data_3EYL
#
_model_server_result.job_id            qngpNzno-n73H-THUekkaQ 
_model_server_result.datetime_utc      '2024-12-03 23:02:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eyl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    3EYL 
#
_exptl.entry_id    3EYL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.652 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S,6S,7R,9aS)-6-{[(2S)-2-aminobutanoyl]amino}-7-(2-aminoethyl)-N-(diphenylmethyl)-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EYL 
_cell.length_a            170.423 
_cell.length_b            170.423 
_cell.length_c            170.423 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EYL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        214 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 60 A CYS 300 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc2 A SG CYS 63 A CYS 303 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc3 A NE2 HIS 80 A HIS 320 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 A SG CYS 87 A CYS 327 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc5 B SG CYS 60 B CYS 300 1_555 E ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc6 B SG CYS 63 B CYS 303 1_555 E ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc7 B NE2 HIS 80 B HIS 320 1_555 E ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc8 B SG CYS 87 B CYS 327 1_555 E ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
#
_chem_comp.formula           'C29 H39 N5 O3' 
_chem_comp.formula_weight    505.652 
_chem_comp.id                SMK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S,6S,7R,9aS)-6-{[(2S)-2-aminobutanoyl]amino}-7-(2-aminoethyl)-N-(diphenylmethyl)-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CB SMK sing 290 n n 
CB CA SMK sing 291 n n 
CA N SMK sing 292 n n 
CA C SMK sing 293 n n 
C O SMK doub 294 n n 
C NAY SMK sing 295 n n 
NAY CBI SMK sing 296 n n 
CBI CBB SMK sing 297 n n 
CBI CBF SMK sing 298 n n 
CBB OAF SMK doub 299 n n 
CBB NBK SMK sing 300 n n 
NBK CBG SMK sing 301 n n 
NBK CBJ SMK sing 302 n n 
CBF CAS SMK sing 303 n n 
CBF CAT SMK sing 304 n n 
CAS CAQ SMK sing 305 n n 
CAQ NAB SMK sing 306 n n 
CAT CAU SMK sing 307 n n 
CAU CBG SMK sing 308 n n 
CBG CAV SMK sing 309 n n 
CAV CAW SMK sing 310 n n 
CAW CBJ SMK sing 311 n n 
CBJ CBA SMK sing 312 n n 
CBA OAE SMK doub 313 n n 
CBA NAX SMK sing 314 n n 
NAX CBH SMK sing 315 n n 
CBH CBC SMK sing 316 n n 
CBH CBD SMK sing 317 n n 
CBC CAM SMK doub 318 n y 
CBC CAN SMK sing 319 n y 
CAM CAI SMK sing 320 n y 
CAI CAG SMK doub 321 n y 
CAG CAJ SMK sing 322 n y 
CAJ CAN SMK doub 323 n y 
CBD CAO SMK doub 324 n y 
CBD CAP SMK sing 325 n y 
CAO CAK SMK sing 326 n y 
CAK CAH SMK doub 327 n y 
CAH CAL SMK sing 328 n y 
CAL CAP SMK doub 329 n y 
CAA HAA SMK sing 330 n n 
CAA HAAA SMK sing 331 n n 
CAA HAAB SMK sing 332 n n 
CB HB SMK sing 333 n n 
CB HBA SMK sing 334 n n 
CA HA SMK sing 335 n n 
N HN SMK sing 336 n n 
N HNA SMK sing 337 n n 
NAY HNAY SMK sing 338 n n 
CBI HBI SMK sing 339 n n 
CBF HBF SMK sing 340 n n 
CAS HAS SMK sing 341 n n 
CAS HASA SMK sing 342 n n 
CAQ HAQ SMK sing 343 n n 
CAQ HAQA SMK sing 344 n n 
NAB HNAB SMK sing 345 n n 
NAB HNAA SMK sing 346 n n 
CAT HAT SMK sing 347 n n 
CAT HATA SMK sing 348 n n 
CAU HAU SMK sing 349 n n 
CAU HAUA SMK sing 350 n n 
CBG HBG SMK sing 351 n n 
CAV HAV SMK sing 352 n n 
CAV HAVA SMK sing 353 n n 
CAW HAW SMK sing 354 n n 
CAW HAWA SMK sing 355 n n 
CBJ HBJ SMK sing 356 n n 
NAX HNAX SMK sing 357 n n 
CBH HBH SMK sing 358 n n 
CAM HAM SMK sing 359 n n 
CAI HAI SMK sing 360 n n 
CAG HAG SMK sing 361 n n 
CAJ HAJ SMK sing 362 n n 
CAN HAN SMK sing 363 n n 
CAO HAO SMK sing 364 n n 
CAK HAK SMK sing 365 n n 
CAH HAH SMK sing 366 n n 
CAL HAL SMK sing 367 n n 
CAP HAP SMK sing 368 n n 
#
_atom_sites.entry_id                     3EYL 
_atom_sites.fract_transf_matrix[1][1]    0.005868 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005868 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 502 502 ZN ZN . 
D 3 SMK A 1 600 600 SMK SMK . 
E 2 ZN B 1 502 502 ZN ZN . 
F 3 SMK B 1 600 600 SMK SMK . 
G 4 HOH A 1 2 2 HOH HOH . 
G 4 HOH A 2 9 9 HOH HOH . 
H 4 HOH B 1 1 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA SMK . . . D 3 29.781 -6.724 7.57 1 38.49 ? CAA SMK 600 A 1 
HETATM 2 C CB SMK . . . D 3 29.36 -5.44 6.868 1 40.65 ? CB SMK 600 A 1 
HETATM 3 C CA SMK . . . D 3 29.473 -4.246 7.816 1 40.96 ? CA SMK 600 A 1 
HETATM 4 N N SMK . . . D 3 28.86 -3.055 7.21 1 40.97 ? N SMK 600 A 1 
HETATM 5 C C SMK . . . D 3 30.947 -3.998 8.095 1 41.67 ? C SMK 600 A 1 
HETATM 6 O O SMK . . . D 3 31.732 -3.709 7.196 1 43.03 ? O SMK 600 A 1 
HETATM 7 N NAY SMK . . . D 3 31.315 -4.129 9.353 1 42.04 ? NAY SMK 600 A 1 
HETATM 8 C CBI SMK . . . D 3 32.727 -3.93 9.693 1 45.46 ? CBI SMK 600 A 1 
HETATM 9 C CBB SMK . . . D 3 33.214 -5.075 10.607 1 42.88 ? CBB SMK 600 A 1 
HETATM 10 O OAF SMK . . . D 3 32.4 -5.901 11.015 1 44.7 ? OAF SMK 600 A 1 
HETATM 11 N NBK SMK . . . D 3 34.489 -5.25 10.943 1 41.76 ? NBK SMK 600 A 1 
HETATM 12 C CBF SMK . . . D 3 33.011 -2.485 10.194 1 49.17 ? CBF SMK 600 A 1 
HETATM 13 C CAS SMK . . . D 3 32.333 -2.119 11.525 1 51.31 ? CAS SMK 600 A 1 
HETATM 14 C CAQ SMK . . . D 3 31.952 -0.63 11.559 1 51.26 ? CAQ SMK 600 A 1 
HETATM 15 N NAB SMK . . . D 3 30.69 -0.417 10.837 1 52.03 ? NAB SMK 600 A 1 
HETATM 16 C CAT SMK . . . D 3 34.529 -2.154 10.207 1 52.07 ? CAT SMK 600 A 1 
HETATM 17 C CAU SMK . . . D 3 35.386 -3.015 11.151 1 47.44 ? CAU SMK 600 A 1 
HETATM 18 C CBG SMK . . . D 3 35.633 -4.408 10.567 1 45.03 ? CBG SMK 600 A 1 
HETATM 19 C CAV SMK . . . D 3 36.853 -5.028 11.243 1 42.15 ? CAV SMK 600 A 1 
HETATM 20 C CAW SMK . . . D 3 36.431 -6.45 11.589 1 41.57 ? CAW SMK 600 A 1 
HETATM 21 C CBJ SMK . . . D 3 34.918 -6.365 11.792 1 42.47 ? CBJ SMK 600 A 1 
HETATM 22 C CBA SMK . . . D 3 34.545 -6.095 13.254 1 42.43 ? CBA SMK 600 A 1 
HETATM 23 O OAE SMK . . . D 3 34.425 -4.952 13.69 1 45.62 ? OAE SMK 600 A 1 
HETATM 24 N NAX SMK . . . D 3 34.357 -7.186 13.983 1 39.21 ? NAX SMK 600 A 1 
HETATM 25 C CBH SMK . . . D 3 33.973 -7.11 15.396 1 37 ? CBH SMK 600 A 1 
HETATM 26 C CBC SMK . . . D 3 35.134 -6.594 16.262 1 37.41 ? CBC SMK 600 A 1 
HETATM 27 C CAM SMK . . . D 3 34.844 -5.82 17.389 1 37.6 ? CAM SMK 600 A 1 
HETATM 28 C CAI SMK . . . D 3 35.871 -5.326 18.194 1 34.22 ? CAI SMK 600 A 1 
HETATM 29 C CAG SMK . . . D 3 37.195 -5.606 17.862 1 34.35 ? CAG SMK 600 A 1 
HETATM 30 C CAJ SMK . . . D 3 37.489 -6.375 16.734 1 35.56 ? CAJ SMK 600 A 1 
HETATM 31 C CAN SMK . . . D 3 36.462 -6.869 15.928 1 37.16 ? CAN SMK 600 A 1 
HETATM 32 C CBD SMK . . . D 3 33.448 -8.48 15.819 1 37.63 ? CBD SMK 600 A 1 
HETATM 33 C CAO SMK . . . D 3 32.36 -9.004 15.12 1 38.8 ? CAO SMK 600 A 1 
HETATM 34 C CAK SMK . . . D 3 31.831 -10.244 15.455 1 38.94 ? CAK SMK 600 A 1 
HETATM 35 C CAH SMK . . . D 3 32.408 -10.958 16.504 1 39.24 ? CAH SMK 600 A 1 
HETATM 36 C CAL SMK . . . D 3 33.495 -10.439 17.208 1 38.95 ? CAL SMK 600 A 1 
HETATM 37 C CAP SMK . . . D 3 34.021 -9.198 16.865 1 38.41 ? CAP SMK 600 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           37 
#