data_3EXY # _model_server_result.job_id NVpVGP1_o4oARaD4VAnnbA _model_server_result.datetime_utc '2025-08-31 13:57:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3exy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":83}' # _entry.id 3EXY # _exptl.entry_id 3EXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EXY _cell.length_a 51.425 _cell.length_b 51.425 _cell.length_c 76.425 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 B FE1 SF4 . A SF4 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 B FE2 SF4 . A SF4 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 A SG CYS 14 A CYS 14 1_555 B FE3 SF4 . A SF4 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 A SG CYS 18 A CYS 18 1_555 C FE4 SF4 . A SF4 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A SG CYS 37 A CYS 37 1_555 C FE1 SF4 . A SF4 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc6 A SG CYS 40 A CYS 40 1_555 C FE2 SF4 . A SF4 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc7 A SG CYS 49 A CYS 49 1_555 C FE3 SF4 . A SF4 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 A SG CYS 53 A CYS 53 1_555 B FE4 SF4 . A SF4 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 267 n n FE1 S3 SF4 sing 268 n n FE1 S4 SF4 sing 269 n n FE2 S1 SF4 sing 270 n n FE2 S3 SF4 sing 271 n n FE2 S4 SF4 sing 272 n n FE3 S1 SF4 sing 273 n n FE3 S2 SF4 sing 274 n n FE3 S4 SF4 sing 275 n n FE4 S1 SF4 sing 276 n n FE4 S2 SF4 sing 277 n n FE4 S3 SF4 sing 278 n n # _atom_sites.entry_id 3EXY _atom_sites.fract_transf_matrix[1][1] 0.019446 _atom_sites.fract_transf_matrix[1][2] 0.011227 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 83 1 SF4 FS4 . C 2 SF4 A 1 84 2 SF4 FS4 . D 3 HOH A 1 85 85 HOH HOH . D 3 HOH A 2 86 86 HOH HOH . D 3 HOH A 3 87 87 HOH HOH . D 3 HOH A 4 88 88 HOH HOH . D 3 HOH A 5 89 89 HOH HOH . D 3 HOH A 6 90 90 HOH HOH . D 3 HOH A 7 91 91 HOH HOH . D 3 HOH A 8 92 92 HOH HOH . D 3 HOH A 9 93 93 HOH HOH . D 3 HOH A 10 94 94 HOH HOH . D 3 HOH A 11 95 95 HOH HOH . D 3 HOH A 12 96 96 HOH HOH . D 3 HOH A 13 97 97 HOH HOH . D 3 HOH A 14 98 98 HOH HOH . D 3 HOH A 15 99 1 HOH HOH . D 3 HOH A 16 100 100 HOH HOH . D 3 HOH A 17 101 101 HOH HOH . D 3 HOH A 18 102 102 HOH HOH . D 3 HOH A 19 103 103 HOH HOH . D 3 HOH A 20 104 104 HOH HOH . D 3 HOH A 21 105 105 HOH HOH . D 3 HOH A 22 106 106 HOH HOH . D 3 HOH A 23 107 107 HOH HOH . D 3 HOH A 24 108 108 HOH HOH . D 3 HOH A 25 109 109 HOH HOH . D 3 HOH A 26 110 110 HOH HOH . D 3 HOH A 27 111 111 HOH HOH . D 3 HOH A 28 112 2 HOH HOH . D 3 HOH A 29 113 113 HOH HOH . D 3 HOH A 30 114 114 HOH HOH . D 3 HOH A 31 115 115 HOH HOH . D 3 HOH A 32 116 116 HOH HOH . D 3 HOH A 33 117 117 HOH HOH . D 3 HOH A 34 118 118 HOH HOH . D 3 HOH A 35 119 119 HOH HOH . D 3 HOH A 36 120 120 HOH HOH . D 3 HOH A 37 121 121 HOH HOH . D 3 HOH A 38 122 3 HOH HOH . D 3 HOH A 39 123 123 HOH HOH . D 3 HOH A 40 124 124 HOH HOH . D 3 HOH A 41 125 125 HOH HOH . D 3 HOH A 42 126 126 HOH HOH . D 3 HOH A 43 127 127 HOH HOH . D 3 HOH A 44 128 128 HOH HOH . D 3 HOH A 45 129 129 HOH HOH . D 3 HOH A 46 130 130 HOH HOH . D 3 HOH A 47 131 131 HOH HOH . D 3 HOH A 48 132 132 HOH HOH . D 3 HOH A 49 133 133 HOH HOH . D 3 HOH A 50 134 134 HOH HOH . D 3 HOH A 51 135 135 HOH HOH . D 3 HOH A 52 136 136 HOH HOH . D 3 HOH A 53 137 4 HOH HOH . D 3 HOH A 54 138 138 HOH HOH . D 3 HOH A 55 139 139 HOH HOH . D 3 HOH A 56 140 5 HOH HOH . D 3 HOH A 57 141 141 HOH HOH . D 3 HOH A 58 142 142 HOH HOH . D 3 HOH A 59 143 143 HOH HOH . D 3 HOH A 60 144 144 HOH HOH . D 3 HOH A 61 145 145 HOH HOH . D 3 HOH A 62 146 146 HOH HOH . D 3 HOH A 63 147 147 HOH HOH . D 3 HOH A 64 148 148 HOH HOH . D 3 HOH A 65 149 149 HOH HOH . D 3 HOH A 66 150 150 HOH HOH . D 3 HOH A 67 151 151 HOH HOH . D 3 HOH A 68 152 152 HOH HOH . D 3 HOH A 69 153 153 HOH HOH . D 3 HOH A 70 154 6 HOH HOH . D 3 HOH A 71 155 155 HOH HOH . D 3 HOH A 72 156 156 HOH HOH . D 3 HOH A 73 157 7 HOH HOH . D 3 HOH A 74 158 158 HOH HOH . D 3 HOH A 75 159 8 HOH HOH . D 3 HOH A 76 160 160 HOH HOH . D 3 HOH A 77 161 161 HOH HOH . D 3 HOH A 78 162 162 HOH HOH . D 3 HOH A 79 163 163 HOH HOH . D 3 HOH A 80 164 164 HOH HOH . D 3 HOH A 81 165 9 HOH HOH . D 3 HOH A 82 166 166 HOH HOH . D 3 HOH A 83 167 10 HOH HOH . D 3 HOH A 84 168 168 HOH HOH . D 3 HOH A 85 169 169 HOH HOH . D 3 HOH A 86 170 11 HOH HOH . D 3 HOH A 87 171 12 HOH HOH . D 3 HOH A 88 172 13 HOH HOH . D 3 HOH A 89 173 173 HOH HOH . D 3 HOH A 90 174 174 HOH HOH . D 3 HOH A 91 175 175 HOH HOH . D 3 HOH A 92 176 176 HOH HOH . D 3 HOH A 93 177 14 HOH HOH . D 3 HOH A 94 178 15 HOH HOH . D 3 HOH A 95 179 16 HOH HOH . D 3 HOH A 96 180 17 HOH HOH . D 3 HOH A 97 181 18 HOH HOH . D 3 HOH A 98 182 19 HOH HOH . D 3 HOH A 99 183 183 HOH HOH . D 3 HOH A 100 184 20 HOH HOH . D 3 HOH A 101 185 185 HOH HOH . D 3 HOH A 102 186 186 HOH HOH . D 3 HOH A 103 187 187 HOH HOH . D 3 HOH A 104 188 21 HOH HOH . D 3 HOH A 105 189 22 HOH HOH . D 3 HOH A 106 190 23 HOH HOH . D 3 HOH A 107 191 191 HOH HOH . D 3 HOH A 108 192 192 HOH HOH . D 3 HOH A 109 193 24 HOH HOH . D 3 HOH A 110 194 25 HOH HOH . D 3 HOH A 111 195 26 HOH HOH . D 3 HOH A 112 196 27 HOH HOH . D 3 HOH A 113 197 28 HOH HOH . D 3 HOH A 114 198 29 HOH HOH . D 3 HOH A 115 199 30 HOH HOH . D 3 HOH A 116 200 31 HOH HOH . D 3 HOH A 117 201 32 HOH HOH . D 3 HOH A 118 202 33 HOH HOH . D 3 HOH A 119 203 34 HOH HOH . D 3 HOH A 120 204 35 HOH HOH . D 3 HOH A 121 205 36 HOH HOH . D 3 HOH A 122 206 37 HOH HOH . D 3 HOH A 123 207 38 HOH HOH . D 3 HOH A 124 208 39 HOH HOH . D 3 HOH A 125 209 40 HOH HOH . D 3 HOH A 126 210 41 HOH HOH . D 3 HOH A 127 211 42 HOH HOH . D 3 HOH A 128 212 43 HOH HOH . D 3 HOH A 129 213 44 HOH HOH . D 3 HOH A 130 214 45 HOH HOH . D 3 HOH A 131 215 46 HOH HOH . D 3 HOH A 132 216 47 HOH HOH . D 3 HOH A 133 217 48 HOH HOH . D 3 HOH A 134 218 49 HOH HOH . D 3 HOH A 135 219 50 HOH HOH . D 3 HOH A 136 220 51 HOH HOH . D 3 HOH A 137 221 52 HOH HOH . D 3 HOH A 138 222 53 HOH HOH . D 3 HOH A 139 223 54 HOH HOH . D 3 HOH A 140 224 55 HOH HOH . D 3 HOH A 141 225 56 HOH HOH . D 3 HOH A 142 226 57 HOH HOH . D 3 HOH A 143 227 58 HOH HOH . D 3 HOH A 144 228 59 HOH HOH . D 3 HOH A 145 229 60 HOH HOH . D 3 HOH A 146 230 61 HOH HOH . D 3 HOH A 147 231 62 HOH HOH . D 3 HOH A 148 232 63 HOH HOH . D 3 HOH A 149 233 64 HOH HOH . D 3 HOH A 150 234 65 HOH HOH . D 3 HOH A 151 235 66 HOH HOH . D 3 HOH A 152 236 67 HOH HOH . D 3 HOH A 153 237 68 HOH HOH . D 3 HOH A 154 238 69 HOH HOH . D 3 HOH A 155 239 70 HOH HOH . D 3 HOH A 156 240 71 HOH HOH . D 3 HOH A 157 241 72 HOH HOH . D 3 HOH A 158 242 73 HOH HOH . D 3 HOH A 159 243 74 HOH HOH . D 3 HOH A 160 244 75 HOH HOH . D 3 HOH A 161 245 76 HOH HOH . D 3 HOH A 162 246 77 HOH HOH . D 3 HOH A 163 247 78 HOH HOH . D 3 HOH A 164 248 79 HOH HOH . D 3 HOH A 165 249 80 HOH HOH . D 3 HOH A 166 250 81 HOH HOH . D 3 HOH A 167 251 82 HOH HOH . D 3 HOH A 168 252 83 HOH HOH . D 3 HOH A 169 253 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 30.425 3.728 3.869 1 16.19 ? FE1 SF4 83 A 1 HETATM 2 FE FE2 SF4 . . . B 2 29.715 2.085 1.842 1 16.24 ? FE2 SF4 83 A 1 HETATM 3 FE FE3 SF4 . . . B 2 29.879 4.746 1.452 1 15.36 ? FE3 SF4 83 A 1 HETATM 4 FE FE4 SF4 . . . B 2 27.858 3.725 2.989 1 15.71 ? FE4 SF4 83 A 1 HETATM 5 S S1 SF4 . . . B 2 28.216 3.421 0.734 1 15.31 ? S1 SF4 83 A 1 HETATM 6 S S2 SF4 . . . B 2 29.129 5.539 3.452 1 15.65 ? S2 SF4 83 A 1 HETATM 7 S S3 SF4 . . . B 2 28.953 2.003 4.002 1 16.43 ? S3 SF4 83 A 1 HETATM 8 S S4 SF4 . . . B 2 31.593 3.347 1.954 1 15.74 ? S4 SF4 83 A 1 # _model_server_stats.io_time_ms 189 _model_server_stats.parse_time_ms 102 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 51 _model_server_stats.element_count 8 #