data_3EY4
#
_model_server_result.job_id            zmxV7pJ9BlToHDd7FqUMoA 
_model_server_result.datetime_utc      '2024-12-22 01:40:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ey4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":502}' 
#
_entry.id    3EY4 
#
_exptl.entry_id    3EY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EY4 
_cell.length_a            49.043 
_cell.length_b            138.482 
_cell.length_c            155.336 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 276 n n 
PA O2A NDP sing 277 n n 
PA O5B NDP sing 278 n n 
PA O3 NDP sing 279 n n 
O2A HOA2 NDP sing 280 n n 
O5B C5B NDP sing 281 n n 
C5B C4B NDP sing 282 n n 
C5B H51A NDP sing 283 n n 
C5B H52A NDP sing 284 n n 
C4B O4B NDP sing 285 n n 
C4B C3B NDP sing 286 n n 
C4B H4B NDP sing 287 n n 
O4B C1B NDP sing 288 n n 
C3B O3B NDP sing 289 n n 
C3B C2B NDP sing 290 n n 
C3B H3B NDP sing 291 n n 
O3B HO3A NDP sing 292 n n 
C2B O2B NDP sing 293 n n 
C2B C1B NDP sing 294 n n 
C2B H2B NDP sing 295 n n 
O2B P2B NDP sing 296 n n 
C1B N9A NDP sing 297 n n 
C1B H1B NDP sing 298 n n 
N9A C8A NDP sing 299 n y 
N9A C4A NDP sing 300 n y 
C8A N7A NDP doub 301 n y 
C8A H8A NDP sing 302 n n 
N7A C5A NDP sing 303 n y 
C5A C6A NDP sing 304 n y 
C5A C4A NDP doub 305 n y 
C6A N6A NDP sing 306 n n 
C6A N1A NDP doub 307 n y 
N6A H61A NDP sing 308 n n 
N6A H62A NDP sing 309 n n 
N1A C2A NDP sing 310 n y 
C2A N3A NDP doub 311 n y 
C2A H2A NDP sing 312 n n 
N3A C4A NDP sing 313 n y 
O3 PN NDP sing 314 n n 
PN O1N NDP doub 315 n n 
PN O2N NDP sing 316 n n 
PN O5D NDP sing 317 n n 
O2N H21N NDP sing 318 n n 
O5D C5D NDP sing 319 n n 
C5D C4D NDP sing 320 n n 
C5D H51N NDP sing 321 n n 
C5D H52N NDP sing 322 n n 
C4D O4D NDP sing 323 n n 
C4D C3D NDP sing 324 n n 
C4D H4D NDP sing 325 n n 
O4D C1D NDP sing 326 n n 
C3D O3D NDP sing 327 n n 
C3D C2D NDP sing 328 n n 
C3D H3D NDP sing 329 n n 
O3D HO3N NDP sing 330 n n 
C2D O2D NDP sing 331 n n 
C2D C1D NDP sing 332 n n 
C2D H2D NDP sing 333 n n 
O2D HO2N NDP sing 334 n n 
C1D N1N NDP sing 335 n n 
C1D H1D NDP sing 336 n n 
N1N C2N NDP sing 337 n n 
N1N C6N NDP sing 338 n n 
C2N C3N NDP doub 339 n n 
C2N H2N NDP sing 340 n n 
C3N C7N NDP sing 341 n n 
C3N C4N NDP sing 342 n n 
C7N O7N NDP doub 343 n n 
C7N N7N NDP sing 344 n n 
N7N H71N NDP sing 345 n n 
N7N H72N NDP sing 346 n n 
C4N C5N NDP sing 347 n n 
C4N H41N NDP sing 348 n n 
C4N H42N NDP sing 349 n n 
C5N C6N NDP doub 350 n n 
C5N H5N NDP sing 351 n n 
C6N H6N NDP sing 352 n n 
P2B O1X NDP doub 353 n n 
P2B O2X NDP sing 354 n n 
P2B O3X NDP sing 355 n n 
O2X HOP2 NDP sing 356 n n 
O3X HOP3 NDP sing 357 n n 
#
_atom_sites.entry_id                     3EY4 
_atom_sites.fract_transf_matrix[1][1]    0.02039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006438 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 501 501 NDP NDP . 
F 3 352 A 1 601 601 352 352 . 
G 2 NDP B 1 502 502 NDP NDP . 
H 3 352 B 1 603 603 352 352 . 
I 2 NDP C 1 503 503 NDP NDP . 
J 3 352 C 1 602 602 352 352 . 
K 2 NDP D 1 504 504 NDP NDP . 
L 3 352 D 1 604 604 352 352 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . G 2 15.793 21.684 137.794 1 36.01 ? PA NDP 502 B 1 
HETATM 2 O O1A NDP . . . G 2 14.81 22.727 137.416 1 37.37 ? O1A NDP 502 B 1 
HETATM 3 O O2A NDP . . . G 2 15.209 20.317 137.684 1 36.19 ? O2A NDP 502 B 1 
HETATM 4 O O5B NDP . . . G 2 17.051 21.747 136.902 1 36.3 ? O5B NDP 502 B 1 
HETATM 5 C C5B NDP . . . G 2 18.181 22.381 137.46 1 36.84 ? C5B NDP 502 B 1 
HETATM 6 C C4B NDP . . . G 2 19.266 22.739 136.413 1 37.58 ? C4B NDP 502 B 1 
HETATM 7 O O4B NDP . . . G 2 20.014 21.666 135.856 1 36.97 ? O4B NDP 502 B 1 
HETATM 8 C C3B NDP . . . G 2 18.83 23.676 135.268 1 36.73 ? C3B NDP 502 B 1 
HETATM 9 O O3B NDP . . . G 2 19.48 24.92 135.658 1 35.16 ? O3B NDP 502 B 1 
HETATM 10 C C2B NDP . . . G 2 19.457 22.969 134.064 1 36.92 ? C2B NDP 502 B 1 
HETATM 11 O O2B NDP . . . G 2 19.835 23.949 133.089 1 37.53 ? O2B NDP 502 B 1 
HETATM 12 C C1B NDP . . . G 2 20.647 22.248 134.751 1 37.04 ? C1B NDP 502 B 1 
HETATM 13 N N9A NDP . . . G 2 21.418 21.233 133.986 1 35.47 ? N9A NDP 502 B 1 
HETATM 14 C C8A NDP . . . G 2 21.062 20.101 133.314 1 34.73 ? C8A NDP 502 B 1 
HETATM 15 N N7A NDP . . . G 2 22.107 19.46 132.723 1 33.37 ? N7A NDP 502 B 1 
HETATM 16 C C5A NDP . . . G 2 23.216 20.232 133.021 1 32.14 ? C5A NDP 502 B 1 
HETATM 17 C C6A NDP . . . G 2 24.578 20.238 132.712 1 31.28 ? C6A NDP 502 B 1 
HETATM 18 N N6A NDP . . . G 2 25.16 19.283 131.977 1 30.37 ? N6A NDP 502 B 1 
HETATM 19 N N1A NDP . . . G 2 25.422 21.258 133.126 1 32.79 ? N1A NDP 502 B 1 
HETATM 20 C C2A NDP . . . G 2 24.929 22.323 133.882 1 33.66 ? C2A NDP 502 B 1 
HETATM 21 N N3A NDP . . . G 2 23.605 22.365 134.238 1 34.01 ? N3A NDP 502 B 1 
HETATM 22 C C4A NDP . . . G 2 22.765 21.343 133.809 1 33.53 ? C4A NDP 502 B 1 
HETATM 23 O O3 NDP . . . G 2 16.166 21.965 139.258 1 38.81 ? O3 NDP 502 B 1 
HETATM 24 P PN NDP . . . G 2 15.78 21.115 140.516 1 39.46 ? PN NDP 502 B 1 
HETATM 25 O O1N NDP . . . G 2 15.75 19.643 140.241 1 37.98 ? O1N NDP 502 B 1 
HETATM 26 O O2N NDP . . . G 2 14.459 21.568 141.025 1 40.71 ? O2N NDP 502 B 1 
HETATM 27 O O5D NDP . . . G 2 16.897 21.497 141.546 1 40.73 ? O5D NDP 502 B 1 
HETATM 28 C C5D NDP . . . G 2 18.238 21.075 141.335 1 39.11 ? C5D NDP 502 B 1 
HETATM 29 C C4D NDP . . . G 2 18.834 20.444 142.597 1 38.17 ? C4D NDP 502 B 1 
HETATM 30 O O4D NDP . . . G 2 17.884 20.248 143.637 1 37.34 ? O4D NDP 502 B 1 
HETATM 31 C C3D NDP . . . G 2 19.497 19.102 142.219 1 36.85 ? C3D NDP 502 B 1 
HETATM 32 O O3D NDP . . . G 2 20.812 19.044 142.82 1 35.61 ? O3D NDP 502 B 1 
HETATM 33 C C2D NDP . . . G 2 18.544 18.102 142.779 1 37.03 ? C2D NDP 502 B 1 
HETATM 34 O O2D NDP . . . G 2 19.45 16.971 142.873 1 35.85 ? O2D NDP 502 B 1 
HETATM 35 C C1D NDP . . . G 2 17.944 18.897 144.028 1 37.37 ? C1D NDP 502 B 1 
HETATM 36 N N1N NDP . . . G 2 16.636 18.349 144.388 1 37.22 ? N1N NDP 502 B 1 
HETATM 37 C C2N NDP . . . G 2 15.471 18.621 143.687 1 36.99 ? C2N NDP 502 B 1 
HETATM 38 C C3N NDP . . . G 2 14.231 18.074 144.155 1 38.2 ? C3N NDP 502 B 1 
HETATM 39 C C7N NDP . . . G 2 12.879 18.478 143.723 1 38.96 ? C7N NDP 502 B 1 
HETATM 40 O O7N NDP . . . G 2 11.867 17.961 144.212 1 38.68 ? O7N NDP 502 B 1 
HETATM 41 N N7N NDP . . . G 2 12.799 19.513 142.823 1 39.28 ? N7N NDP 502 B 1 
HETATM 42 C C4N NDP . . . G 2 14.234 17.227 145.286 1 37.61 ? C4N NDP 502 B 1 
HETATM 43 C C5N NDP . . . G 2 15.412 16.972 145.993 1 36.43 ? C5N NDP 502 B 1 
HETATM 44 C C6N NDP . . . G 2 16.592 17.556 145.513 1 36.48 ? C6N NDP 502 B 1 
HETATM 45 P P2B NDP . . . G 2 20.247 23.549 131.61 1 37.86 ? P2B NDP 502 B 1 
HETATM 46 O O1X NDP . . . G 2 21.784 23.356 131.715 1 34.71 ? O1X NDP 502 B 1 
HETATM 47 O O2X NDP . . . G 2 19.869 24.793 130.737 1 34.76 ? O2X NDP 502 B 1 
HETATM 48 O O3X NDP . . . G 2 19.527 22.234 131.19 1 34.28 ? O3X NDP 502 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#