data_3EY9
#
_model_server_result.job_id            rxlYxrec7l_nWGCyXxi1CA 
_model_server_result.datetime_utc      '2024-11-09 02:33:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ey9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":612}' 
#
_entry.id    3EY9 
#
_exptl.entry_id    3EY9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EY9 
_cell.length_a            151.37 
_cell.length_b            151.37 
_cell.length_c            153.74 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 433 A ASP 433 1_555 F MG MG . A MG 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc2 A OD1 ASN 460 A ASN 460 1_555 F MG MG . A MG 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc3 C O1A TPP . A TPP 611 1_555 F MG MG . A MG 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc4 C O1B TPP . A TPP 611 1_555 F MG MG . A MG 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc5 B OD1 ASP 433 B ASP 433 1_555 I MG MG . B MG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc6 B OD1 ASN 460 B ASN 460 1_555 I MG MG . B MG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc7 G O2A TPP . B TPP 611 1_555 I MG MG . B MG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc8 G O3B TPP . B TPP 611 1_555 I MG MG . B MG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     3EY9 
_atom_sites.fract_transf_matrix[1][1]    0.006606 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006606 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TPP A 1 611 611 TPP TDP . 
D 3 FAD A 1 612 612 FAD FAD . 
E 4 SO4 A 1 621 621 SO4 SO4 . 
F 5 MG A 1 616 616 MG MG2 . 
G 2 TPP B 1 611 611 TPP TDP . 
H 3 FAD B 1 612 612 FAD FAD . 
I 5 MG B 1 617 617 MG MG2 . 
J 4 SO4 B 1 621 621 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 3 34.615 27.038 24.155 1 70.03 ? PA FAD 612 A 1 
HETATM 2 O O1A FAD . . . D 3 35.968 27.223 24.806 1 84.49 ? O1A FAD 612 A 1 
HETATM 3 O O2A FAD . . . D 3 34.41 27.405 22.709 1 79.64 ? O2A FAD 612 A 1 
HETATM 4 O O5B FAD . . . D 3 33.535 27.803 25.056 1 63.53 ? O5B FAD 612 A 1 
HETATM 5 C C5B FAD . . . D 3 33.692 29.191 25.334 1 64.9 ? C5B FAD 612 A 1 
HETATM 6 C C4B FAD . . . D 3 32.32 29.857 25.375 1 65.07 ? C4B FAD 612 A 1 
HETATM 7 O O4B FAD . . . D 3 32.114 30.564 26.601 1 55.36 ? O4B FAD 612 A 1 
HETATM 8 C C3B FAD . . . D 3 32.218 30.884 24.268 1 65.08 ? C3B FAD 612 A 1 
HETATM 9 O O3B FAD . . . D 3 30.902 30.818 23.732 1 60.09 ? O3B FAD 612 A 1 
HETATM 10 C C2B FAD . . . D 3 32.467 32.213 24.963 1 60.85 ? C2B FAD 612 A 1 
HETATM 11 O O2B FAD . . . D 3 31.762 33.289 24.345 1 68.53 ? O2B FAD 612 A 1 
HETATM 12 C C1B FAD . . . D 3 31.938 31.963 26.352 1 59.76 ? C1B FAD 612 A 1 
HETATM 13 N N9A FAD . . . D 3 32.673 32.714 27.381 1 65.32 ? N9A FAD 612 A 1 
HETATM 14 C C8A FAD . . . D 3 33.997 32.863 27.483 1 58.25 ? C8A FAD 612 A 1 
HETATM 15 N N7A FAD . . . D 3 34.262 33.603 28.585 1 53.74 ? N7A FAD 612 A 1 
HETATM 16 C C5A FAD . . . D 3 33.089 33.895 29.173 1 68.42 ? C5A FAD 612 A 1 
HETATM 17 C C6A FAD . . . D 3 32.736 34.611 30.305 1 78.79 ? C6A FAD 612 A 1 
HETATM 18 N N6A FAD . . . D 3 33.699 35.173 31.068 1 74.62 ? N6A FAD 612 A 1 
HETATM 19 N N1A FAD . . . D 3 31.427 34.74 30.633 1 79.93 ? N1A FAD 612 A 1 
HETATM 20 C C2A FAD . . . D 3 30.478 34.174 29.872 1 79.67 ? C2A FAD 612 A 1 
HETATM 21 N N3A FAD . . . D 3 30.788 33.477 28.77 1 74.26 ? N3A FAD 612 A 1 
HETATM 22 C C4A FAD . . . D 3 32.088 33.327 28.408 1 74 ? C4A FAD 612 A 1 
HETATM 23 N N1 FAD . . . D 3 33.263 18.034 23.451 1 65.55 ? N1 FAD 612 A 1 
HETATM 24 C C2 FAD . . . D 3 32.357 17.523 24.314 1 69.92 ? C2 FAD 612 A 1 
HETATM 25 O O2 FAD . . . D 3 31.9 18.231 25.251 1 68.71 ? O2 FAD 612 A 1 
HETATM 26 N N3 FAD . . . D 3 31.944 16.244 24.171 1 69.33 ? N3 FAD 612 A 1 
HETATM 27 C C4 FAD . . . D 3 32.412 15.452 23.18 1 68.78 ? C4 FAD 612 A 1 
HETATM 28 O O4 FAD . . . D 3 31.994 14.271 23.073 1 64.3 ? O4 FAD 612 A 1 
HETATM 29 C C4X FAD . . . D 3 33.349 15.967 22.288 1 67.33 ? C4X FAD 612 A 1 
HETATM 30 N N5 FAD . . . D 3 33.87 15.212 21.289 1 59.41 ? N5 FAD 612 A 1 
HETATM 31 C C5X FAD . . . D 3 35.038 15.629 20.733 1 72.23 ? C5X FAD 612 A 1 
HETATM 32 C C6 FAD . . . D 3 35.842 14.757 19.997 1 66.13 ? C6 FAD 612 A 1 
HETATM 33 C C7 FAD . . . D 3 37.033 15.226 19.436 1 64.76 ? C7 FAD 612 A 1 
HETATM 34 C C7M FAD . . . D 3 37.915 14.306 18.641 1 49.24 ? C7M FAD 612 A 1 
HETATM 35 C C8 FAD . . . D 3 37.426 16.548 19.594 1 68.01 ? C8 FAD 612 A 1 
HETATM 36 C C8M FAD . . . D 3 38.719 17.017 18.964 1 52.28 ? C8M FAD 612 A 1 
HETATM 37 C C9 FAD . . . D 3 36.627 17.425 20.33 1 57.3 ? C9 FAD 612 A 1 
HETATM 38 C C9A FAD . . . D 3 35.443 16.962 20.897 1 69.89 ? C9A FAD 612 A 1 
HETATM 39 N N10 FAD . . . D 3 34.68 17.802 21.6 1 71.89 ? N10 FAD 612 A 1 
HETATM 40 C C10 FAD . . . D 3 33.769 17.285 22.445 1 68.3 ? C10 FAD 612 A 1 
HETATM 41 C C1' FAD . . . D 3 35.127 19.189 21.753 1 65.58 ? C1' FAD 612 A 1 
HETATM 42 C C2' FAD . . . D 3 34.078 20.113 21.14 1 58.48 ? C2' FAD 612 A 1 
HETATM 43 O O2' FAD . . . D 3 34.388 20.286 19.765 1 57.64 ? O2' FAD 612 A 1 
HETATM 44 C C3' FAD . . . D 3 34.12 21.491 21.757 1 46.01 ? C3' FAD 612 A 1 
HETATM 45 O O3' FAD . . . D 3 35.473 21.937 21.764 1 54.19 ? O3' FAD 612 A 1 
HETATM 46 C C4' FAD . . . D 3 33.617 21.519 23.187 1 51.14 ? C4' FAD 612 A 1 
HETATM 47 O O4' FAD . . . D 3 32.407 20.777 23.248 1 65.53 ? O4' FAD 612 A 1 
HETATM 48 C C5' FAD . . . D 3 33.312 22.96 23.528 1 48.95 ? C5' FAD 612 A 1 
HETATM 49 O O5' FAD . . . D 3 33.608 23.276 24.871 1 50.44 ? O5' FAD 612 A 1 
HETATM 50 P P FAD . . . D 3 33.225 24.769 25.309 1 68.49 ? P FAD 612 A 1 
HETATM 51 O O1P FAD . . . D 3 33.637 24.938 26.743 1 73.16 ? O1P FAD 612 A 1 
HETATM 52 O O2P FAD . . . D 3 31.796 25.061 24.911 1 76.24 ? O2P FAD 612 A 1 
HETATM 53 O O3P FAD . . . D 3 34.282 25.472 24.311 1 93.01 ? O3P FAD 612 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           53 
#