data_3EYY # _model_server_result.job_id gXzf1S9B2hzcEPo6MYojHw _model_server_result.datetime_utc '2024-11-25 19:46:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":152}' # _entry.id 3EYY # _exptl.entry_id 3EYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EYY _cell.length_a 79.164 _cell.length_b 79.164 _cell.length_c 49.732 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 33 A HIS 33 1_555 D ZN ZN . A ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 A NE2 HIS 70 A HIS 70 1_555 C NI NI . A NI 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 A NE2 HIS 72 A HIS 72 1_555 C NI NI . A NI 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 A ND1 HIS 86 A HIS 86 1_555 D ZN ZN . A ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc5 A NE2 HIS 88 A HIS 88 1_555 D ZN ZN . A ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc6 A NE2 HIS 90 A HIS 90 1_555 D ZN ZN . A ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc7 A NE2 HIS 126 A HIS 126 1_555 C NI NI . A NI 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc8 C NI NI . A NI 146 1_555 H O2 EDO . A EDO 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc9 C NI NI . A NI 146 1_555 J O8 MLI . A MLI 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc10 C NI NI . A NI 146 1_555 J O6 MLI . A MLI 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc11 B NE2 HIS 33 B HIS 33 1_555 M ZN ZN . B ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc12 B NE2 HIS 70 B HIS 70 1_555 L NI NI . B NI 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc13 B NE2 HIS 72 B HIS 72 1_555 L NI NI . B NI 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc14 B ND1 HIS 86 B HIS 86 1_555 M ZN ZN . B ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc15 B NE2 HIS 88 B HIS 88 1_555 M ZN ZN . B ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc16 B NE2 HIS 90 B HIS 90 1_555 M ZN ZN . B ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc17 B NE2 HIS 126 B HIS 126 1_555 L NI NI . B NI 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc18 L NI NI . B NI 146 1_555 P O2 EDO . B EDO 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc19 L NI NI . B NI 146 1_555 R O8 MLI . B MLI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc20 L NI NI . B NI 146 1_555 R O6 MLI . B MLI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3EYY _atom_sites.fract_transf_matrix[1][1] 0.012632 _atom_sites.fract_transf_matrix[1][2] 0.007293 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 146 2 NI NI . D 3 ZN A 1 147 4 ZN ZN . E 4 CL A 1 148 5 CL CL . F 4 CL A 1 149 9 CL CL . G 4 CL A 1 150 10 CL CL . H 5 EDO A 1 151 1 EDO EDO . I 5 EDO A 1 152 3 EDO EDO . J 6 MLI A 1 153 3 MLI MLI . K 6 MLI A 1 154 4 MLI MLI . L 2 NI B 1 146 1 NI NI . M 3 ZN B 1 147 3 ZN ZN . N 4 CL B 1 148 8 CL CL . O 4 CL B 1 149 11 CL CL . P 5 EDO B 1 150 2 EDO EDO . Q 5 EDO B 1 151 