data_3EZT # _model_server_result.job_id 2sCcycSk0mxEpr1bRr4XqA _model_server_result.datetime_utc '2024-11-24 14:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ezt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 3EZT # _exptl.entry_id 3EZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.388 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.06 _cell.angle_gamma 90 _cell.entry_id 3EZT _cell.length_a 53.524 _cell.length_b 84.664 _cell.length_c 94.723 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 A ASP 176 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 A OD1 ASP 176 A ASP 176 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.212 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.243 ? metalc ? metalc12 A O TYR 225 A TYR 225 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.121 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc14 M O HOH . A HOH 391 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc15 M O HOH . A HOH 394 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc16 C ZN ZN . A ZN 402 1_555 F O2 B3N . A B3N 500 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.244 ? metalc ? metalc17 C ZN ZN . A ZN 402 1_555 F O2 B3N . A B3N 500 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.206 ? metalc ? metalc18 C ZN ZN . A ZN 402 1_555 F O4 B3N . A B3N 500 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.311 ? metalc ? metalc19 C ZN ZN . A ZN 402 1_555 F O4 B3N . A B3N 500 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.283 ? metalc ? metalc20 B O ASP 176 B ASP 176 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc21 B OD1 ASP 176 B ASP 176 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc22 B OD2 ASP 178 B ASP 178 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc23 B O ASP 178 B ASP 178 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc24 B ND1 HIS 180 B HIS 180 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc25 B O HIS 180 B HIS 180 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc26 B O PHE 189 B PHE 189 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc27 B O THR 192 B THR 192 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc28 B O VAL 195 B VAL 195 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc29 B OG SER 199 B SER 199 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? metalc ? metalc30 B O LEU 200 B LEU 200 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc31 B O TYR 225 B TYR 225 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc32 B OG SER 226 B SER 226 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.383 ? metalc ? metalc33 B OD2 ASP 267 B ASP 267 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc34 H ZN ZN . B ZN 401 1_555 K O2 B3N . B B3N 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.298 ? metalc ? metalc35 H ZN ZN . B ZN 401 1_555 K O2 B3N . B B3N 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.36 ? metalc ? metalc36 H ZN ZN . B ZN 401 1_555 K O4 B3N . B B3N 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.285 ? metalc ? metalc37 H ZN ZN . B ZN 401 1_555 K O4 B3N . B B3N 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'C16 H25 N3 O3' _chem_comp.formula_weight 307.388 _chem_comp.id B3N _chem_comp.mon_nstd_flag . _chem_comp.name 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms M344 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C13 B3N doub 70 n n C13 C14 B3N sing 71 n n C13 N12 B3N sing 72 n n C14 C15 B3N doub 73 n y C14 C19 B3N sing 74 n y C15 C16 B3N sing 75 n y C15 H15 B3N sing 76 n n C16 C17 B3N doub 77 n y C16 H16 B3N sing 78 n n C17 N20 B3N sing 79 n n C17 C18 B3N sing 80 n y N20 C22 B3N sing 81 n n N20 C21 B3N sing 82 n n C22 H221 B3N sing 83 n n C22 H222 B3N sing 84 n n C22 H223 B3N sing 85 n n C21 H211 B3N sing 86 n n C21 H212 B3N sing 87 n n C21 H213 B3N sing 88 n n C18 C19 B3N doub 89 n y C18 H18 B3N sing 90 n n C19 H19 B3N sing 91 n n N12 C10 B3N sing 92 n n N12 H12 B3N sing 93 n n C10 C9 B3N sing 94 n n C10 H101 B3N sing 95 n n C10 H102 B3N sing 96 n n C9 C8 B3N sing 97 n n C9 H91 B3N sing 98 n n C9 H92 B3N sing 99 n n C8 C7 B3N sing 100 n n C8 H81 B3N sing 101 n n C8 H82 B3N sing 102 n n C7 C6 B3N sing 103 n n C7 H71 B3N sing 104 n n C7 H72 B3N sing 105 n n C6 C5 B3N sing 106 n n C6 H61 B3N sing 107 n n C6 H62 B3N sing 108 n n C5 C1 B3N sing 109 n n C5 H51 B3N sing 110 n n C5 H52 B3N sing 111 n n C1 O2 B3N doub 112 n n C1 N3 B3N sing 113 n n N3 O4 B3N sing 114 n n N3 H24 B3N sing 115 n n O4 H25 B3N sing 116 n n # _atom_sites.entry_id 3EZT _atom_sites.fract_transf_matrix[1][1] 0.018683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002646 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 402 402 ZN ZN . D 3 K A 1 403 403 K K . E 3 K A 1 404 404 K K . F 4 B3N A 1 500 500 B3N B3N . G 5 BME A 1 601 601 BME BME . H 2 ZN B 1 401 401 ZN ZN . I 3 K B 1 405 405 K K . J 3 K B 1 406 406 K K . K 4 B3N B 1 501 501 B3N B3N . L 5 BME B 1 600 600 BME BME . M 6 HOH A 1 389 389 HOH HOH . M 6 HOH A 2 390 390 HOH HOH . M 6 HOH A 3 391 391 HOH HOH . M 6 HOH A 4 392 392 HOH HOH . M 6 HOH A 5 393 393 HOH HOH . M 6 HOH A 6 394 394 HOH HOH . M 6 HOH A 7 395 395 HOH HOH . M 6 HOH A 8 396 396 HOH HOH . M 6 HOH A 9 397 397 HOH HOH . N 6 HOH B 1 389 389 HOH HOH . N 6 HOH B 2 390 390 HOH HOH . N 6 HOH B 3 391 391 HOH HOH . N 6 HOH B 4 392 392 HOH HOH . N 6 HOH B 5 393 393 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 B3N . A . K 4 1.208 15.158 18.274 0.5 69.81 ? O23 B3N 501 B 1 HETATM 2 O O23 B3N . B . K 4 3.773 16.013 20.328 0.5 62.77 ? O23 B3N 501 B 1 HETATM 3 C C13 B3N . A . K 4 1.901 15.37 19.287 0.5 70.84 ? C13 B3N 501 B 1 HETATM 4 C C13 B3N . B . K 4 2.636 15.634 19.978 0.5 64.75 ? C13 B3N 501 B 1 HETATM 5 C C14 B3N . A . K 4 1.324 15.034 20.658 0.5 71.34 ? C14 B3N 501 B 1 HETATM 6 C C14 B3N . B . K 4 1.661 15.164 21.056 0.5 65.6 ? C14 B3N 501 B 1 HETATM 7 C C15 B3N . A . K 4 2.099 15.268 21.862 0.5 71.77 ? C15 B3N 501 B 1 HETATM 8 C C15 B3N . B . K 4 0.309 14.718 20.737 0.5 66.78 ? C15 B3N 501 B 1 HETATM 9 C C16 B3N . A . K 4 1.56 14.961 23.17 0.5 72.39 ? C16 B3N 501 B 1 HETATM 10 C C16 B3N . B . K 4 -0.606 14.291 21.796 0.5 67.55 ? C16 B3N 501 B 1 HETATM 11 C C17 B3N . A . K 4 0.218 14.407 23.336 0.5 73 ? C17 B3N 501 B 1 HETATM 12 C C17 B3N . B . K 4 -0.191 14.297 23.206 0.5 68.5 ? C17 B3N 501 B 1 HETATM 13 N N20 B3N . A . K 4 -0.341 14.099 24.656 0.5 73.76 ? N20 B3N 501 B 1 HETATM 14 N N20 B3N . B . K 4 -1.064 13.891 24.313 0.5 70.12 ? N20 B3N 501 B 1 HETATM 15 C C22 B3N . A . K 4 -1.705 13.545 24.808 0.5 74.8 ? C22 B3N 501 B 1 HETATM 16 C C22 B3N . B . K 4 -0.574 13.926 25.702 0.5 70.01 ? C22 B3N 501 B 1 HETATM 17 C C21 B3N . A . K 4 0.393 14.317 25.911 0.5 73.11 ? C21 B3N 501 B 1 HETATM 18 C C21 B3N . B . K 4 -2.459 13.434 24.149 0.5 70.3 ? C21 B3N 501 B 1 HETATM 19 C C18 B3N . A . K 4 -0.596 14.16 22.043 0.5 72.36 ? C18 B3N 501 B 1 HETATM 20 C C18 B3N . B . K 4 1.243 14.765 23.501 0.5 67.53 ? C18 B3N 501 B 1 HETATM 21 C C19 B3N . A . K 4 -0.02 14.479 20.763 0.5 72.14 ? C19 B3N 501 B 1 HETATM 22 C C19 B3N . B . K 4 2.102 15.176 22.437 0.5 66.46 ? C19 B3N 501 B 1 HETATM 23 N N12 B3N . A . K 4 3.153 15.897 19.213 0.5 69.87 ? N12 B3N 501 B 1 HETATM 24 N N12 B3N . B . K 4 2.255 15.642 18.679 0.5 63.81 ? N12 B3N 501 B 1 HETATM 25 C C10 B3N . A . K 4 3.867 16.292 17.992 0.5 68.06 ? C10 B3N 501 B 1 HETATM 26 C C10 B3N . B . K 4 3.08 16.085 17.543 0.5 61.46 ? C10 B3N 501 B 1 HETATM 27 C C9 B3N . A . K 4 3.328 17.575 17.336 0.5 66.73 ? C9 B3N 501 B 1 HETATM 28 C C9 B3N . B . K 4 2.764 17.529 17.109 0.5 59.47 ? C9 B3N 501 B 1 HETATM 29 C C8 B3N . A . K 4 3.633 18.782 18.211 0.5 65.14 ? C8 B3N 501 B 1 HETATM 30 C C8 B3N . B . K 4 3.352 18.578 18.066 0.5 57.13 ? C8 B3N 501 B 1 HETATM 31 C C7 B3N . A . K 4 3.118 20.069 17.596 0.5 64.16 ? C7 B3N 501 B 1 HETATM 32 C C7 B3N . B . K 4 2.969 19.97 17.585 0.5 55.89 ? C7 B3N 501 B 1 HETATM 33 C C6 B3N . A . K 4 3.422 21.261 18.463 0.5 62.03 ? C6 B3N 501 B 1 HETATM 34 C C6 B3N . B . K 4 3.473 21.115 18.432 0.5 53 ? C6 B3N 501 B 1 HETATM 35 C C5 B3N . A . K 4 2.9 22.537 17.828 0.5 60.64 ? C5 B3N 501 B 1 HETATM 36 C C5 B3N . B . K 4 2.969 22.419 17.816 0.5 51.32 ? C5 B3N 501 B 1 HETATM 37 C C1 B3N . A . K 4 3.858 23.663 18.125 0.5 59.14 ? C1 B3N 501 B 1 HETATM 38 C C1 B3N . B . K 4 3.874 23.583 18.147 0.5 49.56 ? C1 B3N 501 B 1 HETATM 39 O O2 B3N . A . K 4 3.94 24.176 19.242 0.5 55.73 ? O2 B3N 501 B 1 HETATM 40 O O2 B3N . B . K 4 3.904 24.098 19.266 0.5 45.02 ? O2 B3N 501 B 1 HETATM 41 N N3 B3N . A . K 4 4.615 24.049 17.098 0.5 59.8 ? N3 B3N 501 B 1 HETATM 42 N N3 B3N . B . K 4 4.636 24.005 17.137 0.5 50.38 ? N3 B3N 501 B 1 HETATM 43 O O4 B3N . A . K 4 5.451 24.948 17.183 0.5 59.72 ? O4 B3N 501 B 1 HETATM 44 O O4 B3N . B . K 4 5.431 24.94 17.237 0.5 50.39 ? O4 B3N 501 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #