data_3EZT # _model_server_result.job_id kAxvsYC062kFQ9_mB56emg _model_server_result.datetime_utc '2024-11-07 17:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ezt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 3EZT # _exptl.entry_id 3EZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.06 _cell.angle_gamma 90 _cell.entry_id 3EZT _cell.length_a 53.524 _cell.length_b 84.664 _cell.length_c 94.723 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 A ASP 176 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 A OD1 ASP 176 A ASP 176 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.212 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.243 ? metalc ? metalc12 A O TYR 225 A TYR 225 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.121 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc14 M O HOH . A HOH 391 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc15 M O HOH . A HOH 394 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc16 C ZN ZN . A ZN 402 1_555 F O2 B3N . A B3N 500 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.244 ? metalc ? metalc17 C ZN ZN . A ZN 402 1_555 F O2 B3N . A B3N 500 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.206 ? metalc ? metalc18 C ZN ZN . A ZN 402 1_555 F O4 B3N . A B3N 500 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.311 ? metalc ? metalc19 C ZN ZN . A ZN 402 1_555 F O4 B3N . A B3N 500 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.283 ? metalc ? metalc20 B O ASP 176 B ASP 176 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc21 B OD1 ASP 176 B ASP 176 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc22 B OD2 ASP 178 B ASP 178 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc23 B O ASP 178 B ASP 178 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc24 B ND1 HIS 180 B HIS 180 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc25 B O HIS 180 B HIS 180 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc26 B O PHE 189 B PHE 189 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc27 B O THR 192 B THR 192 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc28 B O VAL 195 B VAL 195 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc29 B OG SER 199 B SER 199 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? metalc ? metalc30 B O LEU 200 B LEU 200 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc31 B O TYR 225 B TYR 225 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc32 B OG SER 226 B SER 226 1_555 J K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.383 ? metalc ? metalc33 B OD2 ASP 267 B ASP 267 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc34 H ZN ZN . B ZN 401 1_555 K O2 B3N . B B3N 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.298 ? metalc ? metalc35 H ZN ZN . B ZN 401 1_555 K O2 B3N . B B3N 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.36 ? metalc ? metalc36 H ZN ZN . B ZN 401 1_555 K O4 B3N . B B3N 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.285 ? metalc ? metalc37 H ZN ZN . B ZN 401 1_555 K O4 B3N . B B3N 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 117 n n C1 O1 BME sing 118 n n C1 H11 BME sing 119 n n C1 H12 BME sing 120 n n C2 S2 BME sing 121 n n C2 H21 BME sing 122 n n C2 H22 BME sing 123 n n O1 HO1 BME sing 124 n n S2 HS2 BME sing 125 n n # _atom_sites.entry_id 3EZT _atom_sites.fract_transf_matrix[1][1] 0.018683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002646 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 402 402 ZN ZN . D 3 K A 1 403 403 K K . E 3 K A 1 404 404 K K . F 4 B3N A 1 500 500 B3N B3N . G 5 BME A 1 601 601 BME BME . H 2 ZN B 1 401 401 ZN ZN . I 3 K B 1 405 405 K K . J 3 K B 1 406 406 K K . K 4 B3N B 1 501 501 B3N B3N . L 5 BME B 1 600 600 BME BME . M 6 HOH A 1 389 389 HOH HOH . M 6 HOH A 2 390 390 HOH HOH . M 6 HOH A 3 391 391 HOH HOH . M 6 HOH A 4 392 392 HOH HOH . M 6 HOH A 5 393 393 HOH HOH . M 6 HOH A 6 394 394 HOH HOH . M 6 HOH A 7 395 395 HOH HOH . M 6 HOH A 8 396 396 HOH HOH . M 6 HOH A 9 397 397 HOH HOH . N 6 HOH B 1 389 389 HOH HOH . N 6 HOH B 2 390 390 HOH HOH . N 6 HOH B 3 391 391 HOH HOH . N 6 HOH B 4 392 392 HOH HOH . N 6 HOH B 5 393 393 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . A . G 5 -3.888 8.435 28.709 0.6 75.98 ? C1 BME 601 A 1 HETATM 2 C C2 BME . A . G 5 -2.77 8.824 29.687 0.6 75.98 ? C2 BME 601 A 1 HETATM 3 O O1 BME . A . G 5 -3.347 7.719 27.595 0.6 74.57 ? O1 BME 601 A 1 HETATM 4 S S2 BME . A . G 5 -1.973 7.336 30.36 0.6 76.28 ? S2 BME 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #