data_3F07 # _model_server_result.job_id vtk9aT7nL2jOeCirk6_G5g _model_server_result.datetime_utc '2024-11-28 17:20:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 3F07 # _exptl.entry_id 3F07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.31 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-N-hydroxy-3-[1-methyl-4-(phenylacetyl)-1H-pyrrol-2-yl]prop-2-enamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.74 _cell.angle_gamma 90 _cell.entry_id 3F07 _cell.length_a 88.381 _cell.length_b 90.171 _cell.length_c 92.267 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,P 1 1 B,I,J,K,L,Q 2 1 C,M,N,O,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 78 1_555 G ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 A ND1 HIS 90 A HIS 90 1_555 G ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 A O ASP 176 A ASP 176 1_555 E K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc4 A OD2 ASP 178 A ASP 178 1_555 D ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc5 A O ASP 178 A ASP 178 1_555 E K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc6 A ND1 HIS 180 A HIS 180 1_555 D ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 A O HIS 180 A HIS 180 1_555 E K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc8 A O VAL 195 A VAL 195 1_555 F K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc9 A O LEU 200 A LEU 200 1_555 E K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc10 A O TYR 225 A TYR 225 1_555 F K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc11 A OD2 ASP 267 A ASP 267 1_555 D ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc12 B O ASP 176 B ASP 176 1_555 J K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc13 B OD2 ASP 178 B ASP 178 1_555 I ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc14 B O ASP 178 B ASP 178 1_555 J K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc15 B ND1 HIS 180 B HIS 180 1_555 I ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc16 B O HIS 180 B HIS 180 1_555 J K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc17 B O VAL 195 B VAL 195 1_555 K K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc18 B O LEU 200 B LEU 200 1_555 J K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc19 B O TYR 225 B TYR 225 1_555 K K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc20 B OD2 ASP 267 B ASP 267 1_555 I ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc21 C O ASP 176 C ASP 176 1_555 N K K . C K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc22 C OD2 ASP 178 C ASP 178 1_555 M ZN ZN . C ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc23 C O ASP 178 C ASP 178 1_555 N K K . C K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc24 C ND1 HIS 180 C HIS 180 1_555 M ZN ZN . C ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc25 C O HIS 180 C HIS 180 1_555 N K K . C K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc26 C O PHE 189 C PHE 189 1_555 O K K . C K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc27 C O VAL 195 C VAL 195 1_555 O K K . C K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc28 C O LEU 200 C LEU 200 1_555 N K K . C K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc29 C O TYR 225 C TYR 225 1_555 O K K . C K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc30 C OD2 ASP 267 C ASP 267 1_555 M ZN ZN . C ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc31 M ZN ZN . C ZN 406 1_555 R O HOH . C HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? # _chem_comp.formula 'C16 H16 N2 O3' _chem_comp.formula_weight 284.31 _chem_comp.id AGE _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-N-hydroxy-3-[1-methyl-4-(phenylacetyl)-1H-pyrrol-2-yl]prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'APHA Compound 8;3-(1-Methyl-4-phenylacetyl-1H-2-pyrrolyl)-N-hydroxypropenamide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C12 AGE sing 1 n y C2 C1 AGE doub 2 n y C2 C3 AGE sing 3 n y C2 H2 AGE sing 4 n n N2 O1 AGE sing 5 n n C4 C5 AGE sing 6 n y C4 H4 AGE sing 7 n n C5 C7 AGE sing 8 n n C6 C5 AGE doub 9 n y C6 H6 AGE sing 10 n n O2 C16 AGE doub 11 n n C1 C6 AGE sing 12 n y C1 H1 AGE sing 13 n n C3 C4 AGE doub 14 n y C3 H3 AGE sing 15 n n C7 C8 AGE sing 16 n n C7 H7 AGE sing 17 n n C7 H7A AGE sing 18 n n C8 O3 AGE doub 19 n n C9 C8 AGE sing 20 n n C9 C13 AGE sing 21 n y C10 N1 AGE sing 22 n y C10 C9 AGE doub 23 n y C10 H10 AGE sing 24 n n C11 N1 AGE sing 25 n n C11 H11 AGE sing 26 n n C11 H11A AGE sing 27 n n C11 H11B AGE sing 28 n n C12 C14 AGE sing 29 n n C12 C13 AGE doub 30 n y C13 H13 AGE sing 31 n n C14 C15 AGE doub 32 n n C14 H14 AGE sing 33 n n C15 C16 AGE sing 34 e n C15 H15 AGE sing 35 n n C16 N2 AGE sing 36 n n N2 H151 AGE sing 37 n n O1 H16 AGE sing 38 n n # _atom_sites.entry_id 3F07 _atom_sites.fract_transf_matrix[1][1] 0.011315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000939 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 400 400 ZN ZN . E 3 K A 1 401 401 K K . F 3 K A 1 402 402 K K . G 2 ZN A 1 409 409 ZN ZN . H 4 AGE A 1 500 500 AGE AGE . I 2 ZN B 1 403 403 ZN ZN . J 3 K B 1 404 404 K K . K 3 K B 1 405 405 K K . L 4 AGE B 1 501 501 AGE AGE . M 2 ZN C 1 406 406 ZN ZN . N 3 K C 1 407 407 K K . O 3 K C 1 408 408 K K . P 5 HOH A 1 800 800 HOH HOH . P 5 HOH A 2 801 801 HOH HOH . P 5 HOH A 3 802 802 HOH HOH . P 5 HOH A 4 803 803 HOH HOH . P 5 HOH A 5 812 812 HOH HOH . Q 5 HOH B 1 804 804 HOH HOH . Q 5 HOH B 2 805 805 HOH HOH . Q 5 HOH B 3 807 807 HOH HOH . R 5 HOH C 1 808 808 HOH HOH . R 5 HOH C 2 809 809 HOH HOH . R 5 HOH C 3 810 810 HOH HOH . R 5 HOH C 4 811 811 HOH HOH . R 5 HOH C 5 813 813 HOH HOH . R 5 HOH C 6 814 814 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AGE . . . L 4 -0.106 12.815 33.24 0.7 72.27 ? N1 AGE 501 B 1 HETATM 2 C C2 AGE . . . L 4 -5.499 12.833 29.218 0.7 76.69 ? C2 AGE 501 B 1 HETATM 3 N N2 AGE . . . L 4 0.729 6.714 34.381 0.7 67.67 ? N2 AGE 501 B 1 HETATM 4 C C4 AGE . . . L 4 -3.5 13.74 27.961 0.7 76.56 ? C4 AGE 501 B 1 HETATM 5 C C5 AGE . . . L 4 -2.597 13.434 29.079 0.7 76.14 ? C5 AGE 501 B 1 HETATM 6 C C6 AGE . . . L 4 -3.216 12.809 30.277 0.7 75.82 ? C6 AGE 501 B 1 HETATM 7 O O1 AGE . . . L 4 0.722 5.777 35.309 0.7 68.33 ? O1 AGE 501 B 1 HETATM 8 O O2 AGE . . . L 4 0.237 8.309 35.86 0.7 68.13 ? O2 AGE 501 B 1 HETATM 9 O O3 AGE . . . L 4 1.274 14.032 29.331 0.7 74.01 ? O3 AGE 501 B 1 HETATM 10 C C1 AGE . . . L 4 -4.639 12.515 30.347 0.7 75.76 ? C1 AGE 501 B 1 HETATM 11 C C3 AGE . . . L 4 -4.928 13.448 28.018 0.7 76.55 ? C3 AGE 501 B 1 HETATM 12 C C7 AGE . . . L 4 -1.107 13.813 28.833 0.7 75.1 ? C7 AGE 501 B 1 HETATM 13 C C8 AGE . . . L 4 0.178 13.653 29.722 0.7 74.31 ? C8 AGE 501 B 1 HETATM 14 C C9 AGE . . . L 4 0.132 13.017 31.094 0.7 73.63 ? C9 AGE 501 B 1 HETATM 15 C C10 AGE . . . L 4 -0.139 13.727 32.249 0.7 73.04 ? C10 AGE 501 B 1 HETATM 16 C C11 AGE . . . L 4 -0.356 13.218 34.633 0.7 72.32 ? C11 AGE 501 B 1 HETATM 17 C C12 AGE . . . L 4 0.173 11.499 32.835 0.7 72.06 ? C12 AGE 501 B 1 HETATM 18 C C13 AGE . . . L 4 0.329 11.627 31.445 0.7 72.68 ? C13 AGE 501 B 1 HETATM 19 C C14 AGE . . . L 4 0.254 10.312 33.747 0.7 71.4 ? C14 AGE 501 B 1 HETATM 20 C C15 AGE . . . L 4 0.509 8.972 33.528 0.7 69.53 ? C15 AGE 501 B 1 HETATM 21 C C16 AGE . . . L 4 0.478 8.002 34.698 0.7 68.24 ? C16 AGE 501 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 522 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #