data_3EY4
#
_model_server_result.job_id            '_rJPCfAM7Ap4moOBTbWOPw' 
_model_server_result.datetime_utc      '2024-11-05 00:34:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ey4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":503}' 
#
_entry.id    3EY4 
#
_exptl.entry_id    3EY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EY4 
_cell.length_a            49.043 
_cell.length_b            138.482 
_cell.length_c            155.336 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 276 n n 
PA O2A NDP sing 277 n n 
PA O5B NDP sing 278 n n 
PA O3 NDP sing 279 n n 
O2A HOA2 NDP sing 280 n n 
O5B C5B NDP sing 281 n n 
C5B C4B NDP sing 282 n n 
C5B H51A NDP sing 283 n n 
C5B H52A NDP sing 284 n n 
C4B O4B NDP sing 285 n n 
C4B C3B NDP sing 286 n n 
C4B H4B NDP sing 287 n n 
O4B C1B NDP sing 288 n n 
C3B O3B NDP sing 289 n n 
C3B C2B NDP sing 290 n n 
C3B H3B NDP sing 291 n n 
O3B HO3A NDP sing 292 n n 
C2B O2B NDP sing 293 n n 
C2B C1B NDP sing 294 n n 
C2B H2B NDP sing 295 n n 
O2B P2B NDP sing 296 n n 
C1B N9A NDP sing 297 n n 
C1B H1B NDP sing 298 n n 
N9A C8A NDP sing 299 n y 
N9A C4A NDP sing 300 n y 
C8A N7A NDP doub 301 n y 
C8A H8A NDP sing 302 n n 
N7A C5A NDP sing 303 n y 
C5A C6A NDP sing 304 n y 
C5A C4A NDP doub 305 n y 
C6A N6A NDP sing 306 n n 
C6A N1A NDP doub 307 n y 
N6A H61A NDP sing 308 n n 
N6A H62A NDP sing 309 n n 
N1A C2A NDP sing 310 n y 
C2A N3A NDP doub 311 n y 
C2A H2A NDP sing 312 n n 
N3A C4A NDP sing 313 n y 
O3 PN NDP sing 314 n n 
PN O1N NDP doub 315 n n 
PN O2N NDP sing 316 n n 
PN O5D NDP sing 317 n n 
O2N H21N NDP sing 318 n n 
O5D C5D NDP sing 319 n n 
C5D C4D NDP sing 320 n n 
C5D H51N NDP sing 321 n n 
C5D H52N NDP sing 322 n n 
C4D O4D NDP sing 323 n n 
C4D C3D NDP sing 324 n n 
C4D H4D NDP sing 325 n n 
O4D C1D NDP sing 326 n n 
C3D O3D NDP sing 327 n n 
C3D C2D NDP sing 328 n n 
C3D H3D NDP sing 329 n n 
O3D HO3N NDP sing 330 n n 
C2D O2D NDP sing 331 n n 
C2D C1D NDP sing 332 n n 
C2D H2D NDP sing 333 n n 
O2D HO2N NDP sing 334 n n 
C1D N1N NDP sing 335 n n 
C1D H1D NDP sing 336 n n 
N1N C2N NDP sing 337 n n 
N1N C6N NDP sing 338 n n 
C2N C3N NDP doub 339 n n 
C2N H2N NDP sing 340 n n 
C3N C7N NDP sing 341 n n 
C3N C4N NDP sing 342 n n 
C7N O7N NDP doub 343 n n 
C7N N7N NDP sing 344 n n 
N7N H71N NDP sing 345 n n 
N7N H72N NDP sing 346 n n 
C4N C5N NDP sing 347 n n 
C4N H41N NDP sing 348 n n 
C4N H42N NDP sing 349 n n 
C5N C6N NDP doub 350 n n 
C5N H5N NDP sing 351 n n 
C6N H6N NDP sing 352 n n 
P2B O1X NDP doub 353 n n 
P2B O2X NDP sing 354 n n 
P2B O3X NDP sing 355 n n 
O2X HOP2 NDP sing 356 n n 
O3X HOP3 NDP sing 357 n n 
#
_atom_sites.entry_id                     3EY4 
_atom_sites.fract_transf_matrix[1][1]    0.02039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006438 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 501 501 NDP NDP . 
F 3 352 A 1 601 601 352 352 . 
G 2 NDP B 1 502 502 NDP NDP . 
H 3 352 B 1 603 603 352 352 . 
I 2 NDP C 1 503 503 NDP NDP . 
J 3 352 C 1 602 602 352 352 . 
K 2 NDP D 1 504 504 NDP NDP . 
L 3 352 D 1 604 604 352 352 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . I 2 1.266 -17.582 121.142 1 34.84 ? PA NDP 503 C 1 
HETATM 2 O O1A NDP . . . I 2 0.08 -18.506 121.157 1 32.78 ? O1A NDP 503 C 1 
HETATM 3 O O2A NDP . . . I 2 1.028 -16.436 122.09 1 35.42 ? O2A NDP 503 C 1 
HETATM 4 O O5B NDP . . . I 2 2.6 -18.377 121.484 1 35.25 ? O5B NDP 503 C 1 
HETATM 5 C C5B NDP . . . I 2 3.794 -17.7 121.878 1 34.45 ? C5B NDP 503 C 1 
HETATM 6 C C4B NDP . . . I 2 4.807 -18.735 122.311 1 34.25 ? C4B NDP 503 C 1 
HETATM 7 O O4B NDP . . . I 2 6.086 -18.188 122.599 1 33.45 ? O4B NDP 503 C 1 
HETATM 8 C C3B NDP . . . I 2 4.308 -19.427 123.561 1 33.9 ? C3B NDP 503 C 1 
HETATM 9 O O3B NDP . . . I 2 4.323 -20.855 123.371 1 34.96 ? O3B NDP 503 C 1 
HETATM 10 C C2B NDP . . . I 2 5.242 -18.819 124.597 1 33.66 ? C2B NDP 503 C 1 
HETATM 11 O O2B NDP . . . I 2 5.464 -19.687 125.699 1 34.69 ? O2B NDP 503 C 1 
HETATM 12 C C1B NDP . . . I 2 6.554 -18.435 123.893 1 32.71 ? C1B NDP 503 C 1 
HETATM 13 N N9A NDP . . . I 2 7.064 -17.167 124.453 1 31.26 ? N9A NDP 503 C 1 
HETATM 14 C C8A NDP . . . I 2 6.333 -16.085 124.698 1 30.96 ? C8A NDP 503 C 1 
HETATM 15 N N7A NDP . . . I 2 7.005 -15.09 125.264 1 32.1 ? N7A NDP 503 C 1 
HETATM 16 C C5A NDP . . . I 2 8.291 -15.523 125.396 1 32.55 ? C5A NDP 503 C 1 
HETATM 17 C C6A NDP . . . I 2 9.484 -14.966 125.874 1 34.89 ? C6A NDP 503 C 1 
HETATM 18 N N6A NDP . . . I 2 9.459 -13.702 126.394 1 36.41 ? N6A NDP 503 C 1 
HETATM 19 N N1A NDP . . . I 2 10.696 -15.655 125.854 1 33.56 ? N1A NDP 503 C 1 
HETATM 20 C C2A NDP . . . I 2 10.68 -16.937 125.351 1 32.65 ? C2A NDP 503 C 1 
HETATM 21 N N3A NDP . . . I 2 9.528 -17.509 124.879 1 31.51 ? N3A NDP 503 C 1 
HETATM 22 C C4A NDP . . . I 2 8.34 -16.834 124.885 1 30.81 ? C4A NDP 503 C 1 
HETATM 23 O O3 NDP . . . I 2 1.56 -17.035 119.737 1 34.5 ? O3 NDP 503 C 1 
HETATM 24 P PN NDP . . . I 2 0.859 -17.254 118.374 1 35.73 ? PN NDP 503 C 1 
HETATM 25 O O1N NDP . . . I 2 0.165 -15.973 117.964 1 35.13 ? O1N NDP 503 C 1 
HETATM 26 O O2N NDP . . . I 2 -0.148 -18.369 118.391 1 36.47 ? O2N NDP 503 C 1 
HETATM 27 O O5D NDP . . . I 2 1.929 -17.802 117.387 1 35.56 ? O5D NDP 503 C 1 
HETATM 28 C C5D NDP . . . I 2 3.299 -17.449 117.384 1 33.62 ? C5D NDP 503 C 1 
HETATM 29 C C4D NDP . . . I 2 3.374 -16.522 116.2 1 32.19 ? C4D NDP 503 C 1 
HETATM 30 O O4D NDP . . . I 2 3.103 -16.842 114.837 1 29.09 ? O4D NDP 503 C 1 
HETATM 31 C C3D NDP . . . I 2 4.45 -15.486 116.228 1 31.29 ? C3D NDP 503 C 1 
HETATM 32 O O3D NDP . . . I 2 5.717 -15.725 115.594 1 31.7 ? O3D NDP 503 C 1 
HETATM 33 C C2D NDP . . . I 2 3.743 -14.548 115.316 1 29.7 ? C2D NDP 503 C 1 
HETATM 34 O O2D NDP . . . I 2 4.603 -13.442 115.069 1 28.39 ? O2D NDP 503 C 1 
HETATM 35 C C1D NDP . . . I 2 3.137 -15.554 114.252 1 29.15 ? C1D NDP 503 C 1 
HETATM 36 N N1N NDP . . . I 2 1.818 -15.004 113.937 1 28.33 ? N1N NDP 503 C 1 
HETATM 37 C C2N NDP . . . I 2 0.665 -15.302 114.596 1 26.85 ? C2N NDP 503 C 1 
HETATM 38 C C3N NDP . . . I 2 -0.55 -14.721 114.183 1 27.35 ? C3N NDP 503 C 1 
HETATM 39 C C7N NDP . . . I 2 -1.828 -14.94 114.856 1 26.47 ? C7N NDP 503 C 1 
HETATM 40 O O7N NDP . . . I 2 -2.798 -14.303 114.5 1 27.47 ? O7N NDP 503 C 1 
HETATM 41 N N7N NDP . . . I 2 -1.883 -15.818 115.883 1 25.18 ? N7N NDP 503 C 1 
HETATM 42 C C4N NDP . . . I 2 -0.549 -13.825 113.082 1 27.85 ? C4N NDP 503 C 1 
HETATM 43 C C5N NDP . . . I 2 0.635 -13.488 112.411 1 26.59 ? C5N NDP 503 C 1 
HETATM 44 C C6N NDP . . . I 2 1.786 -14.11 112.881 1 27.82 ? C6N NDP 503 C 1 
HETATM 45 P P2B NDP . . . I 2 5.684 -19.035 127.114 1 34.25 ? P2B NDP 503 C 1 
HETATM 46 O O1X NDP . . . I 2 7.182 -18.756 127.244 1 32.74 ? O1X NDP 503 C 1 
HETATM 47 O O2X NDP . . . I 2 5.217 -20.084 128.147 1 33.66 ? O2X NDP 503 C 1 
HETATM 48 O O3X NDP . . . I 2 4.861 -17.721 127.207 1 33.34 ? O3X NDP 503 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#