411 _cell.length_c 33.752 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.193 ? disulf ? disulf5 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 A N LEU 13 A LEU 13 1_555 F NA NA . B NA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc2 B O VAL 2 B VAL 2 1_555 F NA NA . B NA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc3 B NE2 HIS 10 B HIS 10 1_555 E NI NI . B NI 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc4 E NI NI . B NI 31 1_555 J O HOH . B HOH 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 F NA NA . B NA 32 1_555 J O HOH . B HOH 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc6 D NE2 HIS 10 D HIS 10 1_555 G NI NI . D NI 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 D O PHE 25 D PHE 25 1_555 H NA NA . D NA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc8 D N THR 27 D THR 27 1_555 H NA NA . D NA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc9 G NI NI . D NI 31 1_555 L O HOH . D HOH 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc10 H NA NA . D NA 32 1_555 L O HOH . D HOH 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EXX _atom_sites.fract_transf_matrix[1][1] 0.012283 _atom_sites.fract_transf_matrix[1][2] 0.007092 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NI B 1 31 1 NI NI . F 4 NA B 1 32 1 NA NA . G 3 NI D 1 31 1 NI NI . H 4 NA D 1 32 1 NA NA . I 5 HOH A 1 22 4 HOH HOH . I 5 HOH A 2 23 6 HOH HOH . I 5 HOH A 3 24 7 HOH HOH . I 5 HOH A 4 25 10 HOH HOH . I 5 HOH A 5 26 22 HOH HOH . I 5 HOH A 6 27 26 HOH HOH . I 5 HOH A 7 28 38 HOH HOH . I 5 HOH A 8 29 39 HOH HOH . I 5 HOH A 9 30 47 HOH HOH . I 5 HOH A 10 31 48 HOH HOH . I 5 HOH A 11 32 50 HOH HOH . I 5 HOH A 12 33 52 HOH HOH . I 5 HOH A 13 34 54 HOH HOH . I 5 HOH A 14 35 55 HOH HOH . I 5 HOH A 15 36 57 HOH HOH . I 5 HOH A 16 37 58 HOH HOH . I 5 HOH A 17 38 61 HOH HOH . I 5 HOH A 18 39 67 HOH HOH . I 5 HOH A 19 40 71 HOH HOH . I 5 HOH A 20 41 76 HOH HOH . I 5 HOH A 21 42 81 HOH HOH . I 5 HOH A 22 43 96 HOH HOH . I 5 HOH A 23 44 104 HOH HOH . I 5 HOH A 24 45 117 HOH HOH . I 5 HOH A 25 46 120 HOH HOH . I 5 HOH A 26 47 127 HOH HOH . I 5 HOH A 27 48 136 HOH HOH . I 5 HOH A 28 49 161 HOH HOH . I 5 HOH A 29 50 191 HOH HOH . J 5 HOH B 1 33 3 HOH HOH . J 5 HOH B 2 34 5 HOH HOH . J 5 HOH B 3 35 9 HOH HOH . J 5 HOH B 4 36 12 HOH HOH . J 5 HOH B 5 37 16 HOH HOH . J 5 HOH B 6 38 18 HOH HOH . J 5 HOH B 7 39 20 HOH HOH . J 5 HOH B 8 40 23 HOH HOH . J 5 HOH B 9 41 27 HOH HOH . J 5 HOH B 10 42 30 HOH HOH . J 5 HOH B 11 43 33 HOH HOH . J 5 HOH B 12 44 36 HOH HOH . J 5 HOH B 13 45 37 HOH HOH . J 5 HOH B 14 46 40 HOH HOH . J 5 HOH B 15 47 41 HOH HOH . J 5 HOH B 16 48 43 HOH HOH . J 5 HOH B 17 49 45 HOH HOH . J 5 HOH B 18 50 49 HOH HOH . J 5 HOH B 19 51 53 HOH HOH . J 5 HOH B 20 52 59 HOH HOH . J 5 HOH B 21 53 69 HOH HOH . J 5 HOH B 22 54 70 HOH HOH . J 5 HOH B 23 55 75 HOH HOH . J 5 HOH B 24 56 77 HOH HOH . J 5 HOH B 25 57 79 HOH HOH . J 5 HOH B 26 58 83 HOH HOH . J 5 HOH B 27 59 91 HOH HOH . J 5 HOH B 28 60 95 HOH HOH . J 5 HOH B 29 61 98 HOH HOH . J 5 HOH B 30 62 99 HOH HOH . J 5 HOH B 31 63 103 HOH HOH . J 5 HOH B 32 64 110 HOH HOH . J 5 HOH B 33 65 118 HOH HOH . J 5 HOH B 34 66 124 HOH HOH . J 5 HOH B 35 67 132 HOH HOH . J 5 HOH B 36 68 137 HOH HOH . J 5 HOH B 37 69 143 HOH HOH . J 5 HOH B 38 70 149 HOH HOH . J 5 HOH B 39 71 154 HOH HOH . J 5 HOH B 40 72 167 HOH HOH . J 5 HOH B 41 73 169 HOH HOH . J 5 HOH B 42 74 170 HOH HOH . J 5 HOH B 43 75 171 HOH HOH . J 5 HOH B 44 76 178 HOH HOH . J 5 HOH B 45 77 179 HOH HOH . J 5 HOH B 46 78 180 HOH HOH . J 5 HOH B 47 79 181 HOH HOH . J 5 HOH B 48 80 183 HOH HOH . J 5 HOH B 49 81 184 HOH HOH . J 5 HOH B 50 82 192 HOH HOH . J 5 HOH B 51 83 193 HOH HOH . J 5 HOH B 52 84 196 HOH HOH . J 5 HOH B 53 85 204 HOH HOH . J 5 HOH B 54 86 205 HOH HOH . J 5 HOH B 55 87 207 HOH HOH . K 5 HOH C 1 22 8 HOH HOH . K 5 HOH C 2 23 14 HOH HOH . K 5 HOH C 3 24 34 HOH HOH . K 5 HOH C 4 25 42 HOH HOH . K 5 HOH C 5 26 46 HOH HOH . K 5 HOH C 6 27 56 HOH HOH . K 5 HOH C 7 28 64 HOH HOH . K 5 HOH C 8 29 66 HOH HOH . K 5 HOH C 9 30 72 HOH HOH . K 5 HOH C 10 31 73 HOH HOH . K 5 HOH C 11 32 78 HOH HOH . K 5 HOH C 12 33 80 HOH HOH . K 5 HOH C 13 34 84 HOH HOH . K 5 HOH C 14 35 102 HOH HOH . K 5 HOH C 15 36 114 HOH HOH . K 5 HOH C 16 37 116 HOH HOH . K 5 HOH C 17 38 121 HOH HOH . K 5 HOH C 18 39 126 HOH HOH . K 5 HOH C 19 40 130 HOH HOH . K 5 HOH C 20 41 146 HOH HOH . K 5 HOH C 21 42 173 HOH HOH . K 5 HOH C 22 43 175 HOH HOH . K 5 HOH C 23 44 197 HOH HOH . L 5 HOH D 1 33 11 HOH HOH . L 5 HOH D 2 34 13 HOH HOH . L 5 HOH D 3 35 15 HOH HOH . L 5 HOH D 4 36 17 HOH HOH . L 5 HOH D 5 37 19 HOH HOH . L 5 HOH D 6 38 21 HOH HOH . L 5 HOH D 7 39 24 HOH HOH . L 5 HOH D 8 40 25 HOH HOH . L 5 HOH D 9 41 28 HOH HOH . L 5 HOH D 10 42 29 HOH HOH . L 5 HOH D 11 43 31 HOH HOH . L 5 HOH D 12 44 32 HOH HOH . L 5 HOH D 13 45 35 HOH HOH . L 5 HOH D 14 46 44 HOH HOH . L 5 HOH D 15 47 51 HOH HOH . L 5 HOH D 16 48 60 HOH HOH . L 5 HOH D 17 49 63 HOH HOH . L 5 HOH D 18 50 65 HOH HOH . L 5 HOH D 19 51 68 HOH HOH . L 5 HOH D 20 52 74 HOH HOH . L 5 HOH D 21 53 85 HOH HOH . L 5 HOH D 22 54 87 HOH HOH . L 5 HOH D 23 55 88 HOH HOH . L 5 HOH D 24 56 90 HOH HOH . L 5 HOH D 25 57 92 HOH HOH . L 5 HOH D 26 58 97 HOH HOH . L 5 HOH D 27 59 101 HOH HOH . L 5 HOH D 28 60 105 HOH HOH . L 5 HOH D 29 61 106 HOH HOH . L 5 HOH D 30 62 111 HOH HOH . L 5 HOH D 31 63 113 HOH HOH . L 5 HOH D 32 64 115 HOH HOH . L 5 HOH D 33 65 123 HOH HOH . L 5 HOH D 34 66 133 HOH HOH . L 5 HOH D 35 67 155 HOH HOH . L 5 HOH D 36 68 157 HOH HOH . L 5 HOH D 37 69 163 HOH HOH . L 5 HOH D 38 70 176 HOH HOH . L 5 HOH D 39 71 182 HOH HOH . L 5 HOH D 40 72 186 HOH HOH . L 5 HOH D 41 73 195 HOH HOH . L 5 HOH D 42 74 198 HOH HOH . L 5 HOH D 43 75 203 HOH HOH . L 5 HOH D 44 76 206 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -18.373 _atom_site.Cartn_y 4.579 _atom_site.Cartn_z 5.968 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 32 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #