data_3EYD # _model_server_result.job_id Gas0ijjY-1h4FPLs6IljEw _model_server_result.datetime_utc '2024-10-13 04:20:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 3EYD # _exptl.entry_id 3EYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EYD _cell.length_a 224.483 _cell.length_b 224.483 _cell.length_c 75.786 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,I 1 1 C,D,G,J,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 150 A SER 139 1_555 F B36 BE8 . A BE8 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A SG CYS 108 A CYS 97 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A SG CYS 110 A CYS 99 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc3 A SG CYS 156 A CYS 145 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc4 C SG CYS 108 C CYS 97 1_555 G ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 C SG CYS 156 C CYS 145 1_555 G ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc6 J O HOH . C HOH 190 1_555 G ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EYD _atom_sites.fract_transf_matrix[1][1] 0.004455 _atom_sites.fract_transf_matrix[1][2] 0.002572 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 901 901 ZN ZN . F 4 BE8 A 1 401 401 BE8 BE8 . G 3 ZN C 1 901 901 ZN ZN . H 5 HOH A 1 190 190 HOH HOH . H 5 HOH A 2 191 4 HOH HOH . H 5 HOH A 3 192 192 HOH HOH . H 5 HOH A 4 193 6 HOH HOH . H 5 HOH A 5 194 194 HOH HOH . H 5 HOH A 6 195 195 HOH HOH . H 5 HOH A 7 196 196 HOH HOH . H 5 HOH A 8 197 7 HOH HOH . H 5 HOH A 9 198 198 HOH HOH . H 5 HOH A 10 199 10 HOH HOH . H 5 HOH A 11 200 12 HOH HOH . H 5 HOH A 12 201 13 HOH HOH . H 5 HOH A 13 202 14 HOH HOH . H 5 HOH A 14 203 203 HOH HOH . H 5 HOH A 15 204 204 HOH HOH . H 5 HOH A 16 205 205 HOH HOH . H 5 HOH A 17 206 206 HOH HOH . H 5 HOH A 18 207 15 HOH HOH . H 5 HOH A 19 208 208 HOH HOH . H 5 HOH A 20 209 16 HOH HOH . H 5 HOH A 21 210 210 HOH HOH . H 5 HOH A 22 211 21 HOH HOH . H 5 HOH A 23 212 212 HOH HOH . H 5 HOH A 24 213 22 HOH HOH . H 5 HOH A 25 214 214 HOH HOH . H 5 HOH A 26 215 215 HOH HOH . H 5 HOH A 27 216 216 HOH HOH . H 5 HOH A 28 217 23 HOH HOH . H 5 HOH A 29 218 24 HOH HOH . H 5 HOH A 30 219 25 HOH HOH . H 5 HOH A 31 220 28 HOH HOH . H 5 HOH A 32 221 29 HOH HOH . H 5 HOH A 33 222 222 HOH HOH . H 5 HOH A 34 223 30 HOH HOH . H 5 HOH A 35 224 224 HOH HOH . H 5 HOH A 36 225 225 HOH HOH . H 5 HOH A 37 226 34 HOH HOH . H 5 HOH A 38 227 36 HOH HOH . H 5 HOH A 39 228 228 HOH HOH . H 5 HOH A 40 229 38 HOH HOH . H 5 HOH A 41 230 39 HOH HOH . H 5 HOH A 42 231 231 HOH HOH . H 5 HOH A 43 232 232 HOH HOH . H 5 HOH A 44 233 40 HOH HOH . H 5 HOH A 45 234 41 HOH HOH . H 5 HOH A 46 235 42 HOH HOH . H 5 HOH A 47 236 43 HOH HOH . H 5 HOH A 48 237 237 HOH HOH . H 5 HOH A 49 238 238 HOH HOH . H 5 HOH A 50 239 50 HOH HOH . H 5 HOH A 51 240 240 HOH HOH . H 5 HOH A 52 241 57 HOH HOH . H 5 HOH A 53 242 59 HOH HOH . H 5 HOH A 54 243 243 HOH HOH . H 5 HOH A 55 244 61 HOH HOH . H 5 HOH A 56 245 245 HOH HOH . H 5 HOH A 57 246 246 HOH HOH . H 5 HOH A 58 247 63 HOH HOH . H 5 HOH A 59 248 66 HOH HOH . H 5 HOH A 60 249 249 HOH HOH . H 5 HOH A 61 250 250 HOH HOH . H 5 HOH A 62 251 69 HOH HOH . H 5 HOH A 63 252 70 HOH HOH . H 5 HOH A 64 253 71 HOH HOH . H 5 HOH A 65 254 254 HOH HOH . H 5 HOH A 66 255 255 HOH HOH . H 5 HOH A 67 256 256 HOH HOH . H 5 HOH A 68 257 72 HOH HOH . H 5 HOH A 69 258 74 HOH HOH . H 5 HOH A 70 259 77 HOH HOH . H 5 HOH A 71 260 81 HOH HOH . H 5 HOH A 72 261 82 HOH HOH . H 5 HOH A 73 262 83 HOH HOH . H 5 HOH A 74 263 84 HOH HOH . H 5 HOH A 75 264 85 HOH HOH . H 5 HOH A 76 265 86 HOH HOH . H 5 HOH A 77 266 87 HOH HOH . H 5 HOH A 78 267 88 HOH HOH . H 5 HOH A 79 268 90 HOH HOH . H 5 HOH A 80 269 91 HOH HOH . H 5 HOH A 81 270 93 HOH HOH . H 5 HOH A 82 271 95 HOH HOH . H 5 HOH A 83 272 96 HOH HOH . H 5 HOH A 84 273 100 HOH HOH . H 5 HOH A 85 274 102 HOH HOH . H 5 HOH A 86 275 103 HOH HOH . H 5 HOH A 87 276 104 HOH HOH . H 5 HOH A 88 277 105 HOH HOH . H 5 HOH A 89 278 106 HOH HOH . H 5 HOH A 90 279 107 HOH HOH . H 5 HOH A 91 280 109 HOH HOH . H 5 HOH A 92 281 112 HOH HOH . H 5 HOH A 93 282 114 HOH HOH . H 5 HOH A 94 283 115 HOH HOH . H 5 HOH A 95 284 119 HOH HOH . H 5 HOH A 96 285 121 HOH HOH . H 5 HOH A 97 286 122 HOH HOH . H 5 HOH A 98 287 124 HOH HOH . H 5 HOH A 99 288 125 HOH HOH . H 5 HOH A 100 289 126 HOH HOH . H 5 HOH A 101 290 127 HOH HOH . H 5 HOH A 102 291 131 HOH HOH . H 5 HOH A 103 292 134 HOH HOH . H 5 HOH A 104 293 135 HOH HOH . H 5 HOH A 105 294 136 HOH HOH . H 5 HOH A 106 295 137 HOH HOH . H 5 HOH A 107 296 138 HOH HOH . H 5 HOH A 108 297 144 HOH HOH . H 5 HOH A 109 298 147 HOH HOH . H 5 HOH A 110 299 148 HOH HOH . H 5 HOH A 111 300 149 HOH HOH . H 5 HOH A 112 301 150 HOH HOH . H 5 HOH A 113 302 152 HOH HOH . H 5 HOH A 114 303 154 HOH HOH . H 5 HOH A 115 304 156 HOH HOH . H 5 HOH A 116 305 157 HOH HOH . H 5 HOH A 117 306 159 HOH HOH . H 5 HOH A 118 307 161 HOH HOH . H 5 HOH A 119 308 163 HOH HOH . H 5 HOH A 120 309 164 HOH HOH . H 5 HOH A 121 310 167 HOH HOH . H 5 HOH A 122 311 172 HOH HOH . H 5 HOH A 123 312 173 HOH HOH . H 5 HOH A 124 313 175 HOH HOH . H 5 HOH A 125 314 177 HOH HOH . H 5 HOH A 126 315 178 HOH HOH . H 5 HOH A 127 316 180 HOH HOH . H 5 HOH A 128 317 181 HOH HOH . H 5 HOH A 129 318 182 HOH HOH . H 5 HOH A 130 319 184 HOH HOH . H 5 HOH A 131 320 187 HOH HOH . H 5 HOH A 132 321 188 HOH HOH . H 5 HOH A 133 322 189 HOH HOH . H 5 HOH A 134 323 49 HOH HOH . H 5 HOH A 135 324 54 HOH HOH . H 5 HOH A 136 325 236 HOH HOH . I 5 HOH B 1 3 3 HOH HOH . I 5 HOH B 2 17 17 HOH HOH . I 5 HOH B 3 18 18 HOH HOH . I 5 HOH B 4 53 53 HOH HOH . I 5 HOH B 5 55 55 HOH HOH . I 5 HOH B 6 97 97 HOH HOH . I 5 HOH B 7 128 128 HOH HOH . I 5 HOH B 8 139 139 HOH HOH . I 5 HOH B 9 179 179 HOH HOH . I 5 HOH B 10 218 218 HOH HOH . I 5 HOH B 11 229 229 HOH HOH . I 5 HOH B 12 234 234 HOH HOH . J 5 HOH C 1 190 1 HOH HOH . J 5 HOH C 2 191 191 HOH HOH . J 5 HOH C 3 192 2 HOH HOH . J 5 HOH C 4 193 193 HOH HOH . J 5 HOH C 5 194 5 HOH HOH . J 5 HOH C 6 195 8 HOH HOH . J 5 HOH C 7 196 11 HOH HOH . J 5 HOH C 8 197 197 HOH HOH . J 5 HOH C 9 198 19 HOH HOH . J 5 HOH C 10 199 26 HOH HOH . J 5 HOH C 11 200 200 HOH HOH . J 5 HOH C 12 201 201 HOH HOH . J 5 HOH C 13 202 202 HOH HOH . J 5 HOH C 14 203 27 HOH HOH . J 5 HOH