4 EDO EDO . R 6 MLI B 1 152 1 MLI MLI . S 7 HOH A 1 155 1 HOH HOH . S 7 HOH A 2 156 10 HOH HOH . S 7 HOH A 3 157 11 HOH HOH . S 7 HOH A 4 158 12 HOH HOH . S 7 HOH A 5 159 13 HOH HOH . S 7 HOH A 6 160 17 HOH HOH . S 7 HOH A 7 161 19 HOH HOH . S 7 HOH A 8 162 20 HOH HOH . S 7 HOH A 9 163 21 HOH HOH . S 7 HOH A 10 164 22 HOH HOH . S 7 HOH A 11 165 25 HOH HOH . S 7 HOH A 12 166 26 HOH HOH . S 7 HOH A 13 167 27 HOH HOH . S 7 HOH A 14 168 28 HOH HOH . S 7 HOH A 15 169 48 HOH HOH . S 7 HOH A 16 170 54 HOH HOH . S 7 HOH A 17 171 55 HOH HOH . S 7 HOH A 18 172 58 HOH HOH . S 7 HOH A 19 173 61 HOH HOH . S 7 HOH A 20 174 62 HOH HOH . S 7 HOH A 21 175 63 HOH HOH . S 7 HOH A 22 176 64 HOH HOH . S 7 HOH A 23 177 66 HOH HOH . S 7 HOH A 24 178 67 HOH HOH . S 7 HOH A 25 179 74 HOH HOH . S 7 HOH A 26 180 75 HOH HOH . S 7 HOH A 27 181 78 HOH HOH . S 7 HOH A 28 182 83 HOH HOH . S 7 HOH A 29 183 86 HOH HOH . S 7 HOH A 30 184 96 HOH HOH . S 7 HOH A 31 185 98 HOH HOH . S 7 HOH A 32 186 99 HOH HOH . S 7 HOH A 33 187 104 HOH HOH . S 7 HOH A 34 188 105 HOH HOH . S 7 HOH A 35 189 106 HOH HOH . S 7 HOH A 36 190 108 HOH HOH . S 7 HOH A 37 191 110 HOH HOH . S 7 HOH A 38 192 111 HOH HOH . S 7 HOH A 39 193 115 HOH HOH . S 7 HOH A 40 194 117 HOH HOH . S 7 HOH A 41 195 119 HOH HOH . T 7 HOH B 1 153 29 HOH HOH . T 7 HOH B 2 154 30 HOH HOH . T 7 HOH B 3 155 37 HOH HOH . T 7 HOH B 4 156 39 HOH HOH . T 7 HOH B 5 157 41 HOH HOH . T 7 HOH B 6 158 42 HOH HOH . T 7 HOH B 7 159 43 HOH HOH . T 7 HOH B 8 160 44 HOH HOH . T 7 HOH B 9 161 46 HOH HOH . T 7 HOH B 10 162 52 HOH HOH . T 7 HOH B 11 163 53 HOH HOH . T 7 HOH B 12 164 68 HOH HOH . T 7 HOH B 13 165 69 HOH HOH . T 7 HOH B 14 166 70 HOH HOH . T 7 HOH B 15 167 71 HOH HOH . T 7 HOH B 16 168 72 HOH HOH . T 7 HOH B 17 169 73 HOH HOH . T 7 HOH B 18 170 76 HOH HOH . T 7 HOH B 19 171 77 HOH HOH . T 7 HOH B 20 172 79 HOH HOH . T 7 HOH B 21 173 80 HOH HOH . T 7 HOH B 22 174 81 HOH HOH . T 7 HOH B 23 175 82 HOH HOH . T 7 HOH B 24 176 84 HOH HOH . T 7 HOH B 25 177 90 HOH HOH . T 7 HOH B 26 178 91 HOH HOH . T 7 HOH B 27 179 93 HOH HOH . T 7 HOH B 28 180 94 HOH HOH . T 7 HOH B 29 181 95 HOH HOH . T 7 HOH B 30 182 97 HOH HOH . T 7 HOH B 31 183 100 HOH HOH . T 7 HOH B 32 184 101 HOH HOH . T 7 HOH B 33 185 102 HOH HOH . T 7 HOH B 34 186 103 HOH HOH . T 7 HOH B 35 187 107 HOH HOH . T 7 HOH B 36 188 109 HOH HOH . T 7 HOH B 37 189 112 HOH HOH . T 7 HOH B 38 190 113 HOH HOH . T 7 HOH B 39 191 114 HOH HOH . T 7 HOH B 40 192 116 HOH HOH . T 7 HOH B 41 193 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 5 7.949 50.836 -4.662 1 67.48 ? C1 EDO 152 A 1 HETATM 2 O O1 EDO . . . I 5 6.675 51.065 -5.265 1 66.02 ? O1 EDO 152 A 1 HETATM 3 C C2 EDO . . . I 5 8.613 52.183 -4.353 1 68.34 ? C2 EDO 152 A 1 HETATM 4 O O2 EDO . . . I 5 9.788 51.974 -3.567 1 66.63 ? O2 EDO 152 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #