data_3EY0 # _model_server_result.job_id m-f7SF_sFL2r1dgIdLuCUw _model_server_result.datetime_utc '2025-03-06 10:17:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ey0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":11}' # _entry.id 3EY0 # _exptl.entry_id 3EY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EY0 _cell.length_a 27.789 _cell.length_b 27.789 _cell.length_c 311.95 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O HOH . A HOH 27 1_555 D MG MG . B MG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 E O HOH . A HOH 28 1_555 D MG MG . B MG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 E O HOH . A HOH 29 1_555 D MG MG . B MG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 D MG MG . B MG 11 1_555 F O HOH . B HOH 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc5 D MG MG . B MG 11 1_555 F O HOH . B HOH 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc6 D MG MG . B MG 11 1_555 F O HOH . B HOH 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? hydrog WATSON-CRICK hydrog1 A N1 DA 1 A DA 1 1_555 B N3 DT 10 B DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 A DA 1 1_555 B O4 DT 10 B DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DT 2 A DT 2 1_555 B N1 DA 9 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O4 DT 2 A DT 2 1_555 B N6 DA 9 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DA 3 A DA 3 1_555 B N3 DT 8 B DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 DA 3 A DA 3 1_555 B O4 DT 8 B DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 4 A DT 4 1_555 B N1 DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 4 A DT 4 1_555 B N6 DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 5 A DA 5 1_555 B N3 DT 6 B DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 5 A DA 5 1_555 B O4 DT 6 B DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 6 A DT 6 1_555 B N1 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 6 A DT 6 1_555 B N6 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 7 A DA 7 1_555 B N3 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 7 A DA 7 1_555 B O4 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 8 A DT 8 1_555 B N1 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 8 A DT 8 1_555 B N6 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DA 9 A DA 9 1_555 B N3 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 DA 9 A DA 9 1_555 B O4 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog19 A N3 DT 10 A DT 10 1_555 B N7 DA 1 B DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog20 A O4 DT 10 A DT 10 1_555 B N6 DA 1 B DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EY0 _atom_sites.fract_transf_matrix[1][1] 0.035985 _atom_sites.fract_transf_matrix[1][2] 0.020776 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.041552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PNT A 1 11 1 PNT PNT . D 3 MG B 1 11 1 MG MG . E 4 HOH A 1 12 4 HOH HOH . E 4 HOH A 2 13 5 HOH HOH . E 4 HOH A 3 14 9 HOH HOH . E 4 HOH A 4 15 11 HOH HOH . E 4 HOH A 5 16 13 HOH HOH . E 4 HOH A 6 17 15 HOH HOH . E 4 HOH A 7 18 17 HOH HOH . E 4 HOH A 8 19 18 HOH HOH . E 4 HOH A 9 20 19 HOH HOH . E 4 HOH A 10 21 29 HOH HOH . E 4 HOH A 11 22 35 HOH HOH . E 4 HOH A 12 23 41 HOH HOH . E 4 HOH A 13 24 43 HOH HOH . E 4 HOH A 14 25 57 HOH HOH . E 4 HOH A 15 26 58 HOH HOH . E 4 HOH A 16 27 66 HOH HOH . E 4 HOH A 17 28 67 HOH HOH . E 4 HOH A 18 29 68 HOH HOH . E 4 HOH A 19 30 70 HOH HOH . E 4 HOH A 20 32 79 HOH HOH . E 4 HOH A 21 33 80 HOH HOH . E 4 HOH A 22 34 81 HOH HOH . E 4 HOH A 23 35 82 HOH HOH . E 4 HOH A 24 36 83 HOH HOH . E 4 HOH A 25 37 84 HOH HOH . E 4 HOH A 26 38 86 HOH HOH . E 4 HOH A 27 39 87 HOH HOH . F 4 HOH B 1 31 77 HOH HOH . F 4 HOH B 2 32 1 HOH HOH . F 4 HOH B 3 33 2 HOH HOH . F 4 HOH B 4 34 3 HOH HOH . F 4 HOH B 5 35 7 HOH HOH . F 4 HOH B 6 36 12 HOH HOH . F 4 HOH B 7 37 14 HOH HOH . F 4 HOH B 8 38 22 HOH HOH . F 4 HOH B 9 39 25 HOH HOH . F 4 HOH B 10 40 27 HOH HOH . F 4 HOH B 11 41 28 HOH HOH . F 4 HOH B 12 42 30 HOH HOH . F 4 HOH B 13 43 31 HOH HOH . F 4 HOH B 14 44 59 HOH HOH . F 4 HOH B 15 45 60 HOH HOH . F 4 HOH B 16 46 61 HOH HOH . F 4 HOH B 17 47 63 HOH HOH . F 4 HOH B 18 48 64 HOH HOH . F 4 HOH B 19 49 71 HOH HOH . F 4 HOH B 20 50 72 HOH HOH . F 4 HOH B 21 51 73 HOH HOH . F 4 HOH B 22 52 74 HOH HOH . F 4 HOH B 23 53 78 HOH HOH . F 4 HOH B 24 54 88 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.083 _atom_site.Cartn_y 9.19 _atom_site.Cartn_z 91.895 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 11 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #