data_3EZV # _model_server_result.job_id qFeo0PcjdWMkDFgcsNfxww _model_server_result.datetime_utc '2024-12-26 22:25:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ezv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3EZV # _exptl.entry_id 3EZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 423.513 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{3-[7-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EZV _cell.length_a 53.602 _cell.length_b 71.747 _cell.length_c 71.922 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H25 N7' _chem_comp.formula_weight 423.513 _chem_comp.id EZV _chem_comp.mon_nstd_flag . _chem_comp.name 4-{3-[7-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EZV doub 83 n y C1 C6 EZV sing 84 n y C2 C3 EZV sing 85 n y C2 C19 EZV sing 86 n y C3 C4 EZV doub 87 n y C4 C5 EZV sing 88 n y C4 N7 EZV sing 89 n y C5 C6 EZV doub 90 n y C5 C9 EZV sing 91 n y N7 N8 EZV sing 92 n y N8 C9 EZV doub 93 n y C9 C10 EZV sing 94 n y C10 N11 EZV doub 95 n y C10 N14 EZV sing 96 n y N11 C12 EZV sing 97 n y C12 C13 EZV doub 98 n y C12 C15 EZV sing 99 n y C13 N14 EZV sing 100 n y C13 C18 EZV sing 101 n y C15 C16 EZV doub 102 n y C16 C17 EZV sing 103 n y C17 C18 EZV doub 104 n y C18 N20 EZV sing 105 n n C19 C27 EZV doub 106 n y C19 C31 EZV sing 107 n y N20 C21 EZV sing 108 n n N20 C25 EZV sing 109 n n C21 C22 EZV sing 110 n n C22 N23 EZV sing 111 n n N23 C24 EZV sing 112 n n N23 C26 EZV sing 113 n n C24 C25 EZV sing 114 n n C27 C28 EZV sing 115 n y C28 C29 EZV doub 116 n y C29 C30 EZV sing 117 n y C29 N32 EZV sing 118 n n C30 C31 EZV doub 119 n y C1 H1 EZV sing 120 n n C3 H3 EZV sing 121 n n C6 H6 EZV sing 122 n n N7 HN7 EZV sing 123 n n N14 HN14 EZV sing 124 n n C15 H15 EZV sing 125 n n C16 H16 EZV sing 126 n n C17 H17 EZV sing 127 n n C21 H21 EZV sing 128 n n C21 H21A EZV sing 129 n n C22 H22 EZV sing 130 n n C22 H22A EZV sing 131 n n C24 H24 EZV sing 132 n n C24 H24A EZV sing 133 n n C25 H25 EZV sing 134 n n C25 H25A EZV sing 135 n n C26 H26 EZV sing 136 n n C26 H26A EZV sing 137 n n C26 H26B EZV sing 138 n n C27 H27 EZV sing 139 n n C28 H28 EZV sing 140 n n C30 H30 EZV sing 141 n n C31 H31 EZV sing 142 n n N32 HN32 EZV sing 143 n n N32 HN3A EZV sing 144 n n # _atom_sites.entry_id 3EZV _atom_sites.fract_transf_matrix[1][1] 0.018656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EZV A 1 300 5 EZV EZV . C 3 HOH A 1 801 801 HOH HOH . C 3 HOH A 2 802 802 HOH HOH . C 3 HOH A 3 803 803 HOH HOH . C 3 HOH A 4 804 804 HOH HOH . C 3 HOH A 5 805 805 HOH HOH . C 3 HOH A 6 806 806 HOH HOH . C 3 HOH A 7 807 807 HOH HOH . C 3 HOH A 8 808 808 HOH HOH . C 3 HOH A 9 809 809 HOH HOH . C 3 HOH A 10 810 810 HOH HOH . C 3 HOH A 11 811 811 HOH HOH . C 3 HOH A 12 812 812 HOH HOH . C 3 HOH A 13 813 813 HOH HOH . C 3 HOH A 14 814 814 HOH HOH . C 3 HOH A 15 815 815 HOH HOH . C 3 HOH A 16 816 816 HOH HOH . C 3 HOH A 17 817 817 HOH HOH . C 3 HOH A 18 818 818 HOH HOH . C 3 HOH A 19 819 819 HOH HOH . C 3 HOH A 20 820 820 HOH HOH . C 3 HOH A 21 821 821 HOH HOH . C 3 HOH A 22 822 822 HOH HOH . C 3 HOH A 23 823 823 HOH HOH . C 3 HOH A 24 824 824 HOH HOH . C 3 HOH A 25 825 825 HOH HOH . C 3 HOH A 26 826 826 HOH HOH . C 3 HOH A 27 827 827 HOH HOH . C 3 HOH A 28 828 828 HOH HOH . C 3 HOH A 29 829 829 HOH HOH . C 3 HOH A 30 830 830 HOH HOH . C 3 HOH A 31 831 831 HOH HOH . C 3 HOH A 32 832 832 HOH HOH . C 3 HOH A 33 833 833 HOH HOH . C 3 HOH A 34 834 834 HOH HOH . C 3 HOH A 35 835 835 HOH HOH . C 3 HOH A 36 836 836 HOH HOH . C 3 HOH A 37 837 837 HOH HOH . C 3 HOH A 38 838 838 HOH HOH . C 3 HOH A 39 839 839 HOH HOH . C 3 HOH A 40 840 840 HOH HOH . C 3 HOH A 41 841 841 HOH HOH . C 3 HOH A 42 842 842 HOH HOH . C 3 HOH A 43 843 843 HOH HOH . C 3 HOH A 44 844 844 HOH HOH . C 3 HOH A 45 845 845 HOH HOH . C 3 HOH A 46 846 846 HOH HOH . C 3 HOH A 47 847 847 HOH HOH . C 3 HOH A 48 848 848 HOH HOH . C 3 HOH A 49 849 849 HOH HOH . C 3 HOH A 50 850 850 HOH HOH . C 3 HOH A 51 851 851 HOH HOH . C 3 HOH A 52 852 852 HOH HOH . C 3 HOH A 53 853 853 HOH HOH . C 3 HOH A 54 854 854 HOH HOH . C 3 HOH A 55 855 855 HOH HOH . C 3 HOH A 56 856 856 HOH HOH . C 3 HOH A 57 857 857 HOH HOH . C 3 HOH A 58 858 858 HOH HOH . C 3 HOH A 59 859 859 HOH HOH . C 3 HOH A 60 860 860 HOH HOH . C 3 HOH A 61 861 861 HOH HOH . C 3 HOH A 62 862 862 HOH HOH . C 3 HOH A 63 863 863 HOH HOH . C 3 HOH A 64 864 864 HOH HOH . C 3 HOH A 65 865 865 HOH HOH . C 3 HOH A 66 866 866 HOH HOH . C 3 HOH A 67 867 867 HOH HOH . C 3 HOH A 68 868 868 HOH HOH . C 3 HOH A 69 869 869 HOH HOH . C 3 HOH A 70 870 870 HOH HOH . C 3 HOH A 71 871 871 HOH HOH . C 3 HOH A 72 872 872 HOH HOH . C 3 HOH A 73 873 873 HOH HOH . C 3 HOH A 74 874 874 HOH HOH . C 3 HOH A 75 875 875 HOH HOH . C 3 HOH A 76 876 876 HOH HOH . C 3 HOH A 77 877 877 HOH HOH . C 3 HOH A 78 878 878 HOH HOH . C 3 HOH A 79 879 879 HOH HOH . C 3 HOH A 80 880 880 HOH HOH . C 3 HOH A 81 881 881 HOH HOH . C 3 HOH A 82 882 882 HOH HOH . C 3 HOH A 83 883 883 HOH HOH . C 3 HOH A 84 884 884 HOH HOH . C 3 HOH A 85 885 885 HOH HOH . C 3 HOH A 86 886 886 HOH HOH . C 3 HOH A 87 887 887 HOH HOH . C 3 HOH A 88 888 888 HOH HOH . C 3 HOH A 89 889 889 HOH HOH . C 3 HOH A 90 890 890 HOH HOH . C 3 HOH A 91 891 891 HOH HOH . C 3 HOH A 92 892 892 HOH HOH . C 3 HOH A 93 893 893 HOH HOH . C 3 HOH A 94 894 894 HOH HOH . C 3 HOH A 95 895 895 HOH HOH . C 3 HOH A 96 896 896 HOH HOH . C 3 HOH A 97 897 897 HOH HOH . C 3 HOH A 98 898 898 HOH HOH . C 3 HOH A 99 899 899 HOH HOH . C 3 HOH A 100 900 900 HOH HOH . C 3 HOH A 101 901 901 HOH HOH . C 3 HOH A 102 902 902 HOH HOH . C 3 HOH A 103 903 903 HOH HOH . C 3 HOH A 104 904 904 HOH HOH . C 3 HOH A 105 905 905 HOH HOH . C 3 HOH A 106 906 906 HOH HOH . C 3 HOH A 107 907 907 HOH HOH . C 3 HOH A 108 908 908 HOH HOH . C 3 HOH A 109 909 909 HOH HOH . C 3 HOH A 110 910 910 HOH HOH . C 3 HOH A 111 911 911 HOH HOH . C 3 HOH A 112 912 912 HOH HOH . C 3 HOH A 113 913 913 HOH HOH . C 3 HOH A 114 914 914 HOH HOH . C 3 HOH A 115 915 915 HOH HOH . C 3 HOH A 116 916 916 HOH HOH . C 3 HOH A 117 917 917 HOH HOH . C 3 HOH A 118 918 918 HOH HOH . C 3 HOH A 119 919 919 HOH HOH . C 3 HOH A 120 920 920 HOH HOH . C 3 HOH A 121 921 921 HOH HOH . C 3 HOH A 122 922 922 HOH HOH . C 3 HOH A 123 923 923 HOH HOH . C 3 HOH A 124 924 924 HOH HOH . C 3 HOH A 125 925 925 HOH HOH . C 3 HOH A 126 926 926 HOH HOH . C 3 HOH A 127 927 927 HOH HOH . C 3 HOH A 128 928 928 HOH HOH . C 3 HOH A 129 929 929 HOH HOH . C 3 HOH A 130 930 930 HOH HOH . C 3 HOH A 131 931 931 HOH HOH . C 3 HOH A 132 932 932 HOH HOH . C 3 HOH A 133 933 933 HOH HOH . C 3 HOH A 134 934 934 HOH HOH . C 3 HOH A 135 935 935 HOH HOH . C 3 HOH A 136 936 936 HOH HOH . C 3 HOH A 137 937 937 HOH HOH . C 3 HOH A 138 938 938 HOH HOH . C 3 HOH A 139 939 939 HOH HOH . C 3 HOH A 140 940 940 HOH HOH . C 3 HOH A 141 941 941 HOH HOH . C 3 HOH A 142 942 942 HOH HOH . C 3 HOH A 143 943 943 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EZV . . . B 2 -1.357 30.141 10.037 1 48.32 ? C1 EZV 300 A 1 HETATM 2 C C2 EZV . . . B 2 -1.895 31.403 9.982 1 49.68 ? C2 EZV 300 A 1 HETATM 3 C C3 EZV . . . B 2 -1.361 32.368 9.16 1 47.34 ? C3 EZV 300 A 1 HETATM 4 C C4 EZV . . . B 2 -0.281 31.971 8.414 1 46 ? C4 EZV 300 A 1 HETATM 5 C C5 EZV . . . B 2 0.286 30.715 8.47 1 47.04 ? C5 EZV 300 A 1 HETATM 6 C C6 EZV . . . B 2 -0.26 29.755 9.302 1 47.29 ? C6 EZV 300 A 1 HETATM 7 N N7 EZV . . . B 2 0.47 32.676 7.521 1 44.65 ? N7 EZV 300 A 1 HETATM 8 N N8 EZV . . . B 2 1.484 31.977 6.99 1 45.89 ? N8 EZV 300 A 1 HETATM 9 C C9 EZV . . . B 2 1.376 30.773 7.567 1 46.7 ? C9 EZV 300 A 1 HETATM 10 C C10 EZV . . . B 2 2.343 29.688 7.296 1 47.94 ? C10 EZV 300 A 1 HETATM 11 N N11 EZV . . . B 2 3.351 29.799 6.467 1 49.03 ? N11 EZV 300 A 1 HETATM 12 C C12 EZV . . . B 2 4.004 28.597 6.506 1 49.89 ? C12 EZV 300 A 1 HETATM 13 C C13 EZV . . . B 2 3.382 27.738 7.383 1 50.1 ? C13 EZV 300 A 1 HETATM 14 N N14 EZV . . . B 2 2.332 28.452 7.875 1 49.08 ? N14 EZV 300 A 1 HETATM 15 C C15 EZV . . . B 2 5.129 28.194 5.811 1 50.48 ? C15 EZV 300 A 1 HETATM 16 C C16 EZV . . . B 2 5.559 26.912 6.056 1 50.76 ? C16 EZV 300 A 1 HETATM 17 C C17 EZV . . . B 2 4.919 26.074 6.937 1 50.69 ? C17 EZV 300 A 1 HETATM 18 C C18 EZV . . . B 2 3.801 26.455 7.638 1 50.74 ? C18 EZV 300 A 1 HETATM 19 C C19 EZV . . . B 2 -2.975 31.761 10.859 1 52.01 ? C19 EZV 300 A 1 HETATM 20 N N20 EZV . . . B 2 3.144 25.605 8.53 1 51.37 ? N20 EZV 300 A 1 HETATM 21 C C21 EZV . . . B 2 2.918 26.33 9.755 1 52.67 ? C21 EZV 300 A 1 HETATM 22 C C22 EZV . . . B 2 2.022 25.464 10.606 1 52.88 ? C22 EZV 300 A 1 HETATM 23 N N23 EZV . . . B 2 2.738 24.182 10.844 1 53.28 ? N23 EZV 300 A 1 HETATM 24 C C24 EZV . . . B 2 3.118 23.46 9.602 1 53.23 ? C24 EZV 300 A 1 HETATM 25 C C25 EZV . . . B 2 3.912 24.396 8.721 1 52.81 ? C25 EZV 300 A 1 HETATM 26 C C26 EZV . . . B 2 1.971 23.308 11.76 1 52.56 ? C26 EZV 300 A 1 HETATM 27 C C27 EZV . . . B 2 -3.978 30.894 11.223 1 53.64 ? C27 EZV 300 A 1 HETATM 28 C C28 EZV . . . B 2 -4.949 31.294 12.113 1 54.39 ? C28 EZV 300 A 1 HETATM 29 C C29 EZV . . . B 2 -4.936 32.562 12.65 1 55.34 ? C29 EZV 300 A 1 HETATM 30 C C30 EZV . . . B 2 -3.934 33.432 12.283 1 54.94 ? C30 EZV 300 A 1 HETATM 31 C C31 EZV . . . B 2 -2.962 33.024 11.402 1 52.95 ? C31 EZV 300 A 1 HETATM 32 N N32 EZV . . . B 2 -5.922 32.976 13.565 1 56.64 ? N32 EZV 300 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #