data_3EY4 # _model_server_result.job_id q_jsGhB5y38ghV0t3VnSMg _model_server_result.datetime_utc '2024-12-21 18:59:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ey4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3EY4 # _exptl.entry_id 3EY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EY4 _cell.length_a 49.043 _cell.length_b 138.482 _cell.length_c 155.336 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 276 n n PA O2A NDP sing 277 n n PA O5B NDP sing 278 n n PA O3 NDP sing 279 n n O2A HOA2 NDP sing 280 n n O5B C5B NDP sing 281 n n C5B C4B NDP sing 282 n n C5B H51A NDP sing 283 n n C5B H52A NDP sing 284 n n C4B O4B NDP sing 285 n n C4B C3B NDP sing 286 n n C4B H4B NDP sing 287 n n O4B C1B NDP sing 288 n n C3B O3B NDP sing 289 n n C3B C2B NDP sing 290 n n C3B H3B NDP sing 291 n n O3B HO3A NDP sing 292 n n C2B O2B NDP sing 293 n n C2B C1B NDP sing 294 n n C2B H2B NDP sing 295 n n O2B P2B NDP sing 296 n n C1B N9A NDP sing 297 n n C1B H1B NDP sing 298 n n N9A C8A NDP sing 299 n y N9A C4A NDP sing 300 n y C8A N7A NDP doub 301 n y C8A H8A NDP sing 302 n n N7A C5A NDP sing 303 n y C5A C6A NDP sing 304 n y C5A C4A NDP doub 305 n y C6A N6A NDP sing 306 n n C6A N1A NDP doub 307 n y N6A H61A NDP sing 308 n n N6A H62A NDP sing 309 n n N1A C2A NDP sing 310 n y C2A N3A NDP doub 311 n y C2A H2A NDP sing 312 n n N3A C4A NDP sing 313 n y O3 PN NDP sing 314 n n PN O1N NDP doub 315 n n PN O2N NDP sing 316 n n PN O5D NDP sing 317 n n O2N H21N NDP sing 318 n n O5D C5D NDP sing 319 n n C5D C4D NDP sing 320 n n C5D H51N NDP sing 321 n n C5D H52N NDP sing 322 n n C4D O4D NDP sing 323 n n C4D C3D NDP sing 324 n n C4D H4D NDP sing 325 n n O4D C1D NDP sing 326 n n C3D O3D NDP sing 327 n n C3D C2D NDP sing 328 n n C3D H3D NDP sing 329 n n O3D HO3N NDP sing 330 n n C2D O2D NDP sing 331 n n C2D C1D NDP sing 332 n n C2D H2D NDP sing 333 n n O2D HO2N NDP sing 334 n n C1D N1N NDP sing 335 n n C1D H1D NDP sing 336 n n N1N C2N NDP sing 337 n n N1N C6N NDP sing 338 n n C2N C3N NDP doub 339 n n C2N H2N NDP sing 340 n n C3N C7N NDP sing 341 n n C3N C4N NDP sing 342 n n C7N O7N NDP doub 343 n n C7N N7N NDP sing 344 n n N7N H71N NDP sing 345 n n N7N H72N NDP sing 346 n n C4N C5N NDP sing 347 n n C4N H41N NDP sing 348 n n C4N H42N NDP sing 349 n n C5N C6N NDP doub 350 n n C5N H5N NDP sing 351 n n C6N H6N NDP sing 352 n n P2B O1X NDP doub 353 n n P2B O2X NDP sing 354 n n P2B O3X NDP sing 355 n n O2X HOP2 NDP sing 356 n n O3X HOP3 NDP sing 357 n n # _atom_sites.entry_id 3EY4 _atom_sites.fract_transf_matrix[1][1] 0.02039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 501 501 NDP NDP . F 3 352 A 1 601 601 352 352 . G 2 NDP B 1 502 502 NDP NDP . H 3 352 B 1 603 603 352 352 . I 2 NDP C 1 503 503 NDP NDP . J 3 352 C 1 602 602 352 352 . K 2 NDP D 1 504 504 NDP NDP . L 3 352 D 1 604 604 352 352 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 42.722 -6.888 147.918 1 36.11 ? PA NDP 501 A 1 HETATM 2 O O1A NDP . . . E 2 43.572 -7.872 148.722 1 34.72 ? O1A NDP 501 A 1 HETATM 3 O O2A NDP . . . E 2 43.471 -5.676 147.464 1 36.13 ? O2A NDP 501 A 1 HETATM 4 O O5B NDP . . . E 2 42.202 -7.592 146.649 1 34.8 ? O5B NDP 501 A 1 HETATM 5 C C5B NDP . . . E 2 41.963 -6.792 145.51 1 34.45 ? C5B NDP 501 A 1 HETATM 6 C C4B NDP . . . E 2 41.546 -7.707 144.344 1 34.75 ? C4B NDP 501 A 1 HETATM 7 O O4B NDP . . . E 2 41.203 -6.804 143.327 1 33.34 ? O4B NDP 501 A 1 HETATM 8 C C3B NDP . . . E 2 42.691 -8.619 143.766 1 34.61 ? C3B NDP 501 A 1 HETATM 9 O O3B NDP . . . E 2 42.471 -10.052 143.662 1 34.75 ? O3B NDP 501 A 1 HETATM 10 C C2B NDP . . . E 2 43.013 -7.864 142.493 1 34.38 ? C2B NDP 501 A 1 HETATM 11 O O2B NDP . . . E 2 43.744 -8.605 141.506 1 35.42 ? O2B NDP 501 A 1 HETATM 12 C C1B NDP . . . E 2 41.665 -7.26 142.091 1 33.06 ? C1B NDP 501 A 1 HETATM 13 N N9A NDP . . . E 2 41.768 -6.07 141.243 1 31.83 ? N9A NDP 501 A 1 HETATM 14 C C8A NDP . . . E 2 42.38 -4.895 141.469 1 31.52 ? C8A NDP 501 A 1 HETATM 15 N N7A NDP . . . E 2 42.263 -4.038 140.444 1 30.79 ? N7A NDP 501 A 1 HETATM 16 C C5A NDP . . . E 2 41.542 -4.693 139.484 1 30.65 ? C5A NDP 501 A 1 HETATM 17 C C6A NDP . . . E 2 41.11 -4.433 138.18 1 31.5 ? C6A NDP 501 A 1 HETATM 18 N N6A NDP . . . E 2 41.387 -3.281 137.517 1 30.28 ? N6A NDP 501 A 1 HETATM 19 N N1A NDP . . . E 2 40.386 -5.377 137.479 1 33.84 ? N1A NDP 501 A 1 HETATM 20 C C2A NDP . . . E 2 40.05 -6.604 138.069 1 34.59 ? C2A NDP 501 A 1 HETATM 21 N N3A NDP . . . E 2 40.459 -6.891 139.334 1 32.82 ? N3A NDP 501 A 1 HETATM 22 C C4A NDP . . . E 2 41.208 -5.968 140.014 1 30.8 ? C4A NDP 501 A 1 HETATM 23 O O3 NDP . . . E 2 41.533 -6.382 148.841 1 35.46 ? O3 NDP 501 A 1 HETATM 24 P PN NDP . . . E 2 40.383 -7.132 149.618 1 35.93 ? PN NDP 501 A 1 HETATM 25 O O1N NDP . . . E 2 40.72 -7.086 151.078 1 34.3 ? O1N NDP 501 A 1 HETATM 26 O O2N NDP . . . E 2 40.198 -8.561 149.043 1 32.81 ? O2N NDP 501 A 1 HETATM 27 O O5D NDP . . . E 2 39.048 -6.251 149.355 1 34.69 ? O5D NDP 501 A 1 HETATM 28 C C5D NDP . . . E 2 37.987 -6.753 148.548 1 32.95 ? C5D NDP 501 A 1 HETATM 29 C C4D NDP . . . E 2 36.665 -6.225 149.042 1 32.76 ? C4D NDP 501 A 1 HETATM 30 O O4D NDP . . . E 2 36.742 -6.048 150.435 1 32.57 ? O4D NDP 501 A 1 HETATM 31 C C3D NDP . . . E 2 36.267 -4.865 148.416 1 33.17 ? C3D NDP 501 A 1 HETATM 32 O O3D NDP . . . E 2 34.882 -4.969 147.927 1 34.16 ? O3D NDP 501 A 1 HETATM 33 C C2D NDP . . . E 2 36.507 -3.913 149.595 1 32.57 ? C2D NDP 501 A 1 HETATM 34 O O2D NDP . . . E 2 35.964 -2.597 149.392 1 31.01 ? O2D NDP 501 A 1 HETATM 35 C C1D NDP . . . E 2 36.155 -4.807 150.824 1 33.02 ? C1D NDP 501 A 1 HETATM 36 N N1N NDP . . . E 2 36.697 -4.3 152.107 1 32.83 ? N1N NDP 501 A 1 HETATM 37 C C2N NDP . . . E 2 37.96 -4.628 152.505 1 33.26 ? C2N NDP 501 A 1 HETATM 38 C C3N NDP . . . E 2 38.46 -4.229 153.758 1 34.18 ? C3N NDP 501 A 1 HETATM 39 C C7N NDP . . . E 2 39.799 -4.611 154.228 1 35.84 ? C7N NDP 501 A 1 HETATM 40 O O7N NDP . . . E 2 40.203 -4.263 155.325 1 37.13 ? O7N NDP 501 A 1 HETATM 41 N N7N NDP . . . E 2 40.579 -5.385 153.413 1 35.97 ? N7N NDP 501 A 1 HETATM 42 C C4N NDP . . . E 2 37.629 -3.465 154.602 1 33.18 ? C4N NDP 501 A 1 HETATM 43 C C5N NDP . . . E 2 36.347 -3.094 154.186 1 31.44 ? C5N NDP 501 A 1 HETATM 44 C C6N NDP . . . E 2 35.922 -3.541 152.933 1 31.17 ? C6N NDP 501 A 1 HETATM 45 P P2B NDP . . . E 2 44.765 -7.785 140.532 1 36.72 ? P2B NDP 501 A 1 HETATM 46 O O1X NDP . . . E 2 44.039 -7.681 139.138 1 34.32 ? O1X NDP 501 A 1 HETATM 47 O O2X NDP . . . E 2 46.144 -8.536 140.514 1 33.05 ? O2X NDP 501 A 1 HETATM 48 O O3X NDP . . . E 2 44.969 -6.333 141.064 1 36.81 ? O3X NDP 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #