data_3EY1
#
_model_server_result.job_id            kNC18XEEpoC20tVgUvAKjA 
_model_server_result.datetime_utc      '2024-12-21 14:33:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ey1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    3EY1 
#
_exptl.entry_id    3EY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.3 
_cell.angle_gamma         90 
_cell.entry_id            3EY1 
_cell.length_a            81.93 
_cell.length_b            66.62 
_cell.length_c            38.77 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' DA 6 B DA 306 1_555 B P USM 7 B USM 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? 
covale ? covale2 B O3' USM 7 B USM 307 1_555 B P USM 8 B USM 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? 
covale ? covale3 B O3' USM 8 B USM 308 1_555 B P DC 9 B DC 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.573 ? 
hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 301 1_555 B N1 DG 12 B DG 312 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 301 1_555 B O6 DG 12 B DG 312 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 301 1_555 B N2 DG 12 B DG 312 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N1 DG 2 B DG 302 1_555 B N3 DC 11 B DC 311 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N2 DG 2 B DG 302 1_555 B O2 DC 11 B DC 311 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B O6 DG 2 B DG 302 1_555 B N4 DC 11 B DC 311 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N3 DC 3 B DC 303 1_555 B N1 DG 10 B DG 310 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N4 DC 3 B DC 303 1_555 B O6 DG 10 B DG 310 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B O2 DC 3 B DC 303 1_555 B N2 DG 10 B DG 310 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N1 DG 4 B DG 304 1_555 B N3 DC 9 B DC 309 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N2 DG 4 B DG 304 1_555 B O2 DC 9 B DC 309 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B O6 DG 4 B DG 304 1_555 B N4 DC 9 B DC 309 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N1 DA 5 B DA 305 1_555 B N3 USM 8 B USM 308 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N6 DA 5 B DA 305 1_555 B O4 USM 8 B USM 308 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N1 DA 6 B DA 306 1_555 B N3 USM 7 B USM 307 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B N6 DA 6 B DA 306 1_555 B O4 USM 7 B USM 307 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N3 USM 7 B USM 307 1_555 B N1 DA 6 B DA 306 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B O4 USM 7 B USM 307 1_555 B N6 DA 6 B DA 306 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B N3 USM 8 B USM 308 1_555 B N1 DA 5 B DA 305 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 B O4 USM 8 B USM 308 1_555 B N6 DA 5 B DA 305 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 B N3 DC 9 B DC 309 1_555 B N1 DG 4 B DG 304 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B N4 DC 9 B DC 309 1_555 B O6 DG 4 B DG 304 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B O2 DC 9 B DC 309 1_555 B N2 DG 4 B DG 304 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 B N1 DG 10 B DG 310 1_555 B N3 DC 3 B DC 303 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 B N2 DG 10 B DG 310 1_555 B O2 DC 3 B DC 303 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 B O6 DG 10 B DG 310 1_555 B N4 DC 3 B DC 303 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 B N3 DC 11 B DC 311 1_555 B N1 DG 2 B DG 302 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 B N4 DC 11 B DC 311 1_555 B O6 DG 2 B DG 302 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 B O2 DC 11 B DC 311 1_555 B N2 DG 2 B DG 302 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 B N1 DG 12 B DG 312 1_555 B N3 DC 1 B DC 301 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 B N2 DG 12 B DG 312 1_555 B O2 DC 1 B DC 301 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 B O6 DG 12 B DG 312 1_555 B N4 DC 1 B DC 301 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 228 n n 
C1 C2 GOL sing 229 n n 
C1 H11 GOL sing 230 n n 
C1 H12 GOL sing 231 n n 
O1 HO1 GOL sing 232 n n 
C2 O2 GOL sing 233 n n 
C2 C3 GOL sing 234 n n 
C2 H2 GOL sing 235 n n 
O2 HO2 GOL sing 236 n n 
C3 O3 GOL sing 237 n n 
C3 H31 GOL sing 238 n n 
C3 H32 GOL sing 239 n n 
O3 HO3 GOL sing 240 n n 
#
_atom_sites.entry_id                     3EY1 
_atom_sites.fract_transf_matrix[1][1]    0.012206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002885 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015011 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL B 1 601 601 GOL GOL . 
D 3 GOL B 1 602 602 GOL GOL . 
E 3 GOL B 1 603 603 GOL GOL . 
F 4 HOH A 1 401 401 HOH HOH . 
F 4 HOH A 2 402 402 HOH HOH . 
F 4 HOH A 3 403 403 HOH HOH . 
F 4 HOH A 4 405 405 HOH HOH . 
F 4 HOH A 5 406 406 HOH HOH . 
F 4 HOH A 6 408 408 HOH HOH . 
F 4 HOH A 7 409 409 HOH HOH . 
F 4 HOH A 8 411 411 HOH HOH . 
F 4 HOH A 9 412 412 HOH HOH . 
F 4 HOH A 10 413 413 HOH HOH . 
F 4 HOH A 11 414 414 HOH HOH . 
F 4 HOH A 12 415 415 HOH HOH . 
F 4 HOH A 13 418 418 HOH HOH . 
F 4 HOH A 14 419 419 HOH HOH . 
F 4 HOH A 15 421 421 HOH HOH . 
F 4 HOH A 16 422 422 HOH HOH . 
F 4 HOH A 17 423 423 HOH HOH . 
F 4 HOH A 18 424 424 HOH HOH . 
F 4 HOH A 19 426 426 HOH HOH . 
F 4 HOH A 20 429 429 HOH HOH . 
F 4 HOH A 21 430 430 HOH HOH . 
F 4 HOH A 22 432 432 HOH HOH . 
F 4 HOH A 23 434 434 HOH HOH . 
F 4 HOH A 24 435 435 HOH HOH . 
F 4 HOH A 25 437 437 HOH HOH . 
F 4 HOH A 26 438 438 HOH HOH . 
F 4 HOH A 27 439 439 HOH HOH . 
F 4 HOH A 28 440 440 HOH HOH . 
F 4 HOH A 29 441 441 HOH HOH . 
F 4 HOH A 30 442 442 HOH HOH . 
F 4 HOH A 31 443 443 HOH HOH . 
F 4 HOH A 32 444 444 HOH HOH . 
F 4 HOH A 33 445 445 HOH HOH . 
F 4 HOH A 34 446 446 HOH HOH . 
F 4 HOH A 35 447 447 HOH HOH . 
F 4 HOH A 36 448 448 HOH HOH . 
F 4 HOH A 37 449 449 HOH HOH . 
F 4 HOH A 38 450 450 HOH HOH . 
F 4 HOH A 39 451 451 HOH HOH . 
F 4 HOH A 40 454 454 HOH HOH . 
F 4 HOH A 41 456 456 HOH HOH . 
F 4 HOH A 42 458 458 HOH HOH . 
F 4 HOH A 43 459 459 HOH HOH . 
F 4 HOH A 44 462 462 HOH HOH . 
F 4 HOH A 45 463 463 HOH HOH . 
F 4 HOH A 46 464 464 HOH HOH . 
F 4 HOH A 47 465 465 HOH HOH . 
F 4 HOH A 48 466 466 HOH HOH . 
F 4 HOH A 49 467 467 HOH HOH . 
F 4 HOH A 50 468 468 HOH HOH . 
F 4 HOH A 51 469 469 HOH HOH . 
F 4 HOH A 52 470 470 HOH HOH . 
F 4 HOH A 53 471 471 HOH HOH . 
F 4 HOH A 54 472 472 HOH HOH . 
F 4 HOH A 55 473 473 HOH HOH . 
F 4 HOH A 56 474 474 HOH HOH . 
F 4 HOH A 57 475 475 HOH HOH . 
F 4 HOH A 58 477 477 HOH HOH . 
F 4 HOH A 59 478 478 HOH HOH . 
F 4 HOH A 60 479 479 HOH HOH . 
F 4 HOH A 61 480 480 HOH HOH . 
F 4 HOH A 62 481 481 HOH HOH . 
F 4 HOH A 63 482 482 HOH HOH . 
F 4 HOH A 64 485 485 HOH HOH . 
F 4 HOH A 65 486 486 HOH HOH . 
F 4 HOH A 66 494 494 HOH HOH . 
F 4 HOH A 67 496 496 HOH HOH . 
F 4 HOH A 68 497 497 HOH HOH . 
F 4 HOH A 69 498 498 HOH HOH . 
F 4 HOH A 70 499 499 HOH HOH . 
F 4 HOH A 71 500 500 HOH HOH . 
F 4 HOH A 72 501 501 HOH HOH . 
F 4 HOH A 73 502 502 HOH HOH . 
F 4 HOH A 74 503 503 HOH HOH . 
G 4 HOH B 1 404 404 HOH HOH . 
G 4 HOH B 2 407 407 HOH HOH . 
G 4 HOH B 3 410 410 HOH HOH . 
G 4 HOH B 4 416 416 HOH HOH . 
G 4 HOH B 5 417 417 HOH HOH . 
G 4 HOH B 6 420 420 HOH HOH . 
G 4 HOH B 7 425 425 HOH HOH . 
G 4 HOH B 8 427 427 HOH HOH . 
G 4 HOH B 9 428 428 HOH HOH . 
G 4 HOH B 10 431 431 HOH HOH . 
G 4 HOH B 11 433 433 HOH HOH . 
G 4 HOH B 12 436 436 HOH HOH . 
G 4 HOH B 13 452 452 HOH HOH . 
G 4 HOH B 14 453 453 HOH HOH . 
G 4 HOH B 15 455 455 HOH HOH . 
G 4 HOH B 16 457 457 HOH HOH . 
G 4 HOH B 17 460 460 HOH HOH . 
G 4 HOH B 18 461 461 HOH HOH . 
G 4 HOH B 19 476 476 HOH HOH . 
G 4 HOH B 20 483 483 HOH HOH . 
G 4 HOH B 21 484 484 HOH HOH . 
G 4 HOH B 22 487 487 HOH HOH . 
G 4 HOH B 23 488 488 HOH HOH . 
G 4 HOH B 24 489 489 HOH HOH . 
G 4 HOH B 25 490 490 HOH HOH . 
G 4 HOH B 26 491 491 HOH HOH . 
G 4 HOH B 27 492 492 HOH HOH . 
G 4 HOH B 28 493 493 HOH HOH . 
G 4 HOH B 29 495 495 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 6.845 -18.366 -1.772 1 76.24 ? C1 GOL 602 B 1 
HETATM 2 O O1 GOL . . . D 3 6.923 -17.738 -3.052 1 82.36 ? O1 GOL 602 B 1 
HETATM 3 C C2 GOL . . . D 3 6.337 -17.368 -0.728 1 71.87 ? C2 GOL 602 B 1 
HETATM 4 O O2 GOL . . . D 3 5.618 -18.098 0.269 1 69.6 ? O2 GOL 602 B 1 
HETATM 5 C C3 GOL . . . D 3 7.513 -16.635 -0.082 1 76.64 ? C3 GOL 602 B 1 
HETATM 6 O O3 GOL . . . D 3 7.047 -15.669 0.867 1 88.95 ? O3 GOL 602 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           6 
#