C 15 204 31 HOH HOH . J 5 HOH C 16 205 32 HOH HOH . J 5 HOH C 17 206 35 HOH HOH . J 5 HOH C 18 207 207 HOH HOH . J 5 HOH C 19 208 37 HOH HOH . J 5 HOH C 20 209 209 HOH HOH . J 5 HOH C 21 210 44 HOH HOH . J 5 HOH C 22 211 211 HOH HOH . J 5 HOH C 23 212 45 HOH HOH . J 5 HOH C 24 213 46 HOH HOH . J 5 HOH C 25 214 47 HOH HOH . J 5 HOH C 26 215 48 HOH HOH . J 5 HOH C 27 216 51 HOH HOH . J 5 HOH C 28 217 217 HOH HOH . J 5 HOH C 29 218 52 HOH HOH . J 5 HOH C 30 219 219 HOH HOH . J 5 HOH C 31 220 220 HOH HOH . J 5 HOH C 32 221 56 HOH HOH . J 5 HOH C 33 222 58 HOH HOH . J 5 HOH C 34 223 60 HOH HOH . J 5 HOH C 35 224 67 HOH HOH . J 5 HOH C 36 225 68 HOH HOH . J 5 HOH C 37 226 226 HOH HOH . J 5 HOH C 38 227 227 HOH HOH . J 5 HOH C 39 228 73 HOH HOH . J 5 HOH C 40 229 75 HOH HOH . J 5 HOH C 41 230 230 HOH HOH . J 5 HOH C 42 231 76 HOH HOH . J 5 HOH C 43 232 78 HOH HOH . J 5 HOH C 44 233 233 HOH HOH . J 5 HOH C 45 234 79 HOH HOH . J 5 HOH C 46 235 235 HOH HOH . J 5 HOH C 47 236 89 HOH HOH . J 5 HOH C 48 237 94 HOH HOH . J 5 HOH C 49 238 98 HOH HOH . J 5 HOH C 50 239 239 HOH HOH . J 5 HOH C 51 240 99 HOH HOH . J 5 HOH C 52 241 241 HOH HOH . J 5 HOH C 53 242 242 HOH HOH . J 5 HOH C 54 243 101 HOH HOH . J 5 HOH C 55 244 244 HOH HOH . J 5 HOH C 56 245 108 HOH HOH . J 5 HOH C 57 246 110 HOH HOH . J 5 HOH C 58 247 247 HOH HOH . J 5 HOH C 59 248 248 HOH HOH . J 5 HOH C 60 249 111 HOH HOH . J 5 HOH C 61 250 113 HOH HOH . J 5 HOH C 62 251 251 HOH HOH . J 5 HOH C 63 252 252 HOH HOH . J 5 HOH C 64 253 253 HOH HOH . J 5 HOH C 65 254 116 HOH HOH . J 5 HOH C 66 255 117 HOH HOH . J 5 HOH C 67 256 118 HOH HOH . J 5 HOH C 68 257 257 HOH HOH . J 5 HOH C 69 258 120 HOH HOH . J 5 HOH C 70 259 123 HOH HOH . J 5 HOH C 71 260 129 HOH HOH . J 5 HOH C 72 261 130 HOH HOH . J 5 HOH C 73 262 132 HOH HOH . J 5 HOH C 74 263 133 HOH HOH . J 5 HOH C 75 264 141 HOH HOH . J 5 HOH C 76 265 142 HOH HOH . J 5 HOH C 77 266 143 HOH HOH . J 5 HOH C 78 267 145 HOH HOH . J 5 HOH C 79 268 146 HOH HOH . J 5 HOH C 80 269 151 HOH HOH . J 5 HOH C 81 270 153 HOH HOH . J 5 HOH C 82 271 155 HOH HOH . J 5 HOH C 83 272 158 HOH HOH . J 5 HOH C 84 273 160 HOH HOH . J 5 HOH C 85 274 162 HOH HOH . J 5 HOH C 86 275 165 HOH HOH . J 5 HOH C 87 276 166 HOH HOH . J 5 HOH C 88 277 168 HOH HOH . J 5 HOH C 89 278 169 HOH HOH . J 5 HOH C 90 279 170 HOH HOH . J 5 HOH C 91 280 171 HOH HOH . J 5 HOH C 92 281 174 HOH HOH . J 5 HOH C 93 282 176 HOH HOH . J 5 HOH C 94 283 183 HOH HOH . J 5 HOH C 95 284 185 HOH HOH . J 5 HOH C 96 285 223 HOH HOH . K 5 HOH D 1 9 9 HOH HOH . K 5 HOH D 2 42 20 HOH HOH . K 5 HOH D 3 43 33 HOH HOH . K 5 HOH D 4 62 62 HOH HOH . K 5 HOH D 5 64 64 HOH HOH . K 5 HOH D 6 65 65 HOH HOH . K 5 HOH D 7 80 80 HOH HOH . K 5 HOH D 8 92 92 HOH HOH . K 5 HOH D 9 140 140 HOH HOH . K 5 HOH D 10 186 186 HOH HOH . K 5 HOH D 11 199 199 HOH HOH . K 5 HOH D 12 213 213 HOH HOH . K 5 HOH D 13 221 221 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 182.205 _atom_site.Cartn_y 8.473 _atom_site.Cartn_z 64.552 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 901 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #