data_3EYW # _model_server_result.job_id rzn-8xRwZxFI96ukML0alw _model_server_result.datetime_utc '2025-03-09 02:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2400}' # _entry.id 3EYW # _exptl.entry_id 3EYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EYW _cell.length_a 64.47 _cell.length_b 85.015 _cell.length_c 188.702 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3EYW _atom_sites.fract_transf_matrix[1][1] 0.015511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 2400 2400 FMN FMN . D 3 NAD A 1 2401 2401 NAD NAD . E 4 MG A 1 2403 2403 MG MG . F 5 ZN A 1 2402 2402 ZN ZN . G 5 ZN B 1 2402 2402 ZN ZN . H 2 FMN B 1 2400 2400 FMN FMN . I 3 NAD B 1 2401 2401 NAD NAD . J 6 HOH A 1 5 5 HOH HOH . J 6 HOH A 2 9 9 HOH HOH . J 6 HOH A 3 13 13 HOH HOH . J 6 HOH A 4 14 14 HOH HOH . J 6 HOH A 5 15 15 HOH HOH . J 6 HOH A 6 16 16 HOH HOH . J 6 HOH A 7 18 18 HOH HOH . J 6 HOH A 8 23 23 HOH HOH . J 6 HOH A 9 24 24 HOH HOH . J 6 HOH A 10 27 27 HOH HOH . J 6 HOH A 11 28 28 HOH HOH . J 6 HOH A 12 31 31 HOH HOH . J 6 HOH A 13 36 36 HOH HOH . J 6 HOH A 14 38 38 HOH HOH . J 6 HOH A 15 42 42 HOH HOH . J 6 HOH A 16 44 44 HOH HOH . J 6 HOH A 17 45 45 HOH HOH . J 6 HOH A 18 51 51 HOH HOH . J 6 HOH A 19 52 52 HOH HOH . J 6 HOH A 20 53 53 HOH HOH . J 6 HOH A 21 54 54 HOH HOH . J 6 HOH A 22 55 55 HOH HOH . J 6 HOH A 23 56 56 HOH HOH . J 6 HOH A 24 57 57 HOH HOH . J 6 HOH A 25 58 58 HOH HOH . J 6 HOH A 26 62 62 HOH HOH . J 6 HOH A 27 63 63 HOH HOH . J 6 HOH A 28 65 65 HOH HOH . J 6 HOH A 29 68 68 HOH HOH . J 6 HOH A 30 69 69 HOH HOH . J 6 HOH A 31 72 72 HOH HOH . J 6 HOH A 32 73 73 HOH HOH . J 6 HOH A 33 74 74 HOH HOH . J 6 HOH A 34 78 78 HOH HOH . J 6 HOH A 35 79 79 HOH HOH . J 6 HOH A 36 80 80 HOH HOH . J 6 HOH A 37 81 81 HOH HOH . J 6 HOH A 38 82 82 HOH HOH . J 6 HOH A 39 85 85 HOH HOH . J 6 HOH A 40 87 87 HOH HOH . J 6 HOH A 41 89 89 HOH HOH . J 6 HOH A 42 92 92 HOH HOH . J 6 HOH A 43 93 93 HOH HOH . J 6 HOH A 44 95 95 HOH HOH . J 6 HOH A 45 99 99 HOH HOH . J 6 HOH A 46 101 101 HOH HOH . J 6 HOH A 47 106 106 HOH HOH . J 6 HOH A 48 109 109 HOH HOH . J 6 HOH A 49 111 111 HOH HOH . J 6 HOH A 50 114 114 HOH HOH . J 6 HOH A 51 115 115 HOH HOH . J 6 HOH A 52 123 123 HOH HOH . J 6 HOH A 53 125 125 HOH HOH . J 6 HOH A 54 127 127 HOH HOH . J 6 HOH A 55 133 133 HOH HOH . J 6 HOH A 56 134 134 HOH HOH . J 6 HOH A 57 135 135 HOH HOH . J 6 HOH A 58 137 137 HOH HOH . J 6 HOH A 59 138 138 HOH HOH . J 6 HOH A 60 139 139 HOH HOH . J 6 HOH A 61 140 140 HOH HOH . J 6 HOH A 62 141 141 HOH HOH . J 6 HOH A 63 143 143 HOH HOH . J 6 HOH A 64 144 144 HOH HOH . J 6 HOH A 65 145 145 HOH HOH . J 6 HOH A 66 146 146 HOH HOH . J 6 HOH A 67 149 149 HOH HOH . J 6 HOH A 68 150 150 HOH HOH . J 6 HOH A 69 153 153 HOH HOH . J 6 HOH A 70 155 155 HOH HOH . J 6 HOH A 71 158 158 HOH HOH . J 6 HOH A 72 159 159 HOH HOH . J 6 HOH A 73 160 160 HOH HOH . J 6 HOH A 74 161 161 HOH HOH . J 6 HOH A 75 163 163 HOH HOH . J 6 HOH A 76 165 165 HOH HOH . J 6 HOH A 77 167 167 HOH HOH . J 6 HOH A 78 168 168 HOH HOH . J 6 HOH A 79 169 169 HOH HOH . J 6 HOH A 80 171 171 HOH HOH . J 6 HOH A 81 172 172 HOH HOH . J 6 HOH A 82 176 176 HOH HOH . J 6 HOH A 83 179 179 HOH HOH . J 6 HOH A 84 180 180 HOH HOH . J 6 HOH A 85 181 181 HOH HOH . J 6 HOH A 86 183 183 HOH HOH . J 6 HOH A 87 184 184 HOH HOH . J 6 HOH A 88 186 186 HOH HOH . J 6 HOH A 89 187 187 HOH HOH . J 6 HOH A 90 190 190 HOH HOH . K 6 HOH B 1 6 6 HOH HOH . K 6 HOH B 2 7 7 HOH HOH . K 6 HOH B 3 10 10 HOH HOH . K 6 HOH B 4 11 11 HOH HOH . K 6 HOH B 5 12 12 HOH HOH . K 6 HOH B 6 17 17 HOH HOH . K 6 HOH B 7 19 19 HOH HOH . K 6 HOH B 8 20 20 HOH HOH . K 6 HOH B 9 21 21 HOH HOH . K 6 HOH B 10 22 22 HOH HOH . K 6 HOH B 11 25 25 HOH HOH . K 6 HOH B 12 26 26 HOH HOH . K 6 HOH B 13 29 29 HOH HOH . K 6 HOH B 14 30 30 HOH HOH . K 6 HOH B 15 32 32 HOH HOH . K 6 HOH B 16 33 33 HOH HOH . K 6 HOH B 17 34 34 HOH HOH . K 6 HOH B 18 35 35 HOH HOH . K 6 HOH B 19 37 37 HOH HOH . K 6 HOH B 20 39 39 HOH HOH . K 6 HOH B 21 40 40 HOH HOH . K 6 HOH B 22 41 41 HOH HOH . K 6 HOH B 23 43 43 HOH HOH . K 6 HOH B 24 46 46 HOH HOH . K 6 HOH B 25 47 47 HOH HOH . K 6 HOH B 26 48 48 HOH HOH . K 6 HOH B 27 49 49 HOH HOH . K 6 HOH B 28 50 50 HOH HOH . K 6 HOH B 29 59 59 HOH HOH . K 6 HOH B 30 60 60 HOH HOH . K 6 HOH B 31 61 61 HOH HOH . K 6 HOH B 32 64 64 HOH HOH . K 6 HOH B 33 67 67 HOH HOH . K 6 HOH B 34 70 70 HOH HOH . K 6 HOH B 35 75 75 HOH HOH . K 6 HOH B 36 76 76 HOH HOH . K 6 HOH B 37 77 77 HOH HOH . K 6 HOH B 38 83 83 HOH HOH . K 6 HOH B 39 84 84 HOH HOH . K 6 HOH B 40 86 86 HOH HOH . K 6 HOH B 41 88 88 HOH HOH . K 6 HOH B 42 90 90 HOH HOH . K 6 HOH B 43 94 94 HOH HOH . K 6 HOH B 44 96 96 HOH HOH . K 6 HOH B 45 97 97 HOH HOH . K 6 HOH B 46 98 98 HOH HOH . K 6 HOH B 47 100 100 HOH HOH . K 6 HOH B 48 102 102 HOH HOH . K 6 HOH B 49 103 103 HOH HOH . K 6 HOH B 50 104 104 HOH HOH . K 6 HOH B 51 105 105 HOH HOH . K 6 HOH B 52 107 107 HOH HOH . K 6 HOH B 53 108 108 HOH HOH . K 6 HOH B 54 110 110 HOH HOH . K 6 HOH B 55 112 112 HOH HOH . K 6 HOH B 56 113 113 HOH HOH . K 6 HOH B 57 116 116 HOH HOH . K 6 HOH B 58 117 117 HOH HOH . K 6 HOH B 59 120 120 HOH HOH . K 6 HOH B 60 121 121 HOH HOH . K 6 HOH B 61 122 122 HOH HOH . K 6 HOH B 62 124 124 HOH HOH . K 6 HOH B 63 128 128 HOH HOH . K 6 HOH B 64 129 129 HOH HOH . K 6 HOH B 65 130 130 HOH HOH . K 6 HOH B 66 131 131 HOH HOH . K 6 HOH B 67 132 132 HOH HOH . K 6 HOH B 68 136 136 HOH HOH . K 6 HOH B 69 142 142 HOH HOH . K 6 HOH B 70 147 147 HOH HOH . K 6 HOH B 71 148 148 HOH HOH . K 6 HOH B 72 151 151 HOH HOH . K 6 HOH B 73 152 152 HOH HOH . K 6 HOH B 74 154 154 HOH HOH . K 6 HOH B 75 156 156 HOH HOH . K 6 HOH B 76 157 157 HOH HOH . K 6 HOH B 77 162 162 HOH HOH . K 6 HOH B 78 164 164 HOH HOH . K 6 HOH B 79 166 166 HOH HOH . K 6 HOH B 80 170 170 HOH HOH . K 6 HOH B 81 173 173 HOH HOH . K 6 HOH B 82 174 174 HOH HOH . K 6 HOH B 83 175 175 HOH HOH . K 6 HOH B 84 177 177 HOH HOH . K 6 HOH B 85 178 178 HOH HOH . K 6 HOH B 86 182 182 HOH HOH . K 6 HOH B 87 185 185 HOH HOH . K 6 HOH B 88 188 188 HOH HOH . K 6 HOH B 89 189 189 HOH HOH . K 6 HOH B 90 191 191 HOH HOH . K 6 HOH B 91 192 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 2 -37.099 -5.518 -49.559 1 18.55 ? N1 FMN 2400 B 1 HETATM 2 C C2 FMN . . . H 2 -36.651 -6.589 -50.29 1 18.68 ? C2 FMN 2400 B 1 HETATM 3 O O2 FMN . . . H 2 -37.466 -7.303 -50.867 1 20.21 ? O2 FMN 2400 B 1 HETATM 4 N N3 FMN . . . H 2 -35.297 -6.859 -50.378 1 18.73 ? N3 FMN 2400 B 1 HETATM 5 C C4 FMN . . . H 2 -34.373 -6.053 -49.747 1 18.09 ? C4 FMN 2400 B 1 HETATM 6 O O4 FMN . . . H 2 -33.194 -6.394 -49.803 1 17.46 ? O4 FMN 2400 B 1 HETATM 7 C C4A FMN . . . H 2 -34.813 -4.94 -49.003 1 18.43 ? C4A FMN 2400 B 1 HETATM 8 N N5 FMN . . . H 2 -33.935 -4.064 -48.38 1 17.64 ? N5 FMN 2400 B 1 HETATM 9 C C5A FMN . . . H 2 -34.41 -2.98 -47.65 1 18.64 ? C5A FMN 2400 B 1 HETATM 10 C C6 FMN . . . H 2 -33.523 -2.111 -47 1 18.63 ? C6 FMN 2400 B 1 HETATM 11 C C7 FMN . . . H 2 -33.996 -1.02 -46.257 1 19.02 ? C7 FMN 2400 B 1 HETATM 12 C C7M FMN . . . H 2 -33.001 -0.075 -45.628 1 15.38 ? C7M FMN 2400 B 1 HETATM 13 C C8 FMN . . . H 2 -35.391 -0.785 -46.18 1 19.28 ? C8 FMN 2400 B 1 HETATM 14 C C8M FMN . . . H 2 -35.989 0.181 -45.176 1 14.64 ? C8M FMN 2400 B 1 HETATM 15 C C9 FMN . . . H 2 -36.256 -1.655 -46.835 1 16.91 ? C9 FMN 2400 B 1 HETATM 16 C C9A FMN . . . H 2 -35.789 -2.751 -47.555 1 18.51 ? C9A FMN 2400 B 1 HETATM 17 N N10 FMN . . . H 2 -36.676 -3.62 -48.203 1 19.17 ? N10 FMN 2400 B 1 HETATM 18 C C10 FMN . . . H 2 -36.188 -4.692 -48.922 1 18.56 ? C10 FMN 2400 B 1 HETATM 19 C C1' FMN . . . H 2 -38.175 -3.513 -48.051 1 17.11 ? C1' FMN 2400 B 1 HETATM 20 C C2' FMN . . . H 2 -38.644 -4.086 -46.707 1 18.66 ? C2' FMN 2400 B 1 HETATM 21 O O2' FMN . . . H 2 -38.227 -5.423 -46.503 1 16.52 ? O2' FMN 2400 B 1 HETATM 22 C C3' FMN . . . H 2 -40.167 -4.002 -46.653 1 18.18 ? C3' FMN 2400 B 1 HETATM 23 O O3' FMN . . . H 2 -40.557 -2.667 -46.928 1 19.52 ? O3' FMN 2400 B 1 HETATM 24 C C4' FMN . . . H 2 -40.673 -4.418 -45.287 1 18.21 ? C4' FMN 2400 B 1 HETATM 25 O O4' FMN . . . H 2 -40.517 -5.81 -45.134 1 18.75 ? O4' FMN 2400 B 1 HETATM 26 C C5' FMN . . . H 2 -42.146 -4.073 -45.145 1 19.99 ? C5' FMN 2400 B 1 HETATM 27 O O5' FMN . . . H 2 -42.627 -4.57 -43.931 1 21.03 ? O5' FMN 2400 B 1 HETATM 28 P P FMN . . . H 2 -43.22 -3.516 -42.873 1 20.57 ? P FMN 2400 B 1 HETATM 29 O O1P FMN . . . H 2 -43.341 -4.288 -41.598 1 19.52 ? O1P FMN 2400 B 1 HETATM 30 O O2P FMN . . . H 2 -42.348 -2.299 -42.713 1 21.01 ? O2P FMN 2400 B 1 HETATM 31 O O3P FMN . . . H 2 -44.556 -3.069 -43.42 1 22.14 ? O3P FMN 2400 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #