data_3EYS
#
_model_server_result.job_id            0P1vunLtdL_Ldz0SeK8CTg 
_model_server_result.datetime_utc      '2025-03-05 21:03:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eys 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":224}' 
#
_entry.id    3EYS 
#
_exptl.entry_id    3EYS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         96.14 
_cell.angle_beta          93.83 
_cell.angle_gamma         91.73 
_cell.entry_id            3EYS 
_cell.length_a            41.656 
_cell.length_b            42.677 
_cell.length_c            58.63 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EYS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 150 H CYS 150 1_555 B SG CYS 205 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 A C GLU 218 L GLU 218 1_555 A N YCM 219 L YCM 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale2 C C PCA 1 Q PCA 3 1_555 C N PHE 2 Q PHE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3EYS 
_atom_sites.fract_transf_matrix[1][1]    0.024006 
_atom_sites.fract_transf_matrix[1][2]    0.000727 
_atom_sites.fract_transf_matrix[1][3]    0.001698 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023443 
_atom_sites.fract_transf_matrix[2][3]    0.002578 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL H 1 224 1 GOL GOL . 
E 5 HOH L 1 220 1 HOH HOH . 
E 5 HOH L 2 221 2 HOH HOH . 
E 5 HOH L 3 222 3 HOH HOH . 
E 5 HOH L 4 223 4 HOH HOH . 
E 5 HOH L 5 224 5 HOH HOH . 
E 5 HOH L 6 225 7 HOH HOH . 
E 5 HOH L 7 226 8 HOH HOH . 
E 5 HOH L 8 227 11 HOH HOH . 
E 5 HOH L 9 228 13 HOH HOH . 
E 5 HOH L 10 229 15 HOH HOH . 
E 5 HOH L 11 230 16 HOH HOH . 
E 5 HOH L 12 231 17 HOH HOH . 
E 5 HOH L 13 232 18 HOH HOH . 
E 5 HOH L 14 233 19 HOH HOH . 
E 5 HOH L 15 234 21 HOH HOH . 
E 5 HOH L 16 235 24 HOH HOH . 
E 5 HOH L 17 236 25 HOH HOH . 
E 5 HOH L 18 237 26 HOH HOH . 
E 5 HOH L 19 238 27 HOH HOH . 
E 5 HOH L 20 239 30 HOH HOH . 
E 5 HOH L 21 240 32 HOH HOH . 
E 5 HOH L 22 241 34 HOH HOH . 
E 5 HOH L 23 242 36 HOH HOH . 
E 5 HOH L 24 243 37 HOH HOH . 
E 5 HOH L 25 244 38 HOH HOH . 
E 5 HOH L 26 245 42 HOH HOH . 
E 5 HOH L 27 246 44 HOH HOH . 
E 5 HOH L 28 247 48 HOH HOH . 
E 5 HOH L 29 248 50 HOH HOH . 
E 5 HOH L 30 249 51 HOH HOH . 
E 5 HOH L 31 250 52 HOH HOH . 
E 5 HOH L 32 251 53 HOH HOH . 
E 5 HOH L 33 252 57 HOH HOH . 
E 5 HOH L 34 253 58 HOH HOH . 
E 5 HOH L 35 254 59 HOH HOH . 
E 5 HOH L 36 255 62 HOH HOH . 
E 5 HOH L 37 256 63 HOH HOH . 
E 5 HOH L 38 257 66 HOH HOH . 
E 5 HOH L 39 258 67 HOH HOH . 
E 5 HOH L 40 259 70 HOH HOH . 
E 5 HOH L 41 260 71 HOH HOH . 
E 5 HOH L 42 261 72 HOH HOH . 
E 5 HOH L 43 262 73 HOH HOH . 
E 5 HOH L 44 263 75 HOH HOH . 
E 5 HOH L 45 264 77 HOH HOH . 
E 5 HOH L 46 265 79 HOH HOH . 
E 5 HOH L 47 266 81 HOH HOH . 
E 5 HOH L 48 267 83 HOH HOH . 
E 5 HOH L 49 268 85 HOH HOH . 
E 5 HOH L 50 269 86 HOH HOH . 
E 5 HOH L 51 270 90 HOH HOH . 
E 5 HOH L 52 271 91 HOH HOH . 
E 5 HOH L 53 272 98 HOH HOH . 
E 5 HOH L 54 273 102 HOH HOH . 
E 5 HOH L 55 274 103 HOH HOH . 
E 5 HOH L 56 275 105 HOH HOH . 
E 5 HOH L 57 276 107 HOH HOH . 
E 5 HOH L 58 277 108 HOH HOH . 
E 5 HOH L 59 278 109 HOH HOH . 
E 5 HOH L 60 279 113 HOH HOH . 
F 5 HOH H 1 225 6 HOH HOH . 
F 5 HOH H 2 226 9 HOH HOH . 
F 5 HOH H 3 227 10 HOH HOH . 
F 5 HOH H 4 228 12 HOH HOH . 
F 5 HOH H 5 229 14 HOH HOH . 
F 5 HOH H 6 230 20 HOH HOH . 
F 5 HOH H 7 231 22 HOH HOH . 
F 5 HOH H 8 232 23 HOH HOH . 
F 5 HOH H 9 233 28 HOH HOH . 
F 5 HOH H 10 234 29 HOH HOH . 
F 5 HOH H 11 235 31 HOH HOH . 
F 5 HOH H 12 236 33 HOH HOH . 
F 5 HOH H 13 237 35 HOH HOH . 
F 5 HOH H 14 238 39 HOH HOH . 
F 5 HOH H 15 239 40 HOH HOH . 
F 5 HOH H 16 240 41 HOH HOH . 
F 5 HOH H 17 241 43 HOH HOH . 
F 5 HOH H 18 242 45 HOH HOH . 
F 5 HOH H 19 243 46 HOH HOH . 
F 5 HOH H 20 244 47 HOH HOH . 
F 5 HOH H 21 245 49 HOH HOH . 
F 5 HOH H 22 246 54 HOH HOH . 
F 5 HOH H 23 247 55 HOH HOH . 
F 5 HOH H 24 248 56 HOH HOH . 
F 5 HOH H 25 249 60 HOH HOH . 
F 5 HOH H 26 250 61 HOH HOH . 
F 5 HOH H 27 251 64 HOH HOH . 
F 5 HOH H 28 252 65 HOH HOH . 
F 5 HOH H 29 253 68 HOH HOH . 
F 5 HOH H 30 254 69 HOH HOH . 
F 5 HOH H 31 255 74 HOH HOH . 
F 5 HOH H 32 256 76 HOH HOH . 
F 5 HOH H 33 257 78 HOH HOH . 
F 5 HOH H 34 258 80 HOH HOH . 
F 5 HOH H 35 259 82 HOH HOH . 
F 5 HOH H 36 260 84 HOH HOH . 
F 5 HOH H 37 261 87 HOH HOH . 
F 5 HOH H 38 262 88 HOH HOH . 
F 5 HOH H 39 263 89 HOH HOH . 
F 5 HOH H 40 264 92 HOH HOH . 
F 5 HOH H 41 265 93 HOH HOH . 
F 5 HOH H 42 266 94 HOH HOH . 
F 5 HOH H 43 267 95 HOH HOH . 
F 5 HOH H 44 268 96 HOH HOH . 
F 5 HOH H 45 269 97 HOH HOH . 
F 5 HOH H 46 270 99 HOH HOH . 
F 5 HOH H 47 271 100 HOH HOH . 
F 5 HOH H 48 272 101 HOH HOH . 
F 5 HOH H 49 273 104 HOH HOH . 
F 5 HOH H 50 274 106 HOH HOH . 
F 5 HOH H 51 275 110 HOH HOH . 
F 5 HOH H 52 276 111 HOH HOH . 
F 5 HOH H 53 277 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 24.051 -21.871 -5.344 1 41.53 ? C1 GOL 224 H 1 
HETATM 2 O O1 GOL . . . D 4 24.016 -21.92 -3.926 1 41.24 ? O1 GOL 224 H 1 
HETATM 3 C C2 GOL . . . D 4 22.708 -22.281 -5.964 1 40.84 ? C2 GOL 224 H 1 
HETATM 4 O O2 GOL . . . D 4 21.833 -22.832 -5.011 1 39.5 ? O2 GOL 224 H 1 
HETATM 5 C C3 GOL . . . D 4 22.9 -23.236 -7.145 1 41.48 ? C3 GOL 224 H 1 
HETATM 6 O O3 GOL . . . D 4 22.218 -24.487 -7.014 1 40 ? O3 GOL 224 H 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#