data_3EXX
#
_model_server_result.job_id            334jk1BrQjeIB_tMLLifEA 
_model_server_result.datetime_utc      '2024-11-09 02:39:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3exx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":32}' 
#
_entry.id    3EXX 
#
_exptl.entry_id    3EXX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EXX 
_cell.length_a            81.411 
_cell.length_b            81.411 
_cell.length_c            33.752 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EXX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.193 ? 
disulf ? disulf5 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf7 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc1 A N LEU 13 A LEU 13 1_555 F NA NA . B NA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc2 B O VAL 2 B VAL 2 1_555 F NA NA . B NA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? 
metalc ? metalc3 B NE2 HIS 10 B HIS 10 1_555 E NI NI . B NI 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc4 E NI NI . B NI 31 1_555 J O HOH . B HOH 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc5 F NA NA . B NA 32 1_555 J O HOH . B HOH 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc6 D NE2 HIS 10 D HIS 10 1_555 G NI NI . D NI 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc7 D O PHE 25 D PHE 25 1_555 H NA NA . D NA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc8 D N THR 27 D THR 27 1_555 H NA NA . D NA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? 
metalc ? metalc9 G NI NI . D NI 31 1_555 L O HOH . D HOH 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc10 H NA NA . D NA 32 1_555 L O HOH . D HOH 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3EXX 
_atom_sites.fract_transf_matrix[1][1]    0.012283 
_atom_sites.fract_transf_matrix[1][2]    0.007092 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014184 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029628 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NI B 1 31 1 NI NI . 
F 4 NA B 1 32 1 NA NA . 
G 3 NI D 1 31 1 NI NI . 
H 4 NA D 1 32 1 NA NA . 
I 5 HOH A 1 22 4 HOH HOH . 
I 5 HOH A 2 23 6 HOH HOH . 
I 5 HOH A 3 24 7 HOH HOH . 
I 5 HOH A 4 25 10 HOH HOH . 
I 5 HOH A 5 26 22 HOH HOH . 
I 5 HOH A 6 27 26 HOH HOH . 
I 5 HOH A 7 28 38 HOH HOH . 
I 5 HOH A 8 29 39 HOH HOH . 
I 5 HOH A 9 30 47 HOH HOH . 
I 5 HOH A 10 31 48 HOH HOH . 
I 5 HOH A 11 32 50 HOH HOH . 
I 5 HOH A 12 33 52 HOH HOH . 
I 5 HOH A 13 34 54 HOH HOH . 
I 5 HOH A 14 35 55 HOH HOH . 
I 5 HOH A 15 36 57 HOH HOH . 
I 5 HOH A 16 37 58 HOH HOH . 
I 5 HOH A 17 38 61 HOH HOH . 
I 5 HOH A 18 39 67 HOH HOH . 
I 5 HOH A 19 40 71 HOH HOH . 
I 5 HOH A 20 41 76 HOH HOH . 
I 5 HOH A 21 42 81 HOH HOH . 
I 5 HOH A 22 43 96 HOH HOH . 
I 5 HOH A 23 44 104 HOH HOH . 
I 5 HOH A 24 45 117 HOH HOH . 
I 5 HOH A 25 46 120 HOH HOH . 
I 5 HOH A 26 47 127 HOH HOH . 
I 5 HOH A 27 48 136 HOH HOH . 
I 5 HOH A 28 49 161 HOH HOH . 
I 5 HOH A 29 50 191 HOH HOH . 
J 5 HOH B 1 33 3 HOH HOH . 
J 5 HOH B 2 34 5 HOH HOH . 
J 5 HOH B 3 35 9 HOH HOH . 
J 5 HOH B 4 36 12 HOH HOH . 
J 5 HOH B 5 37 16 HOH HOH . 
J 5 HOH B 6 38 18 HOH HOH . 
J 5 HOH B 7 39 20 HOH HOH . 
J 5 HOH B 8 40 23 HOH HOH . 
J 5 HOH B 9 41 27 HOH HOH . 
J 5 HOH B 10 42 30 HOH HOH . 
J 5 HOH B 11 43 33 HOH HOH . 
J 5 HOH B 12 44 36 HOH HOH . 
J 5 HOH B 13 45 37 HOH HOH . 
J 5 HOH B 14 46 40 HOH HOH . 
J 5 HOH B 15 47 41 HOH HOH . 
J 5 HOH B 16 48 43 HOH HOH . 
J 5 HOH B 17 49 45 HOH HOH . 
J 5 HOH B 18 50 49 HOH HOH . 
J 5 HOH B 19 51 53 HOH HOH . 
J 5 HOH B 20 52 59 HOH HOH . 
J 5 HOH B 21 53 69 HOH HOH . 
J 5 HOH B 22 54 70 HOH HOH . 
J 5 HOH B 23 55 75 HOH HOH . 
J 5 HOH B 24 56 77 HOH HOH . 
J 5 HOH B 25 57 79 HOH HOH . 
J 5 HOH B 26 58 83 HOH HOH . 
J 5 HOH B 27 59 91 HOH HOH . 
J 5 HOH B 28 60 95 HOH HOH . 
J 5 HOH B 29 61 98 HOH HOH . 
J 5 HOH B 30 62 99 HOH HOH . 
J 5 HOH B 31 63 103 HOH HOH . 
J 5 HOH B 32 64 110 HOH HOH . 
J 5 HOH B 33 65 118 HOH HOH . 
J 5 HOH B 34 66 124 HOH HOH . 
J 5 HOH B 35 67 132 HOH HOH . 
J 5 HOH B 36 68 137 HOH HOH . 
J 5 HOH B 37 69 143 HOH HOH . 
J 5 HOH B 38 70 149 HOH HOH . 
J 5 HOH B 39 71 154 HOH HOH . 
J 5 HOH B 40 72 167 HOH HOH . 
J 5 HOH B 41 73 169 HOH HOH . 
J 5 HOH B 42 74 170 HOH HOH . 
J 5 HOH B 43 75 171 HOH HOH . 
J 5 HOH B 44 76 178 HOH HOH . 
J 5 HOH B 45 77 179 HOH HOH . 
J 5 HOH B 46 78 180 HOH HOH . 
J 5 HOH B 47 79 181 HOH HOH . 
J 5 HOH B 48 80 183 HOH HOH . 
J 5 HOH B 49 81 184 HOH HOH . 
J 5 HOH B 50 82 192 HOH HOH . 
J 5 HOH B 51 83 193 HOH HOH . 
J 5 HOH B 52 84 196 HOH HOH . 
J 5 HOH B 53 85 204 HOH HOH . 
J 5 HOH B 54 86 205 HOH HOH . 
J 5 HOH B 55 87 207 HOH HOH . 
K 5 HOH C 1 22 8 HOH HOH . 
K 5 HOH C 2 23 14 HOH HOH . 
K 5 HOH C 3 24 34 HOH HOH . 
K 5 HOH C 4 25 42 HOH HOH . 
K 5 HOH C 5 26 46 HOH HOH . 
K 5 HOH C 6 27 56 HOH HOH . 
K 5 HOH C 7 28 64 HOH HOH . 
K 5 HOH C 8 29 66 HOH HOH . 
K 5 HOH C 9 30 72 HOH HOH . 
K 5 HOH C 10 31 73 HOH HOH . 
K 5 HOH C 11 32 78 HOH HOH . 
K 5 HOH C 12 33 80 HOH HOH . 
K 5 HOH C 13 34 84 HOH HOH . 
K 5 HOH C 14 35 102 HOH HOH . 
K 5 HOH C 15 36 114 HOH HOH . 
K 5 HOH C 16 37 116 HOH HOH . 
K 5 HOH C 17 38 121 HOH HOH . 
K 5 HOH C 18 39 126 HOH HOH . 
K 5 HOH C 19 40 130 HOH HOH . 
K 5 HOH C 20 41 146 HOH HOH . 
K 5 HOH C 21 42 173 HOH HOH . 
K 5 HOH C 22 43 175 HOH HOH . 
K 5 HOH C 23 44 197 HOH HOH . 
L 5 HOH D 1 33 11 HOH HOH . 
L 5 HOH D 2 34 13 HOH HOH . 
L 5 HOH D 3 35 15 HOH HOH . 
L 5 HOH D 4 36 17 HOH HOH . 
L 5 HOH D 5 37 19 HOH HOH . 
L 5 HOH D 6 38 21 HOH HOH . 
L 5 HOH D 7 39 24 HOH HOH . 
L 5 HOH D 8 40 25 HOH HOH . 
L 5 HOH D 9 41 28 HOH HOH . 
L 5 HOH D 10 42 29 HOH HOH . 
L 5 HOH D 11 43 31 HOH HOH . 
L 5 HOH D 12 44 32 HOH HOH . 
L 5 HOH D 13 45 35 HOH HOH . 
L 5 HOH D 14 46 44 HOH HOH . 
L 5 HOH D 15 47 51 HOH HOH . 
L 5 HOH D 16 48 60 HOH HOH . 
L 5 HOH D 17 49 63 HOH HOH . 
L 5 HOH D 18 50 65 HOH HOH . 
L 5 HOH D 19 51 68 HOH HOH . 
L 5 HOH D 20 52 74 HOH HOH . 
L 5 HOH D 21 53 85 HOH HOH . 
L 5 HOH D 22 54 87 HOH HOH . 
L 5 HOH D 23 55 88 HOH HOH . 
L 5 HOH D 24 56 90 HOH HOH . 
L 5 HOH D 25 57 92 HOH HOH . 
L 5 HOH D 26 58 97 HOH HOH . 
L 5 HOH D 27 59 101 HOH HOH . 
L 5 HOH D 28 60 105 HOH HOH . 
L 5 HOH D 29 61 106 HOH HOH . 
L 5 HOH D 30 62 111 HOH HOH . 
L 5 HOH D 31 63 113 HOH HOH . 
L 5 HOH D 32 64 115 HOH HOH . 
L 5 HOH D 33 65 123 HOH HOH . 
L 5 HOH D 34 66 133 HOH HOH . 
L 5 HOH D 35 67 155 HOH HOH . 
L 5 HOH D 36 68 157 HOH HOH . 
L 5 HOH D 37 69 163 HOH HOH . 
L 5 HOH D 38 70 176 HOH HOH . 
L 5 HOH D 39 71 182 HOH HOH . 
L 5 HOH D 40 72 186 HOH HOH . 
L 5 HOH D 41 73 195 HOH HOH . 
L 5 HOH D 42 74 198 HOH HOH . 
L 5 HOH D 43 75 203 HOH HOH . 
L 5 HOH D 44 76 206 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -1.906 
_atom_site.Cartn_y               17.947 
_atom_site.Cartn_z               -6.267 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        13.92 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           32 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#