data_3EZR # _model_server_result.job_id QIjOtH3mYZKLJHf7NyuPWg _model_server_result.datetime_utc '2025-06-24 19:31:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ezr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3EZR # _exptl.entry_id 3EZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.539 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methoxy-4-{3-[4-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EZR _cell.length_a 53.763 _cell.length_b 72.081 _cell.length_c 72.392 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C26 H27 N7 O' _chem_comp.formula_weight 453.539 _chem_comp.id EZR _chem_comp.mon_nstd_flag . _chem_comp.name 3-methoxy-4-{3-[4-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C7 EZR doub 83 n y C4 C12 EZR sing 84 n y C5 C1 EZR doub 85 n y C5 C14 EZR sing 86 n y C6 C1 EZR sing 87 n y C6 C16 EZR doub 88 n y C7 C17 EZR sing 89 n y C8 C15 EZR doub 90 n y C8 C11 EZR sing 91 n y C10 C15 EZR sing 92 n y C10 C2 EZR doub 93 n y C10 C19 EZR sing 94 n y C13 C14 EZR doub 95 n y C13 C16 EZR sing 96 n y C13 N27 EZR sing 97 n y C15 N30 EZR sing 98 n y C17 C9 EZR doub 99 n y C17 N32 EZR sing 100 n n C20 C19 EZR sing 101 n y C20 N27 EZR doub 102 n y C20 N29 EZR sing 103 n y C21 C23 EZR sing 104 n n C21 N31 EZR sing 105 n n C22 C24 EZR sing 106 n n C22 N31 EZR sing 107 n n C24 N33 EZR sing 108 n n C26 O34 EZR sing 109 n n C2 C3 EZR sing 110 n y C3 C11 EZR doub 111 n y C9 C18 EZR sing 112 n y C11 C12 EZR sing 113 n y C12 C18 EZR doub 114 n y C14 N29 EZR sing 115 n y C16 N31 EZR sing 116 n n C18 O34 EZR sing 117 n n C19 N28 EZR doub 118 n y C23 N33 EZR sing 119 n n C25 N33 EZR sing 120 n n N28 N30 EZR sing 121 n y C4 H4 EZR sing 122 n n C5 H5 EZR sing 123 n n C6 H6 EZR sing 124 n n C7 H7 EZR sing 125 n n C8 H8 EZR sing 126 n n C21 H21 EZR sing 127 n n C21 H21A EZR sing 128 n n C22 H22 EZR sing 129 n n C22 H22A EZR sing 130 n n C24 H24 EZR sing 131 n n C24 H24A EZR sing 132 n n C26 H26 EZR sing 133 n n C26 H26A EZR sing 134 n n C26 H26B EZR sing 135 n n C1 H1 EZR sing 136 n n C2 H2 EZR sing 137 n n C3 H3 EZR sing 138 n n C9 H9 EZR sing 139 n n C23 H23 EZR sing 140 n n C23 H23A EZR sing 141 n n C25 H25 EZR sing 142 n n C25 H25A EZR sing 143 n n C25 H25B EZR sing 144 n n N29 HN29 EZR sing 145 n n N30 HN30 EZR sing 146 n n N32 HN32 EZR sing 147 n n N32 HN3A EZR sing 148 n n # _atom_sites.entry_id 3EZR _atom_sites.fract_transf_matrix[1][1] 0.0186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EZR A 1 300 300 EZR EZR . C 2 EZR A 1 301 301 EZR EZR . D 3 HOH A 1 8000 8000 HOH HOH . D 3 HOH A 2 8001 8001 HOH HOH . D 3 HOH A 3 8002 8002 HOH HOH . D 3 HOH A 4 8003 8003 HOH HOH . D 3 HOH A 5 8004 8004 HOH HOH . D 3 HOH A 6 8005 8005 HOH HOH . D 3 HOH A 7 8006 8006 HOH HOH . D 3 HOH A 8 8007 8007 HOH HOH . D 3 HOH A 9 8008 8008 HOH HOH . D 3 HOH A 10 8009 8009 HOH HOH . D 3 HOH A 11 8010 8010 HOH HOH . D 3 HOH A 12 8011 8011 HOH HOH . D 3 HOH A 13 8012 8012 HOH HOH . D 3 HOH A 14 8013 8013 HOH HOH . D 3 HOH A 15 8014 8014 HOH HOH . D 3 HOH A 16 8015 8015 HOH HOH . D 3 HOH A 17 8016 8016 HOH HOH . D 3 HOH A 18 8017 8017 HOH HOH . D 3 HOH A 19 8018 8018 HOH HOH . D 3 HOH A 20 8019 8019 HOH HOH . D 3 HOH A 21 8020 8020 HOH HOH . D 3 HOH A 22 8021 8021 HOH HOH . D 3 HOH A 23 8022 8022 HOH HOH . D 3 HOH A 24 8023 8023 HOH HOH . D 3 HOH A 25 8024 8024 HOH HOH . D 3 HOH A 26 8025 8025 HOH HOH . D 3 HOH A 27 8026 8026 HOH HOH . D 3 HOH A 28 8027 8027 HOH HOH . D 3 HOH A 29 8028 8028 HOH HOH . D 3 HOH A 30 8029 8029 HOH HOH . D 3 HOH A 31 8030 8030 HOH HOH . D 3 HOH A 32 8031 8031 HOH HOH . D 3 HOH A 33 8032 8032 HOH HOH . D 3 HOH A 34 8033 8033 HOH HOH . D 3 HOH A 35 8034 8034 HOH HOH . D 3 HOH A 36 8035 8035 HOH HOH . D 3 HOH A 37 8036 8036 HOH HOH . D 3 HOH A 38 8037 8037 HOH HOH . D 3 HOH A 39 8038 8038 HOH HOH . D 3 HOH A 40 8039 8039 HOH HOH . D 3 HOH A 41 8040 8040 HOH HOH . D 3 HOH A 42 8041 8041 HOH HOH . D 3 HOH A 43 8042 8042 HOH HOH . D 3 HOH A 44 8043 8043 HOH HOH . D 3 HOH A 45 8044 8044 HOH HOH . D 3 HOH A 46 8045 8045 HOH HOH . D 3 HOH A 47 8046 8046 HOH HOH . D 3 HOH A 48 8047 8047 HOH HOH . D 3 HOH A 49 8048 8048 HOH HOH . D 3 HOH A 50 8049 8049 HOH HOH . D 3 HOH A 51 8050 8050 HOH HOH . D 3 HOH A 52 8051 8051 HOH HOH . D 3 HOH A 53 8052 8052 HOH HOH . D 3 HOH A 54 8053 8053 HOH HOH . D 3 HOH A 55 8054 8054 HOH HOH . D 3 HOH A 56 8055 8055 HOH HOH . D 3 HOH A 57 8056 8056 HOH HOH . D 3 HOH A 58 8057 8057 HOH HOH . D 3 HOH A 59 8058 8058 HOH HOH . D 3 HOH A 60 8059 8059 HOH HOH . D 3 HOH A 61 8060 8060 HOH HOH . D 3 HOH A 62 8061 8061 HOH HOH . D 3 HOH A 63 8062 8062 HOH HOH . D 3 HOH A 64 8063 8063 HOH HOH . D 3 HOH A 65 8064 8064 HOH HOH . D 3 HOH A 66 8065 8065 HOH HOH . D 3 HOH A 67 8066 8066 HOH HOH . D 3 HOH A 68 8067 8067 HOH HOH . D 3 HOH A 69 8068 8068 HOH HOH . D 3 HOH A 70 8069 8069 HOH HOH . D 3 HOH A 71 8070 8070 HOH HOH . D 3 HOH A 72 8071 8071 HOH HOH . D 3 HOH A 73 8072 8072 HOH HOH . D 3 HOH A 74 8073 8073 HOH HOH . D 3 HOH A 75 8074 8074 HOH HOH . D 3 HOH A 76 8075 8075 HOH HOH . D 3 HOH A 77 8076 8076 HOH HOH . D 3 HOH A 78 8077 8077 HOH HOH . D 3 HOH A 79 8078 8078 HOH HOH . D 3 HOH A 80 8079 8079 HOH HOH . D 3 HOH A 81 8080 8080 HOH HOH . D 3 HOH A 82 8081 8081 HOH HOH . D 3 HOH A 83 8082 8082 HOH HOH . D 3 HOH A 84 8083 8083 HOH HOH . D 3 HOH A 85 8084 8084 HOH HOH . D 3 HOH A 86 8085 8085 HOH HOH . D 3 HOH A 87 8086 8086 HOH HOH . D 3 HOH A 88 8087 8087 HOH HOH . D 3 HOH A 89 8088 8088 HOH HOH . D 3 HOH A 90 8089 8089 HOH HOH . D 3 HOH A 91 8090 8090 HOH HOH . D 3 HOH A 92 8091 8091 HOH HOH . D 3 HOH A 93 8092 8092 HOH HOH . D 3 HOH A 94 8093 8093 HOH HOH . D 3 HOH A 95 8094 8094 HOH HOH . D 3 HOH A 96 8095 8095 HOH HOH . D 3 HOH A 97 8096 8096 HOH HOH . D 3 HOH A 98 8097 8097 HOH HOH . D 3 HOH A 99 8098 8098 HOH HOH . D 3 HOH A 100 8099 8099 HOH HOH . D 3 HOH A 101 8100 8100 HOH HOH . D 3 HOH A 102 8101 8101 HOH HOH . D 3 HOH A 103 8102 8102 HOH HOH . D 3 HOH A 104 8103 8103 HOH HOH . D 3 HOH A 105 8104 8104 HOH HOH . D 3 HOH A 106 8105 8105 HOH HOH . D 3 HOH A 107 8106 8106 HOH HOH . D 3 HOH A 108 8107 8107 HOH HOH . D 3 HOH A 109 8108 8108 HOH HOH . D 3 HOH A 110 8109 8109 HOH HOH . D 3 HOH A 111 8110 8110 HOH HOH . D 3 HOH A 112 8111 8111 HOH HOH . D 3 HOH A 113 8112 8112 HOH HOH . D 3 HOH A 114 8113 8113 HOH HOH . D 3 HOH A 115 8114 8114 HOH HOH . D 3 HOH A 116 8115 8115 HOH HOH . D 3 HOH A 117 8116 8116 HOH HOH . D 3 HOH A 118 8117 8117 HOH HOH . D 3 HOH A 119 8118 8118 HOH HOH . D 3 HOH A 120 8119 8119 HOH HOH . D 3 HOH A 121 8120 8120 HOH HOH . D 3 HOH A 122 8121 8121 HOH HOH . D 3 HOH A 123 8122 8122 HOH HOH . D 3 HOH A 124 8123 8123 HOH HOH . D 3 HOH A 125 8124 8124 HOH HOH . D 3 HOH A 126 8125 8125 HOH HOH . D 3 HOH A 127 8126 8126 HOH HOH . D 3 HOH A 128 8127 8127 HOH HOH . D 3 HOH A 129 8128 8128 HOH HOH . D 3 HOH A 130 8129 8129 HOH HOH . D 3 HOH A 131 8130 8130 HOH HOH . D 3 HOH A 132 8131 8131 HOH HOH . D 3 HOH A 133 8132 8132 HOH HOH . D 3 HOH A 134 8133 8133 HOH HOH . D 3 HOH A 135 8134 8134 HOH HOH . D 3 HOH A 136 8135 8135 HOH HOH . D 3 HOH A 137 8136 8136 HOH HOH . D 3 HOH A 138 8137 8137 HOH HOH . D 3 HOH A 139 8138 8138 HOH HOH . D 3 HOH A 140 8139 8139 HOH HOH . D 3 HOH A 141 8140 8140 HOH HOH . D 3 HOH A 142 8141 8141 HOH HOH . D 3 HOH A 143 8142 8142 HOH HOH . D 3 HOH A 144 8143 8143 HOH HOH . D 3 HOH A 145 8144 8144 HOH HOH . D 3 HOH A 146 8145 8145 HOH HOH . D 3 HOH A 147 8146 8146 HOH HOH . D 3 HOH A 148 8147 8147 HOH HOH . D 3 HOH A 149 8148 8148 HOH HOH . D 3 HOH A 150 8149 8149 HOH HOH . D 3 HOH A 151 8150 8150 HOH HOH . D 3 HOH A 152 8151 8151 HOH HOH . D 3 HOH A 153 8152 8152 HOH HOH . D 3 HOH A 154 8153 8153 HOH HOH . D 3 HOH A 155 8154 8154 HOH HOH . D 3 HOH A 156 8155 8155 HOH HOH . D 3 HOH A 157 8156 8156 HOH HOH . D 3 HOH A 158 8157 8157 HOH HOH . D 3 HOH A 159 8158 8158 HOH HOH . D 3 HOH A 160 8159 8159 HOH HOH . D 3 HOH A 161 8160 8160 HOH HOH . D 3 HOH A 162 8161 8161 HOH HOH . D 3 HOH A 163 8162 8162 HOH HOH . D 3 HOH A 164 8163 8163 HOH HOH . D 3 HOH A 165 8164 8164 HOH HOH . D 3 HOH A 166 8165 8165 HOH HOH . D 3 HOH A 167 8166 8166 HOH HOH . D 3 HOH A 168 8167 8167 HOH HOH . D 3 HOH A 169 8168 8168 HOH HOH . D 3 HOH A 170 8169 8169 HOH HOH . D 3 HOH A 171 8170 8170 HOH HOH . D 3 HOH A 172 8171 8171 HOH HOH . D 3 HOH A 173 8172 8172 HOH HOH . D 3 HOH A 174 8173 8173 HOH HOH . D 3 HOH A 175 8174 8174 HOH HOH . D 3 HOH A 176 8175 8175 HOH HOH . D 3 HOH A 177 8176 8176 HOH HOH . D 3 HOH A 178 8177 8177 HOH HOH . D 3 HOH A 179 8178 8178 HOH HOH . D 3 HOH A 180 8179 8179 HOH HOH . D 3 HOH A 181 8180 8180 HOH HOH . D 3 HOH A 182 8181 8181 HOH HOH . D 3 HOH A 183 8182 8182 HOH HOH . D 3 HOH A 184 8183 8183 HOH HOH . D 3 HOH A 185 8184 8184 HOH HOH . D 3 HOH A 186 8185 8185 HOH HOH . D 3 HOH A 187 8186 8186 HOH HOH . D 3 HOH A 188 8187 8187 HOH HOH . D 3 HOH A 189 8188 8188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EZR . . . C 2 1.569 46.386 -1.74 1 40.97 ? C4 EZR 301 A 1 HETATM 2 C C5 EZR . . . C 2 -9.241 45.145 -3.174 1 53.1 ? C5 EZR 301 A 1 HETATM 3 C C6 EZR . . . C 2 -9.182 45.418 -5.564 1 52.79 ? C6 EZR 301 A 1 HETATM 4 C C7 EZR . . . C 2 2.917 46.132 -1.673 1 40.49 ? C7 EZR 301 A 1 HETATM 5 C C8 EZR . . . C 2 -1.269 46.267 -1.132 1 45.72 ? C8 EZR 301 A 1 HETATM 6 C C10 EZR . . . C 2 -3.406 46.194 -2.289 1 47.22 ? C10 EZR 301 A 1 HETATM 7 C C13 EZR . . . C 2 -7.274 46.007 -4.347 1 52.44 ? C13 EZR 301 A 1 HETATM 8 C C15 EZR . . . C 2 -2.625 46.489 -1.193 1 47.68 ? C15 EZR 301 A 1 HETATM 9 C C17 EZR . . . C 2 3.419 44.92 -2.093 1 40.64 ? C17 EZR 301 A 1 HETATM 10 C C20 EZR . . . C 2 -5.911 46.316 -2.727 1 51.08 ? C20 EZR 301 A 1 HETATM 11 C C21 EZR . . . C 2 -6.021 45.556 -7.033 1 52.96 ? C21 EZR 301 A 1 HETATM 12 C C22 EZR . . . C 2 -8.175 46.228 -7.924 1 52.35 ? C22 EZR 301 A 1 HETATM 13 C C24 EZR . . . C 2 -7.528 46.945 -9.095 1 53.06 ? C24 EZR 301 A 1 HETATM 14 C C26 EZR . . . C 2 1.004 42.102 -3.592 1 39.55 ? C26 EZR 301 A 1 HETATM 15 C C1 EZR . . . C 2 -9.84 45.052 -4.412 1 52.38 ? C1 EZR 301 A 1 HETATM 16 C C2 EZR . . . C 2 -2.842 45.658 -3.431 1 46.99 ? C2 EZR 301 A 1 HETATM 17 C C3 EZR . . . C 2 -1.482 45.446 -3.381 1 46.31 ? C3 EZR 301 A 1 HETATM 18 C C9 EZR . . . C 2 2.566 43.96 -2.59 1 39.74 ? C9 EZR 301 A 1 HETATM 19 C C11 EZR . . . C 2 -0.71 45.729 -2.27 1 46.12 ? C11 EZR 301 A 1 HETATM 20 C C12 EZR . . . C 2 0.706 45.44 -2.245 1 42.46 ? C12 EZR 301 A 1 HETATM 21 C C14 EZR . . . C 2 -7.952 45.625 -3.206 1 52.7 ? C14 EZR 301 A 1 HETATM 22 C C16 EZR . . . C 2 -7.888 45.9 -5.587 1 52.25 ? C16 EZR 301 A 1 HETATM 23 C C18 EZR . . . C 2 1.21 44.224 -2.67 1 41.56 ? C18 EZR 301 A 1 HETATM 24 C C19 EZR . . . C 2 -4.718 46.559 -1.903 1 48.66 ? C19 EZR 301 A 1 HETATM 25 C C23 EZR . . . C 2 -5.27 46.33 -8.098 1 53.5 ? C23 EZR 301 A 1 HETATM 26 C C25 EZR . . . C 2 -6.034 45.268 -10.209 1 55.86 ? C25 EZR 301 A 1 HETATM 27 N N27 EZR . . . C 2 -6.004 46.422 -4.03 1 51.1 ? N27 EZR 301 A 1 HETATM 28 N N28 EZR . . . C 2 -4.765 47.039 -0.656 1 48.56 ? N28 EZR 301 A 1 HETATM 29 N N29 EZR . . . C 2 -7.07 45.842 -2.192 1 52.35 ? N29 EZR 301 A 1 HETATM 30 N N30 EZR . . . C 2 -3.48 47.006 -0.259 1 47.82 ? N30 EZR 301 A 1 HETATM 31 N N31 EZR . . . C 2 -7.265 46.264 -6.799 1 52.43 ? N31 EZR 301 A 1 HETATM 32 N N32 EZR . . . C 2 4.802 44.682 -2.018 1 40.62 ? N32 EZR 301 A 1 HETATM 33 N N33 EZR . . . C 2 -6.134 46.445 -9.307 1 53.9 ? N33 EZR 301 A 1 HETATM 34 O O34 EZR . . . C 2 0.317 43.277 -3.17 1 41.2 ? O34 EZR 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 59 _model_server_stats.element_count 34 #