data_3F06 # _model_server_result.job_id n2-YKBnVT2kSxsLDsqhhjg _model_server_result.datetime_utc '2024-11-23 19:31:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 3F06 # _exptl.entry_id 3F06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.388 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.68 _cell.angle_gamma 90 _cell.entry_id 3F06 _cell.length_a 55.989 _cell.length_b 85.875 _cell.length_c 94.834 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 A ASP 176 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc2 A OD1 ASP 176 A ASP 176 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 C ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 C ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 E K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 E K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 E K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc12 A O TYR 225 A TYR 225 1_555 E K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc14 C ZN ZN . A ZN 404 1_555 F O2 B3N . A B3N 500 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.949 ? metalc ? metalc15 C ZN ZN . A ZN 404 1_555 F O2 B3N . A B3N 500 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.955 ? metalc ? metalc16 C ZN ZN . A ZN 404 1_555 F O4 B3N . A B3N 500 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.125 ? metalc ? metalc17 C ZN ZN . A ZN 404 1_555 F O4 B3N . A B3N 500 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.144 ? metalc ? metalc18 B O ASP 176 B ASP 176 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc19 B OD1 ASP 176 B ASP 176 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc20 B OD2 ASP 178 B ASP 178 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc21 B O ASP 178 B ASP 178 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc22 B ND1 HIS 180 B HIS 180 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc23 B O HIS 180 B HIS 180 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc24 B O PHE 189 B PHE 189 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc25 B O THR 192 B THR 192 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc26 B O VAL 195 B VAL 195 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc27 B OG SER 199 B SER 199 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc28 B O LEU 200 B LEU 200 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc29 B O TYR 225 B TYR 225 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc30 B OD2 ASP 267 B ASP 267 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc31 N O HOH . B HOH 395 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc32 H ZN ZN . B ZN 401 1_555 K O2 B3N . B B3N 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.105 ? metalc ? metalc33 H ZN ZN . B ZN 401 1_555 K O2 B3N . B B3N 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.993 ? metalc ? metalc34 H ZN ZN . B ZN 401 1_555 K O4 B3N . B B3N 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.941 ? metalc ? metalc35 H ZN ZN . B ZN 401 1_555 K O4 B3N . B B3N 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.017 ? metalc ? metalc36 H ZN ZN . B ZN 401 1_555 K N3 B3N . B B3N 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.631 ? metalc ? metalc37 H ZN ZN . B ZN 401 1_555 K N3 B3N . B B3N 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.632 ? # _chem_comp.formula 'C16 H25 N3 O3' _chem_comp.formula_weight 307.388 _chem_comp.id B3N _chem_comp.mon_nstd_flag . _chem_comp.name 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms M344 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C13 B3N doub 70 n n C13 C14 B3N sing 71 n n C13 N12 B3N sing 72 n n C14 C15 B3N doub 73 n y C14 C19 B3N sing 74 n y C15 C16 B3N sing 75 n y C15 H15 B3N sing 76 n n C16 C17 B3N doub 77 n y C16 H16 B3N sing 78 n n C17 N20 B3N sing 79 n n C17 C18 B3N sing 80 n y N20 C22 B3N sing 81 n n N20 C21 B3N sing 82 n n C22 H221 B3N sing 83 n n C22 H222 B3N sing 84 n n C22 H223 B3N sing 85 n n C21 H211 B3N sing 86 n n C21 H212 B3N sing 87 n n C21 H213 B3N sing 88 n n C18 C19 B3N doub 89 n y C18 H18 B3N sing 90 n n C19 H19 B3N sing 91 n n N12 C10 B3N sing 92 n n N12 H12 B3N sing 93 n n C10 C9 B3N sing 94 n n C10 H101 B3N sing 95 n n C10 H102 B3N sing 96 n n C9 C8 B3N sing 97 n n C9 H91 B3N sing 98 n n C9 H92 B3N sing 99 n n C8 C7 B3N sing 100 n n C8 H81 B3N sing 101 n n C8 H82 B3N sing 102 n n C7 C6 B3N sing 103 n n C7 H71 B3N sing 104 n n C7 H72 B3N sing 105 n n C6 C5 B3N sing 106 n n C6 H61 B3N sing 107 n n C6 H62 B3N sing 108 n n C5 C1 B3N sing 109 n n C5 H51 B3N sing 110 n n C5 H52 B3N sing 111 n n C1 O2 B3N doub 112 n n C1 N3 B3N sing 113 n n N3 O4 B3N sing 114 n n N3 H24 B3N sing 115 n n O4 H25 B3N sing 116 n n # _atom_sites.entry_id 3F06 _atom_sites.fract_transf_matrix[1][1] 0.017861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001149 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 404 404 ZN ZN . D 3 K A 1 405 405 K K . E 3 K A 1 406 406 K K . F 4 B3N A 1 500 500 B3N B3N . G 5 BME A 1 601 601 BME BME . H 2 ZN B 1 401 401 ZN ZN . I 3 K B 1 402 402 K K . J 3 K B 1 403 403 K K . K 4 B3N B 1 501 501 B3N B3N . L 5 BME B 1 600 600 BME BME . M 6 HOH A 1 389 1 HOH HOH . M 6 HOH A 2 390 3 HOH HOH . M 6 HOH A 3 391 6 HOH HOH . M 6 HOH A 4 392 9 HOH HOH . M 6 HOH A 5 393 11 HOH HOH . M 6 HOH A 6 394 12 HOH HOH . M 6 HOH A 7 395 13 HOH HOH . M 6 HOH A 8 396 17 HOH HOH . M 6 HOH A 9 397 20 HOH HOH . M 6 HOH A 10 398 22 HOH HOH . M 6 HOH A 11 399 23 HOH HOH . M 6 HOH A 12 400 24 HOH HOH . M 6 HOH A 13 401 26 HOH HOH . M 6 HOH A 14 402 28 HOH HOH . M 6 HOH A 15 403 30 HOH HOH . M 6 HOH A 16 407 21 HOH HOH . N 6 HOH B 1 389 2 HOH HOH . N 6 HOH B 2 390 4 HOH HOH . N 6 HOH B 3 391 5 HOH HOH . N 6 HOH B 4 392 7 HOH HOH . N 6 HOH B 5 393 8 HOH HOH . N 6 HOH B 6 394 10 HOH HOH . N 6 HOH B 7 395 14 HOH HOH . N 6 HOH B 8 396 15 HOH HOH . N 6 HOH B 9 397 16 HOH HOH . N 6 HOH B 10 398 18 HOH HOH . N 6 HOH B 11 399 19 HOH HOH . N 6 HOH B 12 404 25 HOH HOH . N 6 HOH B 13 405 27 HOH HOH . N 6 HOH B 14 406 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 B3N . A . F 4 22.453 -18.7 29.602 0.7 68.88 ? O23 B3N 500 A 1 HETATM 2 O O23 B3N . B . F 4 19.255 -16.906 27.496 0.3 72.15 ? O23 B3N 500 A 1 HETATM 3 C C13 B3N . A . F 4 21.851 -18.047 28.737 0.7 68.42 ? C13 B3N 500 A 1 HETATM 4 C C13 B3N . B . F 4 20.387 -17.322 27.769 0.3 73.11 ? C13 B3N 500 A 1 HETATM 5 C C14 B3N . A . F 4 22.207 -18.244 27.277 0.7 68.02 ? C14 B3N 500 A 1 HETATM 6 C C14 B3N . B . F 4 21.235 -17.91 26.655 0.3 73.43 ? C14 B3N 500 A 1 HETATM 7 C C15 B3N . A . F 4 21.529 -17.509 26.249 0.7 69.64 ? C15 B3N 500 A 1 HETATM 8 C C15 B3N . B . F 4 22.556 -18.404 26.911 0.3 73.21 ? C15 B3N 500 A 1 HETATM 9 C C16 B3N . A . F 4 21.851 -17.693 24.862 0.7 70.59 ? C16 B3N 500 A 1 HETATM 10 C C16 B3N . B . F 4 23.352 -18.957 25.855 0.3 74.05 ? C16 B3N 500 A 1 HETATM 11 C C17 B3N . A . F 4 22.866 -18.622 24.455 0.7 71.36 ? C17 B3N 500 A 1 HETATM 12 C C17 B3N . B . F 4 22.853 -19.038 24.509 0.3 74.52 ? C17 B3N 500 A 1 HETATM 13 N N20 B3N . A . F 4 23.221 -18.848 23.076 0.7 72.93 ? N20 B3N 500 A 1 HETATM 14 N N20 B3N . B . F 4 23.613 -19.583 23.422 0.3 75.51 ? N20 B3N 500 A 1 HETATM 15 C C22 B3N . A . F 4 24.267 -19.81 22.711 0.7 74.7 ? C22 B3N 500 A 1 HETATM 16 C C22 B3N . B . F 4 23.041 -19.637 22.071 0.3 75.25 ? C22 B3N 500 A 1 HETATM 17 C C21 B3N . A . F 4 22.586 -18.165 21.974 0.7 71.84 ? C21 B3N 500 A 1 HETATM 18 C C21 B3N . B . F 4 24.971 -20.107 23.584 0.3 75.72 ? C21 B3N 500 A 1 HETATM 19 C C18 B3N . A . F 4 23.585 -19.394 25.569 0.7 70.2 ? C18 B3N 500 A 1 HETATM 20 C C18 B3N . B . F 4 21.436 -18.504 24.254 0.3 74.13 ? C18 B3N 500 A 1 HETATM 21 C C19 B3N . A . F 4 23.223 -19.172 26.922 0.7 68.95 ? C19 B3N 500 A 1 HETATM 22 C C19 B3N . B . F 4 20.694 -17.968 25.329 0.3 73.73 ? C19 B3N 500 A 1 HETATM 23 N N12 B3N . A . F 4 20.887 -17.161 29.041 0.7 68.47 ? N12 B3N 500 A 1 HETATM 24 N N12 B3N . B . F 4 20.884 -17.268 29.017 0.3 73.13 ? N12 B3N 500 A 1 HETATM 25 C C10 B3N . A . F 4 20.402 -16.818 30.373 0.7 67.51 ? C10 B3N 500 A 1 HETATM 26 C C10 B3N . B . F 4 20.196 -16.735 30.19 0.3 72.89 ? C10 B3N 500 A 1 HETATM 27 C C9 B3N . A . F 4 20.721 -15.366 30.778 0.7 66.02 ? C9 B3N 500 A 1 HETATM 28 C C9 B3N . B . F 4 20.72 -15.366 30.639 0.3 72.51 ? C9 B3N 500 A 1 HETATM 29 C C8 B3N . A . F 4 20.35 -14.382 29.658 0.7 64.57 ? C8 B3N 500 A 1 HETATM 30 C C8 B3N . B . F 4 20.306 -14.285 29.641 0.3 72.05 ? C8 B3N 500 A 1 HETATM 31 C C7 B3N . A . F 4 20.889 -12.984 29.937 0.7 63.2 ? C7 B3N 500 A 1 HETATM 32 C C7 B3N . B . F 4 20.836 -12.914 30.023 0.3 71.67 ? C7 B3N 500 A 1 HETATM 33 C C6 B3N . A . F 4 20.046 -11.889 29.327 0.7 62.91 ? C6 B3N 500 A 1 HETATM 34 C C6 B3N . B . F 4 20.15 -11.807 29.258 0.3 71.73 ? C6 B3N 500 A 1 HETATM 35 C C5 B3N . A . F 4 20.643 -10.525 29.639 0.7 64.55 ? C5 B3N 500 A 1 HETATM 36 C C5 B3N . B . F 4 20.701 -10.45 29.661 0.3 72.46 ? C5 B3N 500 A 1 HETATM 37 C C1 B3N . A . F 4 19.61 -9.447 29.409 0.7 64.23 ? C1 B3N 500 A 1 HETATM 38 C C1 B3N . B . F 4 19.641 -9.398 29.428 0.3 72.39 ? C1 B3N 500 A 1 HETATM 39 O O2 B3N . A . F 4 19.248 -9.132 28.282 0.7 65.89 ? O2 B3N 500 A 1 HETATM 40 O O2 B3N . B . F 4 19.284 -9.082 28.299 0.3 73.05 ? O2 B3N 500 A 1 HETATM 41 N N3 B3N . A . F 4 19.108 -8.862 30.488 0.7 63.57 ? N3 B3N 500 A 1 HETATM 42 N N3 B3N . B . F 4 19.115 -8.835 30.507 0.3 72.19 ? N3 B3N 500 A 1 HETATM 43 O O4 B3N . A . F 4 18.253 -7.977 30.388 0.7 62.32 ? O4 B3N 500 A 1 HETATM 44 O O4 B3N . B . F 4 18.241 -7.97 30.412 0.3 71.78 ? O4 B3N 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #